Arthrobacter deserti sp. nov., isolated from a desert soil sample.

Abstract:

:A Gram-stain-positive, non-motile, rod-shaped, catalase-positive and oxidase-negative bacterium, designated YIM CS25T, was isolated from a soil sample collected from Turpan desert in Xinjiang Uyghur Autonomous Region, north-western China. The isolate grew at 15-40 °C, at pH 6.0-8.0 and with 0-6 % (w/v) NaCl. The phylogenetic trees based on 16S rRNA gene sequences revealed that strain YIM CS25T belonged to the genus Arthrobacter and was closely related to Arthrobacter halodurans JSM 078085T (95.89 % similarity). The peptidoglycan type contained lysine, alanine and glutamic acid. The major whole-cell sugars were galactose, glucose and ribose. The isolate contained diphosphatidylglycerol, phosphatidylglycerol and phosphatidylinositol as the major polar lipids and MK-9 (H2) as the predominant menaquinone. The major cellular fatty acids were anteiso-C15 : 0, iso-C15 : 0, anteiso-C17 : 0, iso-C16 : 0 and anteiso-C17 : 1ω9c. The genomic DNA G+C content was 68.3 mol%. On the basis of phylogenetic, phenotypic and chemotaxonomic analysis, strain YIM CS25T is considered to represent a novel species of the genus Arthrobacter, for which the name Arthrobacter deserti sp. nov. is proposed. The type strain is YIM CS25T ( = KCTC 39544T = CGMCC 1.15091T).

authors

Hu QW,Chu X,Xiao M,Li CT,Yan ZF,Hozzein WN,Kim CJ,Zhi XY,Li WJ

doi

10.1099/ijsem.0.000986

subject

Has Abstract

pub_date

2016-05-01 00:00:00

pages

2035-2040

issue

5

eissn

1466-5026

issn

1466-5034

journal_volume

66

pub_type

杂志文章
  • Lactobacillus versmoldensis sp. nov., isolated from raw fermented sausage.

    abstract::Lactobacillus versmoldensis sp. nov. (KU-3T) was isolated from raw fermented sausages. The new species was present in high numbers, and frequently dominated the lactic acid bacteria (LAB) populations of the products. 16S rDNA sequence data revealed that the isolates are closely related to the species Lactobacillus kim...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.02387-0

    authors: Kröckel L,Schillinger U,Franz CMAP,Bantleon A,Ludwig W

    更新日期:2003-03-01 00:00:00

  • Pseudomonas salomonii sp. nov., pathogenic on garlic, and Pseudomonas palleroniana sp. nov., isolated from rice.

    abstract::A total of 26 strains, including 15 strains isolated from garlic plants with the typical symptoms of 'Café au lait' disease and 11 strains isolated from diseased or healthy rice seeds and sheaths infested by Pseudomonas fuscovaginae, were compared with 70 type or reference strains of oxidase-positive pathogenic or non...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/00207713-52-6-2065

    authors: Gardan L,Bella P,Meyer JM,Christen R,Rott P,Achouak W,Samson R

    更新日期:2002-11-01 00:00:00

  • Paenalcaligenes hominis gen. nov., sp. nov., a new member of the family Alcaligenaceae.

    abstract::A beige-pigmented bacterium (strain CCUG 53761A(T)) was isolated from human blood from an 85-year-old man in Göteborg, Sweden. Comparative analysis of 16S rRNA gene sequences showed that this bacterium displayed <95 % similarity to all described species of the genera of the family Alcaligenaceae. It grouped within the...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.016576-0

    authors: Kämpfer P,Falsen E,Langer S,Lodders N,Busse HJ

    更新日期:2010-07-01 00:00:00

  • Thermoanaerobacter sulfurigignens sp. nov., an anaerobic thermophilic bacterium that reduces 1 M thiosulfate to elemental sulfur and tolerates 90 mM sulfite.

