Proposed Mode of Binding and Action of Positive Allosteric Modulators at Opioid Receptors.

Abstract:

:Available crystal structures of opioid receptors provide a high-resolution picture of ligand binding at the primary ("orthosteric") site, that is, the site targeted by endogenous ligands. Recently, positive allosteric modulators of opioid receptors have also been discovered, but their modes of binding and action remain unknown. Here, we use a metadynamics-based strategy to efficiently sample the binding process of a recently discovered positive allosteric modulator of the δ-opioid receptor, BMS-986187, in the presence of the orthosteric agonist SNC-80, and with the receptor embedded in an explicit lipid-water environment. The dynamics of BMS-986187 were enhanced by biasing the potential acting on the ligand-receptor distance and ligand-receptor interaction contacts. Representative lowest-energy structures from the reconstructed free-energy landscape revealed two alternative ligand binding poses at an allosteric site delineated by transmembrane (TM) helices TM1, TM2, and TM7, with some participation of TM6. Mutations of amino acid residues at these proposed allosteric sites were found to either affect the binding of BMS-986187 or its ability to modulate the affinity and/or efficacy of SNC-80. Taken together, these combined experimental and computational studies provide the first atomic-level insight into the modulation of opioid receptor binding and signaling by allosteric modulators.

journal_name

ACS Chem Biol

journal_title

ACS chemical biology

authors

Shang Y,Yeatman HR,Provasi D,Alt A,Christopoulos A,Canals M,Filizola M

doi

10.1021/acschembio.5b00712

subject

Has Abstract

pub_date

2016-05-20 00:00:00

pages

1220-9

issue

5

eissn

1554-8929

issn

1554-8937

journal_volume

11

pub_type

杂志文章
  • Evaluation of analogues of GalNAc as substrates for enzymes of the mammalian GalNAc salvage pathway.

    abstract::Changes in glycosylation are correlated to disease and associated with differentiation processes. Experimental tools are needed to investigate the physiological implications of these changes either by labeling of the modified glycans or by blocking their biosynthesis. N-Acetylgalactosamine (GalNAc) is a monosaccharide...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb200511t

    authors: Pouilly S,Bourgeaux V,Piller F,Piller V

    更新日期:2012-04-20 00:00:00

  • High Throughput Screen Identifies Small Molecule Effectors That Modulate Thin Filament Activation in Cardiac Muscle.

    abstract::Current therapeutic interventions for both heart disease and heart failure are largely insufficient and associated with undesired side effects. Biomedical research has emphasized the role of sarcomeric protein function for the normal performance and energy efficiency of the heart, suggesting that directly targeting th...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.0c00908

    authors: Parijat P,Kondacs L,Alexandrovich A,Gautel M,Cobb AJA,Kampourakis T

    更新日期:2021-01-15 00:00:00

  • NMR structure of the S-linked glycopeptide sublancin 168.

    abstract::Sublancin 168 is a member of a small group of glycosylated antimicrobial peptides known as glycocins. The solution structure of sublancin 168, a 37-amino-acid peptide produced by Bacillus subtilis 168, has been solved by nuclear magnetic resonance (NMR) spectroscopy. Sublancin comprises two α-helices and a well-define...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb4008106

    authors: Garcia De Gonzalo CV,Zhu L,Oman TJ,van der Donk WA

    更新日期:2014-03-21 00:00:00

  • Iron Uptake Oxidoreductase (IruO) Uses a Flavin Adenine Dinucleotide Semiquinone Intermediate for Iron-Siderophore Reduction.

    abstract::Many pathogenic bacteria including Staphylococcus aureus use iron-chelating siderophores to acquire iron. Iron uptake oxidoreductase (IruO), a flavin adenine dinucleotide (FAD)-containing nicotinamide adenine dinucleotide phosphate (NADPH)-dependent reductase from S. aureus, functions as a reductase for IsdG and IsdI,...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.7b00203

    authors: Kobylarz MJ,Heieis GA,Loutet SA,Murphy MEP

    更新日期:2017-07-21 00:00:00

  • Unraveling the Mechanism of a LOV Domain Optogenetic Sensor: A Glutamine Lever Induces Unfolding of the Jα Helix.

