Natural cysteine protease inhibitors in protozoa: Fifteen years of the chagasin family.

Abstract:

:Chagasin-type inhibitors comprise natural inhibitors of papain-like cysteine proteases that are distributed among Protist, Bacteria and Archaea. Chagasin was identified in the pathogenic protozoa Trypanosoma cruzi as an approximately 11 kDa protein that is a tight-binding and highly thermostable inhibitor of papain, cysteine cathepsins and endogenous parasite cysteine proteases. It displays an Imunoglobulin-like fold with three exposed loops to one side of the molecule, where amino acid residues present in conserved motifs at the tips of each loop contact target proteases. Differently from cystatins, the loop 2 of chagasin enters the active-site cleft, making direct contact with the catalytic residues, while loops 4 and 6 embrace the enzyme from the sides. Orthologues of chagasin are named Inhibitors of Cysteine Peptidases (ICP), and share conserved overall tri-dimensional structure and mode of binding to proteases. ICPs are tentatively distributed in three families: in family I42 are grouped chagasin-type inhibitors that share conserved residues at the exposed loops; family I71 contains Plasmodium ICPs, which are large proteins having a chagasin-like domain at the C-terminus, with lower similarity to chagasin in the conserved motif at loop 2; family I81 contains Toxoplasma ICP. Recombinant ICPs tested so far can inactivate protozoa cathepsin-like proteases and their mammalian counterparts. Studies on their biological roles were carried out in a few species, mainly using transgenic protozoa, and the conclusions vary. However, in all cases, alterations in the levels of expression of chagasin/ICPs led to substantial changes in one or more steps of parasite biology, with higher incidence in influencing their interaction with the hosts. We will cover most of the findings on chagasin/ICP structural and functional properties and overview the current knowledge on their roles in protozoa.

journal_name

Biochimie

journal_title

Biochimie

authors

Costa TF,Lima AP

doi

10.1016/j.biochi.2015.11.002

subject

Has Abstract

pub_date

2016-03-01 00:00:00

pages

197-207

eissn

0300-9084

issn

1638-6183

pii

S0300-9084(15)00349-1

journal_volume

122

pub_type

杂志文章,评审
  • An active site mutant of Escherichia coli cyclopropane fatty acid synthase forms new non-natural fatty acids providing insights on the mechanism of the enzymatic reaction.

    abstract::We have produced and purified an active site mutant of the Escherichia coli cyclopropane fatty acid synthase (CFAS) by replacing the strictly conserved G236 within cyclopropane synthases, by a glutamate residue, which corresponds to E146 of the homologous mycolic acid methyltransferase, Hma, producing hydroxymethyl my...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2013.08.007

    authors: E G,Drujon T,Correia I,Ploux O,Guianvarc'h D

    更新日期:2013-12-01 00:00:00

  • Tetracycline derivatives resist the assembly behavior of human islet amyloid polypeptide.

    abstract::The misfolding of amyloid proteins is closely correlated with the pathogenesis of protein conformation-related diseases, such as Alzheimer's disease (AD), prion disease, and type 2 diabetes mellitus (T2DM). The deposition of human islet amyloid polypeptide (hIAPP) and amyloid-β (Aβ) protein is entangled in AD and diab...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2020.04.012

    authors: Xu J,Zhao C,Huang X,Du W

    更新日期:2020-07-01 00:00:00

  • Aptamers against extracellular targets for in vivo applications.

    abstract::Oligonucleotides are multifunctional molecules which can interfere with gene expression by different mechanism such as antisense, RNA interference, ribozymes, etc. For most in vivo diagnostic and therapeutic applications, oligonucleotides need to be delivered to the intracellular compartment of a specific organ, a dif...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/j.biochi.2005.04.013

    authors: Pestourie C,Tavitian B,Duconge F

    更新日期:2005-09-01 00:00:00

  • What distinguishes an esterase from a lipase: a novel structural approach.

    abstract::Esterases and lipases both hydrolyse ester bonds. Whereas the lipases display high activity towards the aggregated state of its substrate, the esterases typically show highest activity towards the soluble state of its substrate. We have compared the amino acid sequence, the 3D-structure as well as the pH-dependent ele...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/s0300-9084(00)01188-3

    authors: Fojan P,Jonson PH,Petersen MT,Petersen SB

    更新日期:2000-11-01 00:00:00

  • Iron-related transcriptomic variations in Caco-2 cells: in silico perspectives.

    abstract::The iron absorption by duodenal enterocytes is a key step of its homeostasis. But the control of this absorption is complex and cannot be fully explicated with present knowledge. In a global transcriptome approach, we identified 60 genes over-expressed in hemin (iron) overload in Caco-2 cells, an in vitro model of duo...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2008.01.002

    authors: Aubry M,Monnier A,Chicault C,Galibert MD,Burgun A,Mosser J

    更新日期:2008-04-01 00:00:00

  • Guide RNA modification as a way to improve CRISPR/Cas9-based genome-editing systems.