    abstract::Two anaerobic thermophilic bacteria, designated strains JW/SL824 and JW/SL-NZ826(T), were isolated from an acidic volcanic steam outlet on White Island, New Zealand. Cells were rod-shaped, spore-forming, motile and Gram-stain negative, but contained Gram-type positive cell wall. Strain JW/SL-NZ826(T) utilized various ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.64748-0

    authors: Lee YJ,Dashti M,Prange A,Rainey FA,Rohde M,Whitman WB,Wiegel J

    更新日期:2007-07-01 00:00:00

  • Arthrobacter nasiphocae sp. nov., from the common seal (Phoca vitulina).

    abstract::An unknown gram-positive, catalase-positive, strictly aerobic, rod-shaped bacterium was isolated from the nasal cavities of two common seals. Chemical analysis revealed the presence in the bacterium of a hitherto unknown cell-wall murein [type: L-Lys-L-Ala2-Gly(2-3)-L-Ala (Gly)]. Comparative 16S rRNA gene sequencing s...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/00207713-52-2-569

    authors: Collins MD,Hoyles L,Foster G,Falsen E,Weiss N

    更新日期:2002-03-01 00:00:00

  • Flavobacterium cerinum sp. nov., isolated from Arctic tundra soil.

    abstract::In the present paper, we describe a new species of the genus Flavobacterium, designated as strain 1E403T, which was isolated from a soil sample collected from the Arctic. Strain 1E403T was Gram-stain-negative, yellow-pigmented, rod-shaped, gliding and aerobic. Growth occurred at 4-37 °C (optimum, 28 °C), pH 6.0-9.0 (p...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003648

    authors: Zhang R,Zhang XY,Sun XK,Mu DS,Du ZJ

    更新日期:2019-12-01 00:00:00

  • Rhodothermus profundi sp. nov., a thermophilic bacterium isolated from a deep-sea hydrothermal vent in the Pacific Ocean.

    abstract::Nine thermophilic strains of aerobic, non-sporulating, heterotrophic bacteria were isolated after enrichment of chimney material sampled from a deep-sea hydrothermal field at a depth of 2634m on the East-Pacific Rise (1 °N). The bacteria stained Gram-negative. They were rod-shaped and measured approximately 0.5μm in w...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.012724-0

    authors: Marteinsson VT,Bjornsdottir SH,Bienvenu N,Kristjansson JK,Birrien JL

    更新日期:2010-12-01 00:00:00

  • Rhizomicrobium electricum sp. nov., a facultatively anaerobic, fermentative, prosthecate bacterium isolated from a cellulose-fed microbial fuel cell.

    abstract::A facultatively anaerobic, prosthecate bacterium, strain Mfc52(T), was isolated from a microbial fuel cell inoculated with soil and fed with cellulose as the sole fuel. Cells were Gram-negative, non-spore-forming, straight or slightly curved rods, and some of them had one or two polar prosthecae (stalks). Cells reprod...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.023580-0

    authors: Kodama Y,Watanabe K

    更新日期:2011-08-01 00:00:00

  • Polaribacter haliotis sp. nov., isolated from the gut of abalone Haliotis discus hannai.

    abstract::A Gram-stain-negative, aerobic, non-motile and coccoid, ovoid or rod-shaped bacterial strain, designated RA4-7T, was isolated from the gut of an abalone (Haliotis discus hannai) collected from the sea around Jeju island, South Korea, and subjected to a polyphasic taxonomic study. RA4-7T grew optimally at 25 °C, at pH ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001557

    authors: Kim YO,Park IS,Park S,Nam BH,Park JM,Kim DG,Yoon JH

    更新日期:2016-12-01 00:00:00

  • Paracoccus caeni sp. nov., isolated from sludge.

    abstract::A Gram-negative, non-motile bacterium, designated MJ17(T), was isolated from sludge at the Daejeon sewage disposal plant in South Korea. Comparative 16S rRNA gene sequence analysis showed that strain MJ17(T) belonged to the genus Paracoccus in the family Rhodobacteraceae of the class Alphaproteobacteria. 16S rRNA gene...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.017897-0

    authors: Lee M,Woo SG,Park G,Kim MK

    更新日期:2011-08-01 00:00:00

  • Streptococcus catagoni sp. nov., isolated from the respiratory tract of diseased Chacoan peccaries (Catagonus wagneri).

