Lon-dependent regulation of the DNA binding protein HU in Escherichia coli.

abstract：:The prediction of interresidue contacts and distances from coevolutionary data using deep learning has considerably advanced protein structure prediction. Here, we build on these advances by developing a deep residual network for predicting interresidue orientations, in addition to distances, and a Rosetta-constrained...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Yang J,Anishchenko I,Park H,Peng Z,Ovchinnikov S,Baker D

更新日期：2020-01-21 00:00:00

abstract：:Tephritid fruit flies belonging to the Rhagoletis pomonella sibling species complex are controversial because they have been proposed to diverge in sympatry (in the absence of geographic isolation) by shifting and adapting to new host plants. Here, we report evidence suggesting a surprising source of genetic variation...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Feder JL,Berlocher SH,Roethele JB,Dambroski H,Smith JJ,Perry WL,Gavrilovic V,Filchak KE,Rull J,Aluja M

更新日期：2003-09-02 00:00:00

abstract：:Acetyl-CoA carboxylase 1 (ACC1) catalyzes the formation of malonyl-CoA, the C2 donor for de novo synthesis of long-chain fatty acids. We have identified 64 exons, including 7 alternatively spliced minor exons (1A, 1B, 1C, 3, 5A', 5A, and 5B) in human ACC1 gene ( approximately 330 kb). The gene is regulated by three pr...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Mao J,Chirala SS,Wakil SJ

更新日期：2003-06-24 00:00:00

abstract：:Nitric oxide-releasing compounds were shown to activate an ADP-ribosyltransferase activity in the cytosol of Dictyostelium discoideum. The enzyme ADP-ribosylated a cytosolic protein of approximately 41 kDa, p41. Neither cGMP nor GTP and its analogues affected this ADP-ribosylation. p41 differs from other substrates AD...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Tao Y,Howlett A,Klein C

更新日期：1992-07-01 00:00:00

abstract：:The transcription factor retinoic acid receptor beta(2) (RARbeta(2)) is a potent inhibitor of breast cancer cells in vitro, and studies suggest that RARbeta expression is lost in primary breast cancer. Although RARbeta(2) is selectively down-regulated at the mRNA level in breast tumor cells, we show that expression of...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Sommer KM,Chen LI,Treuting PM,Smith LT,Swisshelm K

更新日期：1999-07-20 00:00:00

abstract：:Two human B-cell differentiation antigens, Bp35 and Bp50, apparently play distinct roles as signal receptors in B-cell activation. Monoclonal antibodies (mAbs) to either Bp35 or Bp50 deliver positive signals to B cells that stimulate their transition through the cell cycle. mAb to Bp35, like anti-immunoglobulin antibo...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Clark EA,Ledbetter JA

更新日期：1986-06-01 00:00:00

abstract：:p150Glued was first identified as a polypeptide that copurifies with cytoplasmic dynein, the minus-end-directed microtubule-based motor protein, and has more recently been shown to be present as a member of the oligomeric dynactin complex, which includes the actin-related protein centractin (Arp-1). Dynactin is though...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Waterman-Storer CM,Karki S,Holzbaur EL

更新日期：1995-02-28 00:00:00

abstract：:The cAMP receptor protein (CRP) of Escherichia coli needs cAMP for an allosteric change to regulate gene expression by binding to specific DNA sites. The hinge region connecting the DNA-binding domain to the cAMP-binding domain has been proposed to participate in the cAMP-induced allosteric change necessary to adjust ...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Ryu S,Kim J,Adhya S,Garges S

更新日期：1993-01-01 00:00:00

abstract：:In Escherichia coli, acetyl phosphate can be formed from acetyl-CoA via the phosphotransacetylase (phosphate acetyltransferase; acetyl-CoA:orthophosphate acetyltransferase, EC 2.3.1.8) reaction and from acetate (plus ATP) via the acetate kinase (ATP:acetate phosphotransferase, EC 2.7.2.1) reaction. By restricting acet...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Hong JS,Hunt AG,Masters PS,Lieberman MA

更新日期：1979-03-01 00:00:00

abstract：:The nucleolinus is an RNA-rich compartment, closely apposed to or embedded within the nucleolus. Discovered over 150 y ago, fewer than two dozen articles have been published on the nucleolinus, probably because complex histochemical stains are required for its visualization in the great majority of cells. The nucleoli...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Alliegro MA,Henry JJ,Alliegro MC