    abstract::Genome-editing technologies, in particular, CRISPR systems, are widely used for targeted regulation of gene expression and obtaining modified human and animal cell lines, plants, fungi, and animals with preassigned features. Despite being well described and easy to perform, the most common methods for construction and...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/j.biochi.2019.09.003

    authors: Filippova J,Matveeva A,Zhuravlev E,Stepanov G

    更新日期:2019-12-01 00:00:00

  • Studies on the effect of bile salt and colipase on enzymatic lipolysis. Improved method for the determination of pancreatic lipase and colipase.

    abstract::The rate of hydrolysis of long chain triglycerides by pure bovine pancreatic lipase has been determined in the presence of variable amounts of bile salts and colipase. Cofactor-free lipase is strongly inhibited by sodium taurodesoxycholate and by mixed bovine bile salts at concentrations higher than the critical micel...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/s0300-9084(76)80572-x

    authors: Rathelot J,Julien R,Canioni P,Coeroli C,Sarda L

    更新日期:1975-01-01 00:00:00

  • Signal-mediated sorting of neuropeptides and prohormones: secretory granule biogenesis revisited.

    abstract::Neuropeptides and hormones, in contrast to constitutive secretory proteins, are sorted to and stored in secretory granules and released upon a stimulus. During the last two decades, signals and mechanisms involved in their sorting to the regulated pathway of protein secretion have been addressed in numerous studies. T...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/s0300-9084(00)00195-4

    authors: Glombik MM,Gerdes HH

    更新日期:2000-04-01 00:00:00

  • Glucosamine-P and rhodococcal ADP-glucose pyrophosphorylases: A hint to (re)discover (actino)bacterial amino sugar metabolism.

    abstract::Glycogen was described as a temporal storage molecule in rhodococci, interconnecting lipids and carbon availability. The Rhodococcus jostii ADP-glucose pyrophosphorylase (ADP-GlcPPase) kinetic and regulatory properties support this role. Curiously, the enzyme uses glucosamine-1P as alternative substrate. Herein, we re...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2020.07.006

    authors: Cereijo AE,Alvarez HM,Iglesias AA,Asencion Diez MD

    更新日期:2020-09-01 00:00:00

  • Suppression of Neu1 sialidase delays the absorption of yolk sac in medaka (Oryzias latipes) accompanied with the accumulation of α2-3 sialo-glycoproteins.

    abstract::Sialidase catalyzes the removal of sialic acids from glycoconjugates. Recently, medaka sialidase Neu1 has been cloned and its enzymatic properties were investigated. Although enzymatic properties of this sialidase, such as optimal pH and substrate specificity, exhibits high similarity with human NEU1, Neu1 physiologic...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2017.01.008

    authors: Ryuzono S,Takase R,Kamada Y,Ikenaga T,Chigwechokha PK,Komatsu M,Shiozaki K

    更新日期:2017-04-01 00:00:00

  • Identification and biochemical characterization of Rap2C, a new member of the Rap family of small GTP-binding proteins.

    abstract::The Rap family of small GTP-binding proteins is composed by four different members: Rap1A, Rap1B, Rap2A and Rap2B. In this work we report the identification and characterization of a fifth member of this family of small GTPases. This new protein is highly homologous to Rap2A and Rap2B, binds labeled GTP on nitrocellul...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2005.08.007

    authors: Paganini S,Guidetti GF,Catricalà S,Trionfini P,Panelli S,Balduini C,Torti M

    更新日期:2006-03-01 00:00:00

  • Positive and negative regulatory elements in the dnaA-dnaN-recF operon of Escherichia coli.

    abstract::The recF gene of E coli lies within a cluster of genes which play essential roles in DNA replication; the gene order is dnaA dnaN recF gyrB. Each of these genes has its own promoters which, with the exception of dnaA promoters, reside entirely within the translated region of the respective preceding gene. In this repo...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/0300-9084(91)90220-u

    authors: Pérez-Roger I,García-Sogo M,Navarro-Aviñó JP,López-Acedo C,Macián F,Armengod ME

    更新日期:1991-02-01 00:00:00

  • Characterization and primary structure of proteins L28, L33 and L34 from Bacillus stearothermophilus ribosomes.

    abstract::The complete amino acid sequences of 3 proteins from the 50S subunit of Bacillus stearothermophilus ribosomes were determined by N-terminal sequence analysis and by sequencing of overlapping fragments obtained from enzymatic digestions and chemical cleavages. The proteins BstL28, BstL33 and BstL34, named according to ...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/0300-9084(91)90126-l

    authors: Kruft V,Kapp U,Wittmann-Liebold B

    更新日期:1991-07-01 00:00:00

  • New nomenclature of the non-rod-shaped lactic acid bacteria.