    abstract::Light-activated protein domains provide a convenient, modular, and genetically encodable sensor for optogenetics and optobiology. Although these domains have now been deployed in numerous systems, the precise mechanism of photoactivation and the accompanying structural dynamics that modulate output domain activity rem...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.0c00543

    authors: Iuliano JN,Collado JT,Gil AA,Ravindran PT,Lukacs A,Shin S,Woroniecka HA,Adamczyk K,Aramini JM,Edupuganti UR,Hall CR,Greetham GM,Sazanovich IV,Clark IP,Daryaee T,Toettcher JE,French JB,Gardner KH,Simmerling CL,Meech

    更新日期:2020-10-16 00:00:00

  • Transformation of human cathelicidin LL-37 into selective, stable, and potent antimicrobial compounds.

    abstract::This Letter reports a family of novel antimicrobial compounds obtained by combining peptide library screening with structure-based design. Library screening led to the identification of a human LL-37 peptide resistant to chymotrypsin. This d-amino-acid-containing peptide template was active against Escherichia coli bu...

    journal_title:ACS chemical biology

    pub_type: 信件

    doi:10.1021/cb500475y

    authors: Wang G,Hanke ML,Mishra B,Lushnikova T,Heim CE,Chittezham Thomas V,Bayles KW,Kielian T

    更新日期:2014-09-19 00:00:00

  • Discovery of small-molecule enhancers of reactive oxygen species that are nontoxic or cause genotype-selective cell death.

    abstract::Elevation of reactive oxygen species (ROS) levels has been observed in many cancer cells relative to nontransformed cells, and recent reports have suggested that small-molecule enhancers of ROS may selectively kill cancer cells in various in vitro and in vivo models. We used a high-throughput screening approach to ide...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb300653v

    authors: Adams DJ,Boskovic ZV,Theriault JR,Wang AJ,Stern AM,Wagner BK,Shamji AF,Schreiber SL

    更新日期:2013-05-17 00:00:00

  • Heparinoids activate a protease, secreted by mucosa and tumors, via tethering supplemented by allostery.

    abstract::Activation by glycosaminoglycans (GAGs) is an emerging trend among extracellular proteases important in disease. ProMMP-7, the zymogen of a matrix metalloproteinase secreted by mucosal epithelial and tumor cells, is activated at their surfaces by sulfated GAGs, but how? ProMMP-7 is activated in trans by representative...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb400898t

    authors: Fulcher YG,Sanganna Gari RR,Frey NC,Zhang F,Linhardt RJ,King GM,Van Doren SR

    更新日期:2014-04-18 00:00:00

  • The Importance of Charge in Perturbing the Aromatic Glue Stabilizing the Protein-Protein Interface of Homodimeric tRNA-Guanine Transglycosylase.

    abstract::Bacterial tRNA-guanine transglycosylase (Tgt) is involved in the biosynthesis of the modified tRNA nucleoside queuosine present in the anticodon wobble position of tRNAs specific for aspartate, asparagine, histidine, and tyrosine. Inactivation of the tgt gene leads to decreased pathogenicity of Shigella bacteria. Ther...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.0c00700

    authors: Nguyen A,Nguyen D,Phong Nguyen TX,Sebastiani M,Dörr S,Hernandez-Alba O,Debaene F,Cianférani S,Heine A,Klebe G,Reuter K

    更新日期:2020-11-20 00:00:00

  • Role of stoichiometry in the dimer-stabilizing effect of AMPA receptor allosteric modulators.