    abstract::Novel catalase-negative, Gram-stain-positive, beta-haemolytic, coccus-shaped organisms were isolated from Chacoan peccaries that died from respiratory disease. The initial API 20 Strep profiles suggested Streptococcus agalactiae with acceptable identification scores, but the 16S rRNA gene similarity (1548 bp) to avail...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.004471

    authors: Mühldorfer K,Szentiks CA,Wibbelt G,van der Linden M,Ewers C,Semmler T,Akimkin V,Blom J,Rau J,Eisenberg T

    更新日期:2020-11-01 00:00:00

  • Thalassobius litorarius sp. nov., isolated from a tidal flat.

    abstract::A Gram-stain-negative, aerobic, non-motile and rod-shaped bacterium, belonging to the family Rhodobacteraceae, designated strain MME-075T, was isolated from a tidal flat. Strain MME-075T grew with 1-5% (w/v) NaCl at 20-35 °C and at pH 7-9. Optimal growth occurred with 2% (w/v) NaCl at 25-30 °C and at pH 7. The dominan...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.000931

    authors: Park I,Cha IT,Seo MJ

    更新日期:2016-04-01 00:00:00

  • Ulvibacter antarcticus sp. nov., isolated from Antarctic coastal seawater.

    abstract::A seawater bacterium, designated IMCC3101(T), was isolated from Antarctic coastal seawater. The strain was Gram-negative, chemoheterotrophic, obligately aerobic, pigmented dark yellow (flexirubin-type pigments) and devoid of gliding and flagellar motility. On the basis of 16S rRNA gene sequence comparisons, the most c...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.65265-0

    authors: Choi TH,Lee HK,Lee K,Cho JC

    更新日期:2007-12-01 00:00:00

  • Myroides xuanwuensis sp. nov., a mineral-weathering bacterium isolated from forest soil.

    abstract::A Gram-reaction-negative, aerobic, non-motile, yellow-pigmented, rod-shaped bacterium, designated strain TH-19(T), was isolated from a forest soil sample in Jiangsu province, China. On the basis of 16S rRNA gene sequence similarity, strain TH-19(T) was shown to belong to the genus Myroides, a member of the phylum Bact...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.056739-0

    authors: Zhang ZD,He LY,Huang Z,Sheng XF

    更新日期:2014-02-01 00:00:00

  • Flavobacterium tibetense sp. nov., isolated from a wetland.

    abstract::A novel, Gram-stain-negative, non-motile and rod-shaped bacterium, designated YH5T, was isolated from the YonghuCo wetland on the Tibetan Plateau. The strain was able to grow optimally with 1 % (w/v) NaCl and tolerated up to 3 % NaCl. Growth occurred at pH 6-9 (optimum pH 7) and 10-37 °C (optimum 30 °C). Vitamins were...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003124

    authors: Phurbu D,Lu H,Xue X,Tian Y,Pema Y,Ma C,Xing P

    更新日期:2019-01-01 00:00:00

  • Amycolatopsis australiensis sp. nov., an actinomycete isolated from arid soils.

    abstract::The taxonomic position of a group of mesophilic actinomycetes isolated from arid Australian soils was determined using a polyphasic approach. The organisms shared chemical and morphological markers typical of members of the genus Amycolatopsis. They had identical 16S rRNA gene sequences and formed a distinct phyletic ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.64260-0

    authors: Tan GYA,Robinson S,Lacey E,Goodfellow M

    更新日期:2006-10-01 00:00:00

  • Arcanobacterium phocisimile sp. nov., isolated from harbour seals.

    abstract::A polyphasic taxonomic study was performed on two previously unidentified Arcanobacterium-like Gram-positive strains isolated from harbour seals. Comparative 16S rRNA gene sequencing showed that both bacteria belonged to the genus Arcanobacterium and were most closely related to Arcanobacterium haemolyticum CIP 103370...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.045591-0

    authors: Hijazin M,Sammra O,Ülbegi-Mohyla H,Nagib S,Alber J,Lämmler C,Kämpfer P,Glaeser SP,Busse HJ,Kassmannhuber J,Prenger-Berninghoff E,Weiss R,Siebert U,Hassan AA,Abdulmawjood A,Zschöck M