    abstract::Bacteria of the Lactococcus (formerly lactic Streptococcus) genus are described to emphasize certain less well-known facts of importance in their successful use as dairy starters. Other streptococci (non-rod forms) are briefly characterized to emphasize their usefulness in industrial milk fermentations. ...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/0300-9084(88)90087-9

    authors: Sandine WE

    更新日期:1988-04-01 00:00:00

  • lncRNA in the liver: Prospects for fundamental research and therapy by RNA interference.

    abstract::Long non-coding RNAs constitute the most abundant part of the transcribed mammalian genome. lncRNAs affect all essential processes in the living cell including transcription, splicing, translation, replication, shaping of chromatin and post translational modification of proteins. Alterations in lncRNA expression have ...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/j.biochi.2016.06.007

    authors: Smekalova EM,Kotelevtsev YV,Leboeuf D,Shcherbinina EY,Fefilova AS,Zatsepin TS,Koteliansky V

    更新日期:2016-12-01 00:00:00

  • Degradation of oxidized proteins by the 20S proteasome.

    abstract::Oxidatively modified proteins are continuously produced in cells by reactive oxygen and nitrogen species generated as a consequence of aerobic metabolism. During periods of oxidative stress, protein oxidation is significantly increased and may become a threat to cell survival. In eucaryotic cells the proteasome has be...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/s0300-9084(01)01250-0

    authors: Davies KJ

    更新日期:2001-03-01 00:00:00

  • Affinity chromatography of the uterine estradiol receptor on estradiol-PAB-cellulose: an artefact.

    abstract::Estradiol-PAB-cellulose, an easily prepared adsorbent, has been proposed to purify the uterine estradiol receptor according to the principle of biospecific affinity chromatography. It apparently removes all hormone binding sites when cytosol preparations are incubated with it. A systematic study of this adsorbent was ...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/s0300-9084(76)80317-3

    authors: Best-Belpomme M,Richard-Foy H,Secco-Millet C,Baulieu EE

    更新日期:1976-01-01 00:00:00

  • Prostaglandin E synthases: Understanding their pathophysiological roles through mouse genetic models.

    abstract::Prostaglandin E synthase (PGES), which converts cyclooxygenase (COX)-derived prostaglandin H(2) (PGH(2)) to PGE(2), is known to comprise a group of at least three structurally and biologically distinct enzymes. Two of them are membrane-bound and have been designated as mPGES-1 and mPGES-2. mPGES-1 is a perinuclear pro...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/j.biochi.2010.02.007

    authors: Hara S,Kamei D,Sasaki Y,Tanemoto A,Nakatani Y,Murakami M

    更新日期:2010-06-01 00:00:00

  • Polymers containing isonitrile functional groups as supports for the covalent fixation of biologically active molecules.

    abstract::1) Isonitrile derivatives of synthetic polyamides, polyesters and polyalcohols, of polysaccharides such as cellulose, cross-linked dextran and agarose, linear dextran and of cross-linked and linear polyacrylamide were prepared. 2) Proteins and low-molecular-weight ligands were bound covalently to these materials by fo...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/s0300-9084(80)80172-6

    authors: Goldstein L

    更新日期:1980-01-01 00:00:00

  • Glutamine induces nuclear degradation of the NF-κB p65 subunit in Caco-2/TC7 cells.

    abstract::In the intestine, NF-κB is the main transcription factor involved in the anti-inflammatory effect of glutamine and we previously demonstrated that glutamine via its conversion to glutamate diminished the p65 protein content in Caco-2/TC7 cell nuclei without affecting the stimulating effect of IL-1β on NF-κB [21]. Howe...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2011.11.012

    authors: Lesueur C,Bôle-Feysot C,Bekri S,Husson A,Lavoinne A,Brasse-Lagnel C

    更新日期:2012-03-01 00:00:00

  • In vitro conversion of porcine thyroid cells growing in monolayer into functional follicular cells.

    abstract::Porcine thyroid cells in primary cultures form either monolayers or, when they are stimulated by thyrotropin (TSH), follicles. This system, monolayer-follicle associated cell culture, determines two morphofunctional states of the thyroid cell in vitro. These cells divide, when grown in monolayer. In this article we de...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/s0300-9084(80)80367-1

    authors: Fayet G,Hovsépian S

    更新日期:1980-01-01 00:00:00

  • Interaction analysis of TcrX/Y two component system from Mycobacterium tuberculosis.