    abstract::Protein dimerization provides a mechanism for the modulation of cellular signaling events. In α-amino-3-hydroxy-5-methyl-4-isoxazole-propionic acid (AMPA) receptors, the rapidly desensitizing, activated state has been correlated with a weakly dimeric, glutamate-binding domain conformation. Allosteric modulators can fo...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb4007166

    authors: Ptak CP,Hsieh CL,Weiland GA,Oswald RE

    更新日期:2014-01-17 00:00:00

  • In vitro and in vivo characterization of a tunable dual-reactivity probe of the Nrf2-ARE pathway.

    abstract::The cell utilizes the Keap1/Nrf2-ARE signaling pathway to detoxify harmful chemicals in order to protect itself from oxidative stress and to maintain its reducing environment. When exposed to oxidative stress and xenobiotic inducers, the redox sensitive Keap1 is covalently modified at specific cysteine residues. Conse...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb4000103

    authors: Wang R,Mason DE,Choe KP,Lewin AS,Peters EC,Luesch H

    更新日期:2013-08-16 00:00:00

  • Chemical modification of conotoxins to improve stability and activity.

    abstract::Conotoxins are small disulfide-rich peptides from the venom of cone snails. Along with other conopeptides, they target a wide range of membrane receptors, ion channels, and transporters, and because of their high potency and selectivity for defined subtypes of these receptors, they have attracted a great deal of atten...

    journal_title:ACS chemical biology

    pub_type: 杂志文章,评审

    doi:10.1021/cb700091j

    authors: Craik DJ,Adams DJ

    更新日期:2007-07-20 00:00:00

  • Cholesterol, it's not just for heart disease anymore.

    abstract::Recent studies have shown that cholesterol plays a significant role in the ability of Toxin A from Clostridium difficile to enter eukaryotic cells. The translocation process is one of three major steps during intoxication that could be targeted for intervention against the severe antibiotic-associated diarrhea caused ...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb600133b

    authors: Kerzmann A,Feig AL

    更新日期:2006-04-25 00:00:00

  • Surface labeling of enveloped viruses assisted by host cells.

    abstract::Labeling of virus opens new pathways for the understanding of viruses themselves and facilitates the utilization of viruses in modern biology, medicine, and materials. Based on the characteristic that viruses hijack their host cellular machineries to survive and reproduce themselves, a host-cell-assisted strategy is p...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb2001878

    authors: Huang BH,Lin Y,Zhang ZL,Zhuan F,Liu AA,Xie M,Tian ZQ,Zhang Z,Wang H,Pang DW

    更新日期:2012-04-20 00:00:00

  • Efficient NQO1 substrates are potent and selective anticancer agents.

    abstract::A major goal of personalized medicine in oncology is the identification of drugs with predictable efficacy based on a specific trait of the cancer cell, as has been demonstrated with gleevec (presence of Bcr-Abl protein), herceptin (Her2 overexpression), and iressa (presence of a specific EGFR mutation). This is a cha...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb4005832

    authors: Parkinson EI,Bair JS,Cismesia M,Hergenrother PJ

    更新日期:2013-10-18 00:00:00

  • Characterizing the altered cellular proteome induced by the stress-independent activation of heat shock factor 1.

    abstract::The heat shock response is an evolutionarily conserved, stress-responsive signaling pathway that adapts cellular proteostasis in response to pathologic insult. In metazoans, the heat shock response primarily functions through the posttranslational activation of heat shock factor 1 (HSF1), a stress-responsive transcrip...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb500062n

    authors: Ryno LM,Genereux JC,Naito T,Morimoto RI,Powers ET,Shoulders MD,Wiseman RL

    更新日期:2014-06-20 00:00:00

  • Repair of Alkylation Damage in Eukaryotic Chromatin Depends on Searching Ability of Alkyladenine DNA Glycosylase.

    abstract::Human alkyladenine DNA glycosylase (AAG) initiates the base excision repair pathway by excising alkylated and deaminated purine lesions. In vitro biochemical experiments demonstrate that AAG uses facilitated diffusion to efficiently search DNA to find rare sites of damage and suggest that electrostatic interactions ar...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.5b00409

    authors: Zhang Y,O'Brien PJ

    更新日期:2015-11-20 00:00:00

  • The N-Terminal Domain of NPHP1 Folds into a Monomeric Left-Handed Antiparallel Three-Stranded Coiled Coil with Anti-apoptotic Function.

