Good and bad protons: genetic aspects of acidity stress responses in plants.

Abstract:

:Physiological aspects of acidity stress in plants (synonymous with H(+) rhizotoxicity or low-pH stress) have long been a focus of research, in particular with respect to acidic soils where aluminium and H(+) rhizotoxicities often co-occur. However, toxic H(+) and Al(3+) elicit different response mechanisms in plants, and it is important to consider their effects separately. The primary aim of this review was to provide the current state of knowledge regarding the genetics of the specific reactions to low-pH stress in growing plants. A comparison of the results gleaned from quantitative trait loci analysis and global transcriptome profiling of plants in response to high proton concentrations revealed a two-stage genetic response: (i) in the short-term, proton pump H(+)-ATPases present the first barrier in root cells, allocating an excess of H(+) into either the apoplast or vacuole; the ensuing defence signaling system involves auxin, salicylic acid, and methyl jasmonate, which subsequently initiate expression of STOP and DREB transcription factors as well as chaperone ROF; (2) the long-term response includes other genes, such as alternative oxidase and type II NAD(P)H dehydrogenase, which act to detoxify dangerous reactive oxygen species in mitochondria, and help plants better manage the stress. A range of transporter genes including those for nitrate (NTR1), malate (ALMT1), and heavy metals are often up-regulated by H(+) rhizotoxicity. Expansins, cell-wall-related genes, the γ-aminobutyric acid shunt and biochemical pH-stat genes also reflect changes in cell metabolism and biochemistry in acidic conditions. However, the genetics underlying the acidity stress response of plants is complicated and only fragmentally understood.

journal_name

J Exp Bot

authors

Shavrukov Y,Hirai Y

doi

10.1093/jxb/erv437

subject

Has Abstract

pub_date

2016-01-01 00:00:00

pages

15-30

issue

1

eissn

0022-0957

issn

1460-2431

pii

erv437

journal_volume

67

pub_type

杂志文章,评审
  • Dwarf alleles differentially affect barley root traits influencing nitrogen acquisition under low nutrient supply.

    abstract::Sustainable food production depends critically on the development of crop genotypes that exhibit high yield under reduced nutrient inputs. Rooting traits have been widely advocated as being able to influence optimal plant performance, while breeding-based improvements in yield of spring barley suggest that this specie...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/err089

    authors: Karley AJ,Valentine TA,Squire GR

    更新日期:2011-07-01 00:00:00

  • Accumulation of calcium in the centre of leaves of coriander (Coriandrum sativum L.) is due to an uncoupling of water and ion transport.

    abstract::The aim of this study is to understand the parameters regulating calcium ion distribution in leaves. Accumulation of ions in leaf tissue is in part dependent on import from the xylem. This import via the transpiration stream is more important for ions such as calcium that are xylem but not phloem mobile and cannot the...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/ern279

    authors: Kerton M,Newbury HJ,Hand D,Pritchard J

    更新日期:2009-01-01 00:00:00

  • Natural variation reveals that OsSAP16 controls low-temperature germination in rice.

    abstract::Low temperature affects seed germination in plants, and low-temperature germination (LTG) is an important agronomic trait. Natural variation of LTG has been reported in rice, but the molecular basis for this variation is largely unknown. Here we report the phenotypic analysis of LTG in 187 rice natural accessions and ...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erx413

    authors: Wang X,Zou B,Shao Q,Cui Y,Lu S,Zhang Y,Huang Q,Huang J,Hua J

    更新日期:2018-01-23 00:00:00

  • Gamma-hydroxybutyrate accumulation in Arabidopsis and tobacco plants is a general response to abiotic stress: putative regulation by redox balance and glyoxylate reductase isoforms.

    abstract::Enzymes that reduce the aldehyde chemical grouping (i.e. H-C=O) to its corresponding alcohol are probably crucial in maintaining plant health during stress. Succinic semialdehyde (SSA) is a mitochondrially-generated intermediate in the metabolism of gamma-aminobutyrate (GABA), which accumulates in response to a variet...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/ern122

    authors: Allan WL,Simpson JP,Clark SM,Shelp BJ

    更新日期:2008-01-01 00:00:00

  • Calcium channel CNGC19 mediates basal defense signaling to regulate colonization by Piriformospora indica in Arabidopsis roots.

    abstract::The activation of calcium signaling is a crucial event for perceiving environmental stress. Colonization by Piriformospora indica, a growth-promoting root endosymbiont, activates cytosolic Ca2+ in Arabidopsis roots. In this study, we examined the role and functional relevance of calcium channels responsible for Ca2+ f...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/eraa028

    authors: Jogawat A,Meena MK,Kundu A,Varma M,Vadassery J

    更新日期:2020-05-09 00:00:00

  • Engineering for drought avoidance: expression of maize NADP-malic enzyme in tobacco results in altered stomatal function.

