Geographically driven adaptation of chilli veinal mottle virus revealed by genetic diversity analysis of the coat protein gene.

Abstract:

:Chilli veinal mottle virus (ChiVMV) is an important plant pathogen with a wide host range. The genetic structure of ChiVMV was investigated by analyzing the coat protein (CP) genes of 87 ChiVMV isolates from seven Asian regions. Pairwise F ST values between ChiVMV populations ranged from 0.108 to 0.681, indicating a significant spatial structure for this pathogen. In phylogeny-trait association analysis, the viral isolates from the same region tended to group together, showing a distinct geographic feature. These results suggest that geographic driven adaptation may be an important determinant of the genetic diversity of ChiVMV.

journal_name

Arch Virol

journal_title

Archives of virology

authors

Gao F,Jin J,Zou W,Liao F,Shen J

doi

10.1007/s00705-016-2761-7

subject

Has Abstract

pub_date

2016-05-01 00:00:00

pages

1329-33

issue

5

eissn

0304-8608

issn

1432-8798

pii

10.1007/s00705-016-2761-7

journal_volume

161

pub_type

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