更新日期：2010-08-03 00:00:00

abstract：:Uropathogenic Escherichia coli invade bladder epithelial cells (BECs) by direct entry into specialized cAMP regulated exocytic compartments. Remarkably, a significant number of these intracellular bacteria are subsequently expelled in a nonlytic and piecemeal fashion by infected BECs. Here, we report that expulsion of...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Song J,Bishop BL,Li G,Grady R,Stapleton A,Abraham SN

更新日期：2009-09-01 00:00:00

abstract：:We have isolated two cDNA clones, NaPi-2 and NaPi-3, by screening rat kidney cortex and human kidney cortex cDNA libraries, respectively, for expression of sodium-dependent phosphate transport in Xenopus laevis oocytes. Substrate specificity and a detailed kinetic analysis (Na, Pi, H+ concentrations) suggested that ex...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Magagnin S,Werner A,Markovich D,Sorribas V,Stange G,Biber J,Murer H

更新日期：1993-07-01 00:00:00

abstract：:Small proteins can fold remarkably rapidly, even in μs. What limits their rate of folding? The Engrailed homeodomain is a particularly well-characterized example, which folds ultrafast via an intermediate, I, of solved structure. It is a puzzle that the helix2-turn-helix3 motif of the 3-helix bundle forms in approxima...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Neuweiler H,Banachewicz W,Fersht AR

更新日期：2010-12-21 00:00:00

abstract：:Oligodeoxyribonucleotides with site-specific modifications have been used as substrates for Escherichia coli DNA polymerase I holoenzyme and Klenow fragment. Modifications included the bulky guanine-8-aminofluorene adduct and a guanine oxidation product resembling the product of photosensitized DNA oxidation. By a com...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： O'Connor D,Stöhrer G

更新日期：1985-04-01 00:00:00

abstract：:Familial adenomatous polyposis (FAP) is an autosomal-dominant disease characterized by the development of hundreds of adenomatous polyps of the colorectum. Approximately 80% of FAP patients can be shown to have truncating mutations of the APC gene. To determine the cause of FAP in the other 20% of patients, MAMA (mono...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Laken SJ,Papadopoulos N,Petersen GM,Gruber SB,Hamilton SR,Giardiello FM,Brensinger JD,Vogelstein B,Kinzler KW

更新日期：1999-03-02 00:00:00

abstract：:The superior colliculus (SC) is part of a network of brain areas that directs saccadic eye movements, overtly shifting both gaze and attention from position to position, in space. Here, we seek direct evidence that the SC also contributes to the control of covert spatial attention, a process that focuses attention on ...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Müller JR,Philiastides MG,Newsome WT

更新日期：2005-01-18 00:00:00

abstract：:Shift work is a risk factor for hypertension, inflammation, and cardiovascular disease. This increased risk cannot be fully explained by classic risk factors. One of the key features of shift workers is that their behavioral and environmental cycles are typically misaligned relative to their endogenous circadian syste...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Morris CJ,Purvis TE,Hu K,Scheer FA

更新日期：2016-03-08 00:00:00

abstract：:Imaging reporter gene expression in living subjects is a rapidly evolving area of molecular imaging research. Studies have validated the use of reporter genes with positron emission tomography (PET), single photon emission computed tomography (SPECT), MRI, fluorescence with wild-type and mutants of green fluorescent p...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Bhaumik S,Gambhir SS

更新日期：2002-01-08 00:00:00

abstract：:Drosophila heteroneura and D. silvestris are sympatric species living on the island of Hawaii, while D. planitibia is allopatric on the nearby island of Maui. A pronounced ethological isolation is found between the sympatric species, and none between allopatric ones, except that D. planitibia females discriminate agai...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Ahearn JN,Carson HL,Dobzhansky T,Kaneshiro KY

更新日期：1974-03-01 00:00:00

abstract：:Senescent cell antigen (SCA), an aging antigen, is a protein that appears on old cells and marks them for removal by the immune system in mammals. It is derived from band 3, a ubiquitous membrane transport protein found in diverse cell types and tissues. We have used synthetic peptides to identify aging antigenic site...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Kay MM,Marchalonis JJ,Hughes J,Watanabe K,Schluter SF