    abstract::Water is a principal limitation to agricultural production during drought and in arid regions of the world. Mechanisms that plants use to cope with drought can be grouped into two different strategies: drought tolerance and drought avoidance. Previous efforts toward engineering plants for improved performance during d...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jexbot/53.369.699

    authors: Laporte MM,Shen B,Tarczynski MC

    更新日期:2002-04-01 00:00:00

  • Root cap removal increases root penetration resistance in maize (Zea mays L).

    abstract::The root cap assists the passage of the root through soil by means of its slimy mucilage secretion and by the sloughing of its outer cells. The root penetration resistance of decapped primary roots of maize (Zea mays L. cv. Mephisto) was compared with that of intact roots in loose (dry bulk density 1.0 g cm-3; penetra...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erg226

    authors: Iijima M,Higuchi T,Barlow PW,Bengough AG

    更新日期:2003-09-01 00:00:00

  • Atypical iron storage in marine brown algae: a multidisciplinary study of iron transport and storage in Ectocarpus siliculosus.

    abstract::Iron is an essential element for all living organisms due to its ubiquitous role in redox and other enzymes, especially in the context of respiration and photosynthesis. The iron uptake and storage systems of terrestrial/higher plants are now reasonably well understood, with two basic strategies for iron uptake being ...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/ers225

    authors: Böttger LH,Miller EP,Andresen C,Matzanke BF,Küpper FC,Carrano CJ

    更新日期:2012-10-01 00:00:00

  • Manipulation of arginase expression modulates abiotic stress tolerance in Arabidopsis: effect on arginine metabolism and ROS accumulation.

    abstract::Arginine is an important medium for the transport and storage of nitrogen, and arginase (also known as arginine amidohydrolase, ARGAH) is responsible for catalyse of arginine into ornithine and urea in plants. In this study, the impact of AtARGAHs on abiotic stress response was investigated by manipulating AtARGAHs ex...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/ers400

    authors: Shi H,Ye T,Chen F,Cheng Z,Wang Y,Yang P,Zhang Y,Chan Z

    更新日期:2013-03-01 00:00:00

  • Genetic identification and genomic organization of factors affecting fruit texture.

    abstract::Fleshy fruits are an essential part of the human diet providing vital vitamins, minerals and other health-promoting compounds. The texture of the ripe fruit has a significant effect on quality and influences consumer acceptance, shelf-life, resistance, and transportability. The development of rational approaches to im...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章,评审

    doi:10.1093/jxb/erf087

    authors: Seymour GB,Manning K,Eriksson EM,Popovich AH,King GJ

    更新日期:2002-10-01 00:00:00

  • Regulation of the calcium-sensing receptor in both stomatal movement and photosynthetic electron transport is crucial for water use efficiency and drought tolerance in Arabidopsis.

    abstract::Production per amount of water used (water use efficiency, WUE) is closely correlated with drought tolerance. Although stomatal aperture can regulate WUE, the underlying molecular mechanisms are still unclear. Previous reports revealed that stomatal closure was inhibited in the calcium-sensing receptor (CAS) antisense...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/ert362

    authors: Wang WH,Chen J,Liu TW,Chen J,Han AD,Simon M,Dong XJ,He JX,Zheng HL

    更新日期:2014-01-01 00:00:00

  • Ca2+-dependent and Ca2+-independent excretion modes of salicylic acid in tobacco cell suspension culture.

    abstract::14C-salicylic acid (SA) was used to monitor SA metabolism and its regulation in tobacco cell suspension culture. Two SA concentrations (20 microM and 200 microM) were used for comparison. SA was quickly taken up in both treatments, and the 200 microM-treated cells absorbed approximately 15 times that of 20 microM-trea...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:

    authors: Chen HJ,Hou WC,Kuć J,Lin YH

    更新日期:2001-06-01 00:00:00

  • MGOUN3: evidence for chromatin-mediated regulation of FLC expression.

    abstract::The MGOUN3(MGO3)/BRUSHY1(BRU1)/TONSOKU(TSK) gene of Arabidopsis thaliana encodes a nuclear leucine-glycine-asparagine (LGN) domain protein that may be implicated in chromatin dynamics and genome maintenance. Mutants with defects in MGO3 display a fasciated stem and disorganized meristem structures. The transition to f...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erj169

    authors: Guyomarc'h S,Benhamed M,Lemonnier G,Renou JP,Zhou DX,Delarue M

    更新日期:2006-01-01 00:00:00

  • Nodulation of Crotalaria podocarpa DC. by Methylobacterium nodulans displays very unusual features.