    abstract::Mutations in the NPHP1 gene, coding for human nephrocystin-1 (NPHP1), cause the autosomal recessive disease nephronophthisis, the most common cause of end-stage renal disease in children and adolescents. The function and structure of NPHP1 are still poorly characterized. NPHP1 presents a modular structure well in keep...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.9b00582

    authors: Mannella V,Quilici G,Nigro EA,Lampis M,Minici C,Degano M,Boletta A,Musco G

    更新日期:2019-08-16 00:00:00

  • YTHDF2 Recognition of N1-Methyladenosine (m1A)-Modified RNA Is Associated with Transcript Destabilization.

    abstract::Epitranscriptomic modifications play an important role in RNA function and can impact gene expression. Here, we apply a chemical proteomics approach to investigate readers of N1-methyladenosine (m1A), a poorly characterized modification on mammalian mRNA. We find that YTHDF proteins, known m6A readers, recognize m1A-m...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.9b00655

    authors: Seo KW,Kleiner RE

    更新日期:2020-01-17 00:00:00

  • Novel inhibitors of human DOPA decarboxylase extracted from Euonymus glabra Roxb.

    abstract::Dopamine, a biogenic amine with important biological functions, is produced from l-DOPA by DOPA decarboxylase (DDC). DDC is a potential target to modulate the production of dopamine in several pathological states. Known inhibitors of DDC have been used for treatment of Parkinson's disease but suffered low specificity ...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb500009r

    authors: Ren J,Zhang Y,Jin H,Yu J,Zhou Y,Wu F,Zhang W

    更新日期:2014-04-18 00:00:00

  • Parietal Structures of Escherichia coli Can Impact the D-Cateslytin Antibacterial Activity.

    abstract::Bacterial resistance to conventional antibiotics is of major concern. Antimicrobial peptides (AMPs) are considered excellent alternatives. Among them, D-cateslytin (D-Ctl, derivative of a host defense peptide) has shown high efficiency against a broad spectrum of bacteria. The first target of AMPs is the outer membran...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.0c00622

    authors: Quilès F,Barth D,Peric O,Fantner GE,Francius G

    更新日期:2020-10-16 00:00:00

  • NanoLuc Complementation Reporter Optimized for Accurate Measurement of Protein Interactions in Cells.

    abstract::Protein-fragment complementation assays (PCAs) are widely used for investigating protein interactions. However, the fragments used are structurally compromised and have not been optimized nor thoroughly characterized for accurately assessing these interactions. We took advantage of the small size and bright luminescen...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.5b00753

    authors: Dixon AS,Schwinn MK,Hall MP,Zimmerman K,Otto P,Lubben TH,Butler BL,Binkowski BF,Machleidt T,Kirkland TA,Wood MG,Eggers CT,Encell LP,Wood KV

    更新日期:2016-02-19 00:00:00

  • Esterase-Triggered Self-Immolative Thiocarbamates Provide Insights into COS Cytotoxicity.

    abstract::Hydrogen sulfide (H2S) is an important gasotransmitter and biomolecule, and many synthetic small-molecule H2S donors have been developed for H2S-related research. One important class of triggerable H2S donors is self-immolative thiocarbamates, which function by releasing carbonyl sulfide (COS), which is rapidly conver...

    journal_title:ACS chemical biology

    pub_type: 信件

    doi:10.1021/acschembio.8b00981

    authors: Levinn CM,Steiger AK,Pluth MD

    更新日期:2019-02-15 00:00:00

  • CRISPRi and CRISPRa Screens in Mammalian Cells for Precision Biology and Medicine.

    abstract::Next-generation DNA sequencing technologies have led to a massive accumulation of genomic and transcriptomic data from patients and healthy individuals. The major challenge ahead is to understand the functional significance of the elements of the human genome and transcriptome, and implications for diagnosis and treat...