更新日期：1990-08-01 00:00:00

abstract：:To understand the pathogenesis that may be induced by human adenovirus type 12 (Ad12), we have generated transgenic mice carrying the Ad12 early region 1 under control of the mouse mammary tumor virus long terminal repeat. Eleven of 11 male founder mice, but only 2 of 12 females, died between 3 to 4 mo of age. Death w...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Koike K,Hinrichs SH,Isselbacher KJ,Jay G

更新日期：1989-07-01 00:00:00

abstract：:A central question in protein-DNA recognition is the origin of the specificity that permits binding to the correct site in the presence of excess, nonspecific DNA. In the P22 Arc repressor, the Phe-10 side chain is part of the hydrophobic core of the free protein but rotates out to pack against the sugar-phosphate bac...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Schildbach JF,Karzai AW,Raumann BE,Sauer RT

更新日期：1999-02-02 00:00:00

abstract：:Ca deposition by isolated matrix vesicles from fetal calf growth plate cartilage and by a deoxycholate extract from matrix vesicles that included their phosphatase was studied under defined in vitro conditions. Electron microscopy showed that after removal of deoxycholate and lyophilization of the vesicle extract, new...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Hsu HH,Anderson HC

更新日期：1978-08-01 00:00:00

abstract：:Signaling through beta-arrestins is a recently appreciated mechanism used by seven-transmembrane receptors. Because G protein-coupled receptor kinase (GRK) phosphorylation of such receptors is generally a prerequisite for beta-arrestin binding, we studied the roles of different GRKs in promoting beta-arrestin-mediated...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Ren XR,Reiter E,Ahn S,Kim J,Chen W,Lefkowitz RJ

更新日期：2005-02-01 00:00:00

abstract：:Chicken erythrocyte nuclei have been labeled in the active regions of the chromosome by using the nick translation reaction. In this procedure, accessible areas of the genome are preferentially nicked by the action of pancreatic DNase I and subsequently labeled by using DNA polymerase I from Escherichia coli. These nu...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Gazit B,Panet A,Cedar H

更新日期：1980-04-01 00:00:00

abstract：:Let G be a reductive algebraic group and let B be an affine variety with an algebraic action of G. Everything is defined over the field C of complex numbers. Consider the trivial G-vector bundle B x S = S over B where S is a G-module. From the endomorphism ring R of the G-vector bundle S a construction of G-vector bun...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Masuda M,Petrie T

更新日期：1991-10-15 00:00:00

abstract：:A panel of 20 recombinant Fab fragments reactive with the surface glycoprotein gp120 of human type 1 immunodeficiency virus (HIV-1) were examined for their ability to neutralize MN and IIIB strains of the virus. Neutralization was determined as the ability of the Fab fragments to inhibit infection as measured in both ...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Barbas CF 3rd,Björling E,Chiodi F,Dunlop N,Cababa D,Jones TM,Zebedee SL,Persson MA,Nara PL,Norrby E

更新日期：1992-10-01 00:00:00

abstract：:Nitric oxide (NO) biology has focused on the tightly regulated enzymatic mechanism that transforms L-arginine into a family of molecules, which serve both signaling and defense functions. However, very little is known of the pathways that metabolize these molecules or turn off the signals. The paradigm is well exempli...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Hausladen A,Gow AJ,Stamler JS

更新日期：1998-11-24 00:00:00

abstract：:Excessive activation of calmodulin kinase II (CaMKII) causes arrhythmias and heart failure, but the cellular mechanisms for CaMKII-targeted proteins causing disordered cell membrane excitability and myocardial dysfunction remain uncertain. Failing human cardiomyocytes exhibit increased CaMKII and voltage-gated Ca(2+) ...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Koval OM,Guan X,Wu Y,Joiner ML,Gao Z,Chen B,Grumbach IM,Luczak ED,Colbran RJ,Song LS,Hund TJ,Mohler PJ,Anderson ME

更新日期：2010-03-16 00:00:00

abstract：:Engineered calmodulins (CaMs), rendered Ca2+-insensitive by mutations, function as dominant negatives in heterologous systems, and have revealed mechanisms of ion channel modulation by Ca2+/CaM. The use of these CaMs in native mammalian cells now emerges as a strategy to unmask the biology of such Ca2+ feedback. Here,...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Alseikhan BA,DeMaria CD,Colecraft HM,Yue DT

更新日期：2002-12-24 00:00:00