    更新日期:2013-06-01 00:00:00

  • Micromonospora cremea sp. nov. and Micromonospora zamorensis sp. nov., isolated from the rhizosphere of Pisum sativum.

    abstract::Three actinobacterial strains, CR30(T), CR36 and CR38(T), were isolated from rhizosphere soil of Pisum sativum plants collected in Spain. The strains were filamentous, Gram-stain-positive and produced single spores. Phylogenetic, chemotaxonomic and morphological analyses confirmed that the three strains belonged to th...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.038695-0

    authors: Carro L,Pukall R,Spröer C,Kroppenstedt RM,Trujillo ME

    更新日期:2012-12-01 00:00:00

  • Reclassification of Staphylococcus pulvereri Zakrzewska-Czerwinska et al. 1995 as a later synonym of Staphylococcus vitulinus Webster et al. 1994.

    abstract::A polyphasic taxonomic approach was applied to strains of the species Staphylococcus vitulinus and Staphylococcus pulvereri in order to clarify their taxonomic relatedness. Four reference strains, representing both species, and seven strains isolated from human clinical material were characterized by biotyping, riboty...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.63080-0

    authors: Švec P,Vancanneyt M,Sedláček I,Engelbeen K,Štětina V,Swings J,Petráš P

    更新日期:2004-11-01 00:00:00

  • Methylomarinovum caldicuralii gen. nov., sp. nov., a moderately thermophilic methanotroph isolated from a shallow submarine hydrothermal system, and proposal of the family Methylothermaceae fam. nov.

    abstract::A novel methane-oxidizing bacterium, strain IT-9(T), was isolated from a shallow submarine hydrothermal system occurring in a coral reef in Japan. Strain IT-9(T) was a Gram-negative, aerobic, motile, coccoid or oval-shaped bacterium with the distinctive intracytoplasmic membrane arrangement of a type I methanotroph. S...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.058172-0

    authors: Hirayama H,Abe M,Miyazaki M,Nunoura T,Furushima Y,Yamamoto H,Takai K

    更新日期:2014-03-01 00:00:00

  • Haloactinomyces albus gen. nov., sp. nov., isolated from the Dead Sea.

    abstract::A novel halophilic, filamentous actinomycete strain, designated AFM 10258T, was isolated from a sediment sample collected from the Dead Sea of Israel. The isolate grew with 10-35 % NaCl and did not grow without NaCl. The isolate formed white aerial mycelium and long spore chains, and two spores were separated by steri...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001783

    authors: Lai H,Jiang Y,Chen X,Li Q,Jiang C,Jiang Y,Wei X

    更新日期:2017-05-01 00:00:00

  • Lacibacter cauensis gen. nov., sp. nov., a novel member of the phylum Bacteroidetes isolated from sediment of a eutrophic lake.

    abstract::A novel strain, NJ-8(T), was isolated from sediment of the eutrophic Taihu Lake (China) and was subjected to a taxonomic study by using a polyphasic approach. The novel strain was aerobic and formed orange-pigmented colonies on R2A agar. Cells were Gram-negative single rods that were motile by means of gliding. Phylog...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.003475-0

    authors: Qu JH,Yuan HL,Yang JS,Li HF,Chen N

    更新日期:2009-05-01 00:00:00

  • Simiduia agarivorans gen. nov., sp. nov., a marine, agarolytic bacterium isolated from shallow coastal water from Keelung, Taiwan.

    abstract::A Gram-negative, heterotrophic, agarolytic, marine bacterium, designated strain SA1T, was isolated from a seawater sample collected in the shallow coastal region of Keelung, Taiwan. Cells were straight to slightly curved rods. Nearly all of the cells were non-motile and non-flagellated during the exponential phase of ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.65371-0

    authors: Shieh WY,Liu TY,Lin SY,Jean WD,Chen JS

    更新日期:2008-04-01 00:00:00

  • Polaribacter lacunae sp. nov., isolated from a lagoon.