    journal_title:ACS chemical biology

    pub_type: 杂志文章,评审

    doi:10.1021/acschembio.7b00657

    authors: Kampmann M

    更新日期:2018-02-16 00:00:00

  • Covalent Inhibition of Ubc13 Affects Ubiquitin Signaling and Reveals Active Site Elements Important for Targeting.

    abstract::Ubc13 is an E2 ubiquitin conjugating enzyme that functions in nuclear DNA damage signaling and cytoplasmic NF-κB signaling. Here, we present the structures of complexes of Ubc13 with two inhibitors, NSC697923 and BAY 11-7082, which inhibit DNA damage and NF-κB signaling in human cells. NSC697923 and BAY 11-7082 both i...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.5b00222

    authors: Hodge CD,Edwards RA,Markin CJ,McDonald D,Pulvino M,Huen MS,Zhao J,Spyracopoulos L,Hendzel MJ,Glover JN

    更新日期:2015-07-17 00:00:00

  • Using self-assembled monolayers to understand α8β1-mediated cell adhesion to RGD and FEI motifs in nephronectin.

    abstract::Nephronectin is an extracellular matrix protein that interacts with the α8β1 integrin receptor and plays a role in tissue and organ development, though the motifs that mediate adhesion to the receptor remain unclear. This paper describes the use of self-assembled monolayers to study the adhesion of α8β1-presenting cel...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb200186j

    authors: Sánchez-Cortés J,Mrksich M

    更新日期:2011-10-21 00:00:00

  • Multiple Chemical Inducible Tal Effectors for Genome Editing and Transcription Activation.

    abstract::Inducible modulation is often required for precise investigations and manipulations of dynamic biological processes. Transcription activator-like effectors (TALEs) provide a powerful tool for targeted gene editing and transcriptional programming. We designed a series of chemical inducible systems by coupling TALEs wit...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.7b00606

    authors: Zhao C,Zhang Y,Zhao Y,Ying Y,Ai R,Zhang J,Wang Y

    更新日期:2018-03-16 00:00:00

  • The O-Carbamoyl-Transferase Alb15 Is Responsible for the Modification of Albicidin.

    abstract::Albicidin is a potent antibiotic and phytotoxin produced by Xanthomonas albilineans which targets the plant and bacterial DNA gyrase. We now report on a new albicidin derivative which is carbamoylated at the N-terminal coumaric acid by the action of the ATP-dependent O-carbamoyltransferase Alb15, present in the albici...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.5b01001

    authors: Petras D,Kerwat D,Pesic A,Hempel BF,von Eckardstein L,Semsary S,Arasté J,Marguerettaz M,Royer M,Cociancich S,Süssmuth RD

    更新日期:2016-05-20 00:00:00

  • Gel electrophoresis and X-ray fluorescence: A powerful combination for the analysis of protein metal binding.

    abstract::Understanding the complex biochemical mechanisms that underlie the regulation, toxicity, and protein binding of metal ions requires the ability to analyze the metal content of individual proteins in complex mixtures. In this issue of ACS Chemical Biology, a technique combining gel electrophoresis with synchrotron X-ra...

    journal_title:ACS chemical biology

    pub_type: 评论,杂志文章

    doi:10.1021/cb100145z

    authors: Zahler NH

    更新日期:2010-06-18 00:00:00

  • Aggregation-mediated macromolecular uptake by a molecular transporter.

    abstract::Endocytosis is a key process in cellular delivery of macromolecules by molecular transporters, although the mechanism of internalization remains unclear. Here, we probe the cellular uptake of streptavidin using biotinylated guanidinoneomycin (biotinGNeo), a low molecular weight guanidinium-rich molecular transporter. ...

    journal_title:ACS chemical biology

    pub_type: 信件

    doi:10.1021/cb400172h

    authors: Inoue M,Tong W,Esko JD,Tor Y

    更新日期:2013-07-19 00:00:00