Resource allocation in metabolic networks: kinetic optimization and approximations by FBA.

Abstract:

:Based on recent theoretical results on optimal flux distributions in kinetic metabolic networks, we explore the congruences and differences between solutions of kinetic optimization problems and results obtained by constraint-based methods. We demonstrate that, for a certain resource allocation problem, kinetic optimization and standard flux balance analysis (FBA) give rise to qualitatively different results. Furthermore, we introduce a variant of FBA, called satFBA, whose predictions are in qualitative agreement with kinetic optimization.

journal_name

Biochem Soc Trans

authors

Müller S,Regensburger G,Steuer R

doi

10.1042/BST20150156

subject

Has Abstract

pub_date

2015-12-01 00:00:00

pages

1195-200

issue

6

eissn

0300-5127

issn

1470-8752

pii

BST20150156

journal_volume

43

pub_type

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