    abstract::TcrX/Y is one of the twelve two component system (TCS) present in Mycobacterium tuberculosis. We have investigated the TcrX/Y interaction by in silico studies, pull down assay, radioactive phosphotransfer, surface plasmon resonance as well as crosstalk analysis of TcrY with TcrA - a non-cognate response regulator. Seq...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2009.11.009

    authors: Bhattacharya M,Biswas A,Das AK

    更新日期:2010-03-01 00:00:00

  • Disintegrins of Crotalus simus tzabcan venom: Isolation, characterization and evaluation of the cytotoxic and anti-adhesion activities of tzabcanin, a new RGD disintegrin.

    abstract::Disintegrins are small non-enzymatic proteins common in the venoms of many viperid snakes. These proteins have received significant attention due to their ability to inhibit platelet aggregation and cell adhesion, making them model compounds in drug development and design investigations. The present study used a combi...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2015.07.005

    authors: Saviola AJ,Modahl CM,Mackessy SP

    更新日期:2015-09-01 00:00:00

  • The effect of thermal injury on the regulation of phosphofructokinase in the mucosa of rat small intestine.

    abstract::The effects of thermal injury (72 h post-injury), 72 h-partial (20% less food) or full starvation on the regulation of phosphofructokinase in the mucosa of rat small intestine were studied. Thermal injury and 72 h-partial or full starvation decreased the activity ratio v0.5/V, but the ratios obtained for thermally inj...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/0300-9084(87)90273-2

    authors: Khoja SM,Ardawi SM

    更新日期:1987-01-01 00:00:00

  • A novel estrogen-regulated avian apolipoprotein.

    abstract::In search for yet uncharacterized proteins involved in lipid metabolism of the chicken, we have isolated a hitherto unknown protein from the serum lipoprotein fraction with a buoyant density of ≤1.063 g/ml. Data obtained by protein microsequencing and molecular cloning of cDNA defined a 537 bp cDNA encoding a precurso...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2013.09.005

    authors: Nikolay B,Plieschnig JA,Subik D,Schneider JD,Schneider WJ,Hermann M

    更新日期:2013-12-01 00:00:00

  • IL-17A suppresses the expression of bone resorption-related proteinases and osteoclast differentiation via IL-17RA or IL-17RC receptors in RAW264.7 cells.

    abstract::Interleukin-17 (IL-17) is produced exclusively by activated T cells and neutrophils, and stimulates osteoclastic bone resorption via osteoblasts by inducing the expression of "receptor activator of NF-kappaB (RANK) ligand" (RANKL). However, the direct effects of IL-17 on the differentiation of osteoclast precursors in...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2009.12.011

    authors: Kitami S,Tanaka H,Kawato T,Tanabe N,Katono-Tani T,Zhang F,Suzuki N,Yonehara Y,Maeno M

    更新日期:2010-04-01 00:00:00

  • RNA editing in higher plant mitochondria: analysis of biochemistry and specificity.

    abstract::RNA editing alters genomically encoded cytidines to uridines posttranscriptionally in higher plant mitochondria. Most of these editing events occur in translated regions and consequently alter the amino acid sequence. In Oenothera berteriana more than 500 editing sites have been detected and the total number of editin...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/0300-9084(96)88108-9

    authors: Yu W,Fester T,Bock H,Schuster W

    更新日期:1995-01-01 00:00:00

  • Characterization of the epitope for 4C4.1 mAb on alpha-latrotoxin using phage display-peptide libraries: prevention of toxin-dependent 45Ca(2+) uptake in non-neuronal human embryonic cells transiently expressing latrophilin.

    abstract::alpha-Latrotoxin, a protein toxin present in the venom of black widow spider, interacts with membrane receptors of neurons and other secretory cells to stimulate exocytosis. Two types of receptors have been identified and cloned. Our attention has been focused on the calcium independent receptor, a G-protein coupled r...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/s0300-9084(00)01170-6

    authors: Pescatori M,Grasso A

    更新日期:2000-09-01 00:00:00

  • Sensitive to apoptosis gene protein regulates ionizing radiation-induced apoptosis.

    abstract::Organisms exposed to ionizing radiation (IR) undergo increases in the production of reactive oxygen species (ROS), which are determinant components in the induction of apoptosis. Sensitive to apoptosis gene (SAG) encodes a redox-inducible and apoptosis-protective antioxidant protein. This report demonstrates that the ...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2010.09.020

    authors: Kim SY,Yang ES,Lee YS,Lee J,Park JW

    更新日期:2011-02-01 00:00:00

  • The pericyte secretome: Potential impact on regeneration.

    abstract::Personalized and regenerative medicine is an emerging therapeutic strategy that is based on cell biology and biomedical engineering used to develop biological substitutes to maintain normal function or restore damaged tissues and organs. The secretory capacities of different cell types are now explored as such possibl...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/j.biochi.2018.04.015

    authors: Gaceb A,Barbariga M,Özen I,Paul G

    更新日期:2018-12-01 00:00:00