    abstract::An aerobic, Gram-stain-negative, rod-shaped bacterium, designated strain HMF2268T, was isolated from a lagoon in the Republic of Korea. Comparative 16S rRNA gene sequence analysis showed that strain HMF2268T belonged to the genus Polaribacter and was most closely related to Polaribacter huanghezhanensisSM1202T (96.8 %...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001694

    authors: Kang H,Kim H,Joung Y,Joh K

    更新日期:2017-03-01 00:00:00

  • Halalkalicoccus jeotgali sp. nov., a halophilic archaeon from shrimp jeotgal, a traditional Korean fermented seafood.

    abstract::A novel, extremely halophilic archaeon B3(T) was isolated from shrimp-salted seafood. Its morphology, physiology, biochemical features and 16S rRNA gene sequence were characterized. Strain B3(T) is non-motile, Gram-variable, requires at least 10 % (w/v) NaCl for growth and grows in the ranges of 21-50 degrees C and pH...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.65121-0

    authors: Roh SW,Nam YD,Chang HW,Sung Y,Kim KH,Oh HM,Bae JW

    更新日期:2007-10-01 00:00:00

  • Tangfeifania diversioriginum gen. nov., sp. nov., a representative of the family Draconibacteriaceae.

    abstract::A novel Gram-stain-negative, facultatively anaerobic, catalase- and oxidase-positive, non-motile and pink-pigmented bacterium, designated G22(T), was isolated from Gahai, a saltwater lake in Qinghai province, China. Optimal growth occurred at 33-35 °C, pH 7.0-7.5, and in the presence of 2-4% (w/v) NaCl. The DNA G+C co...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.066902-0

    authors: Liu QQ,Li XL,Rooney AP,Du ZJ,Chen GJ

    更新日期:2014-10-01 00:00:00

  • Phylogenetic analysis of Saccharothrix and related taxa: proposal for Actinosynnemataceae fam. nov.

    abstract::Partial sequences for 16S rDNA were determined for strains of the genus Saccharothrix, including most described species, as well as strains of the described species of the related genera Kutzneria, Actinokineospora and Actinosynnema. These were aligned with published sequences for other species of these genera, as wel...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/00207713-50-1-331

    authors: Labeda DP,Kroppenstedt RM

    更新日期:2000-01-01 00:00:00

  • Phylogenetic analysis of the genus Pediococcus, including Pediococcus claussenii sp. nov., a novel lactic acid bacterium isolated from beer.

    abstract::Pediococci are found in foods and on plants and as beer-spoilage agents. The goal of the present study was to use the DNA sequences of the first three variable regions of the 165 rRNA gene, the 16S-23S rRNA internally transcribed spacer region sequence and approximately a third of the 60 kDa heat-shock protein gene to...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/00207713-52-6-2003

    authors: Dobson CM,Deneer H,Lee S,Hemmingsen S,Glaze S,Ziola B

    更新日期:2002-11-01 00:00:00

  • Balneicella halophila gen. nov., sp. nov., an anaerobic bacterium, isolated from a thermal spring and description of Balneicellaceae fam. nov.

    abstract::A mesophilic anaerobic bacterium, designated KHALHBd91T was isolated from the moderately hot spring of Hammam Biadha, Tunisia. The strain was Gram-staining-negative, non-sporulating, non-motile and rod-shaped, appearing singly (0.5-2.0×0.5-1 µm). It grew anaerobically at temperatures between 20 and 50 °C (optimum 37 °...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001412

    authors: Fadhlaoui K,Ben Hania W,Postec A,Hamdi M,Ollivier B,Fardeau ML

    更新日期:2016-11-01 00:00:00

  • Marinicauda salina sp. nov., isolated from a marine solar saltern.

    abstract::A novel Gram-stain-negative, aerobic, oxidase-positive, motile, dimorphic rod bacterium, with a polar flagellum or a polar prostheca, designated as strain WD6-1T, was isolated from a sediment sample collected from a marine solar saltern located in Weihai, PR China. Growth of strain WD6-1T was observed at 15-45 °C (opt...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003441

    authors: Zhai TJ,Liu BT,Zhu RQ,Chen GJ,Du ZJ

    更新日期:2019-08-01 00:00:00