    abstract::Crotalaria are plants of the Fabaceae family whose nodulation characteristics have been little explored despite the recent discovery of their unexpected ability to be efficiently nodulated in symbiosis with bacteria of the genus Methylobacterium. It has been shown that methylotrophy plays a key role in this unusual sy...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/err083

    authors: Renier A,De Faria SM,Jourand P,Giraud E,Dreyfus B,Rapior S,Prin Y

    更新日期:2011-06-01 00:00:00

  • BjMYB1, a transcription factor implicated in plant defence through activating BjCHI1 chitinase expression by binding to a W-box-like element.

    abstract::We previously identified the W-box-like-4 (Wbl-4) element (GTAGTGACTCAT), one of six Wbl elements in the BjC-P promoter of the unusual chitinase gene BjCHI1 from Brassica juncea, as the core element responsive to fungal infection. Here, we report the isolation and characterization of the cognate transcription factor i...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erw240

    authors: Gao Y,Jia S,Wang C,Wang F,Wang F,Zhao K

    更新日期:2016-08-01 00:00:00

  • Photosynthesis at an extreme end of the leaf trait spectrum: how does it relate to high leaf dry mass per area and associated structural parameters?

    abstract::Leaf dry mass per area (LMA) is a composite parameter relating to a suite of structural traits that have the potential to influence photosynthesis. However, the extent to which each of these traits contributes to variation in LMA and photosynthetic rates is not well understood, especially at the high end of the LMA sp...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erq128

    authors: Hassiotou F,Renton M,Ludwig M,Evans JR,Veneklaas EJ

    更新日期:2010-06-01 00:00:00

  • Leaf-atmosphere NH(3) exchange of white clover (Trifolium repens L.) in relation to mineral N nutrition and symbiotic N(2) fixation.

    abstract::Plant-atmosphere NH(3) exchange was studied in white clover (Trifolium repens L. cv. Seminole) growing in nutrient solution containing 0 (N(2) based), 0.5 (low N) or 4.5 (high N) mM NO(3)(-). The aim was to show whether the NH(3) exchange potential is influenced by the proportion of N(2) fixation relative to NO(3)(-) ...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:

    authors: Herrmann B,Mattsson M,Fuhrer J,Schjoerring JK

    更新日期:2002-01-01 00:00:00

  • Identification of drought responsive proteins and related proteomic QTLs in barley.

    abstract::Drought is a major abiotic stress that negatively influences crop yield. Breeding strategies for improved drought resistance require an improved knowledge of plant drought responses. We therefore applied drought to barley recombinant inbred lines and their parental genotypes shortly before tillering. A large-scale pro...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erz075

    authors: Rodziewicz P,Chmielewska K,Sawikowska A,Marczak Ł,Łuczak M,Bednarek P,Mikołajczak K,Ogrodowicz P,Kuczyńska A,Krajewski P,Stobiecki M

    更新日期:2019-05-09 00:00:00

  • My favourite flowering image.

    abstract::I selected my favourite image from a paper by Professor Friedrich Laibach, the founder of Arabidopsis research. His paper from 1951 is the first paper dealing with natural variation for flowering time in this species, a topic many scientists including myself, have followed up and has resulted in large steps forward in...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/err413

    authors: Koornneef M

    更新日期:2013-12-01 00:00:00

  • Proteomic analysis of salt-stressed tomato (Solanum lycopersicum) seedlings: effect of genotype and exogenous application of glycinebetaine.

    abstract::An investigation aimed at a better understanding of the molecular adaptation mechanisms of salt stress was carried out in 7-d-old tomato Solanum lycopersicum (L.) Mill cultivars Patio and 'F144', using a proteomic approach. Total proteins were extracted from radicles and hypocotyls collected from both non-saline contr...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erp075

    authors: Chen S,Gollop N,Heuer B

    更新日期:2009-01-01 00:00:00

  • Scratching the surface: genetic regulation of cuticle assembly in fleshy fruit.

    abstract::The hydrophobic cuticular membrane of land plants performs a number of important roles during fruit development, including protection from a range of abiotic and biotic stresses. The components of the fleshy fruit cuticle are synthesized and secreted from the epidermal cells. While the biosynthetic and transport pathw...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章,评审

    doi:10.1093/jxb/eru225

    authors: Hen-Avivi S,Lashbrooke J,Costa F,Aharoni A

    更新日期:2014-08-01 00:00:00

  • Molecular plant responses to combined abiotic stresses put a spotlight on unknown and abundant genes.

    abstract::Environmental stresses such as drought, heat, and salinity limit plant development and agricultural productivity. While individual stresses have been studied extensively, much less is known about the molecular interaction of responses to multiple stresses. To address this problem, we investigated molecular responses o...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/eraa250

    authors: Sewelam N,Brilhaus D,Bräutigam A,Alseekh S,Fernie AR,Maurino VG

    更新日期:2020-08-06 00:00:00

  • Hormonal control of shoot branching.

    abstract::Shoot branching is the process by which axillary buds, located on the axil of a leaf, develop and form new flowers or branches. The process by which a dormant bud activates and becomes an actively growing branch is complex and very finely tuned. Bud outgrowth is regulated by the interaction of environmental signals an...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章,评审

    doi:10.1093/jxb/erm134

    authors: Ongaro V,Leyser O

    更新日期:2008-01-01 00:00:00

  • Overexpression of thioredoxin m in tobacco chloroplasts inhibits the protein kinase STN7 and alters photosynthetic performance.

    abstract::The activity of the protein kinase STN7, involved in phosphorylation of the light-harvesting complex II (LHCII) proteins, has been reported as being co-operatively regulated by the redox state of the plastoquinone pool and the ferredoxin-thioredoxin (Trx) system. The present study aims to investigate the role of plast...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/ery415

    authors: Ancín M,Fernández-San Millán A,Larraya L,Morales F,Veramendi J,Aranjuelo I,Farran I

    更新日期:2019-02-05 00:00:00

  • Exogenous γ-aminobutyric acid (GABA) affects pollen tube growth via modulating putative Ca2+-permeable membrane channels and is coupled to negative regulation on glutamate decarboxylase.

    abstract::γ-Aminobutyric acid (GABA) is implicated in pollen tube growth, but the molecular and cellular mechanisms that it mediates are largely unknown. Here, it is shown that exogenous GABA modulates putative Ca(2+)-permeable channels on the plasma membranes of tobacco pollen grains and pollen tubes. Whole-cell voltage-clamp ...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/eru171

    authors: Yu GH,Zou J,Feng J,Peng XB,Wu JY,Wu YL,Palanivelu R,Sun MX

    更新日期:2014-07-01 00:00:00

  • bHLH92 from sheepgrass acts as a negative regulator of anthocyanin/proanthocyandin accumulation and influences seed dormancy.

    abstract::LcbHLH92, a pleiotropic gene from sheepgrass, negatively regulates anthocyanins/proanthocyandins and reduces seed dormancy in transgenic Arabidopsis. ...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/ery335

    authors: Zhao P,Li X,Jia J,Yuan G,Chen S,Qi D,Cheng L,Liu G

    更新日期:2019-01-01 00:00:00

  • Nitro-oxidative metabolism during fruit ripening.

    abstract::Pepper (Capsicum annuum L.) and tomato (Solanum lycopersicum L.), which belong to the Solanaceae family, are among the most cultivated and consumed fleshy fruits worldwide and constitute excellent sources of many essential nutrients, such as vitamins A, C, and E, calcium, and carotenoids. While fruit ripening is a hig...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章,评审

    doi:10.1093/jxb/erx453

    authors: Corpas FJ,Freschi L,Rodríguez-Ruiz M,Mioto PT,González-Gordo S,Palma JM

    更新日期:2018-06-19 00:00:00

  • A bacterial quercetin oxidoreductase QuoA-mediated perturbation in the phenylpropanoid metabolic network increases lignification with a concomitant decrease in phenolamides in Arabidopsis.

    abstract::Metabolic perturbations by a gain-of-function approach provide a means to alter steady states of metabolites and query network properties, while keeping enzyme complexes intact. A combination of genetic and targeted metabolomics approach was used to understand the network properties of phenylpropanoid secondary metabo...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/ert310

    authors: Reuben S,Rai A,Pillai BV,Rodrigues A,Swarup S

    更新日期:2013-11-01 00:00:00

  • Hemoglobin LjGlb1-1 is involved in nodulation and regulates the level of nitric oxide in the Lotus japonicus-Mesorhizobium loti symbiosis.

    abstract::Leghemoglobins transport and deliver O2 to the symbiosomes inside legume nodules and are essential for nitrogen fixation. However, the roles of other hemoglobins (Hbs) in the rhizobia-legume symbiosis are unclear. Several Lotus japonicus mutants affecting LjGlb1-1, a non-symbiotic class 1 Hb, have been used to study t...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erw290

    authors: Fukudome M,Calvo-Begueria L,Kado T,Osuki K,Rubio MC,Murakami E,Nagata M,Kucho K,Sandal N,Stougaard J,Becana M,Uchiumi T

    更新日期:2016-09-01 00:00:00

  • Fluxes in central carbohydrate metabolism of source leaves in a fructan-storing C3 grass: rapid turnover and futile cycling of sucrose in continuous light under contrasted nitrogen nutrition status.

    abstract::This work assessed the central carbohydrate metabolism of actively photosynthesizing leaf blades of a C3 grass (Lolium perenne L.). The study used dynamic (13)C labelling of plants growing in continuous light with contrasting supplies of nitrogen ('low N' and 'high N') and mathematical analysis of the tracer data with...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/ers020

    authors: Lattanzi FA,Ostler U,Wild M,Morvan-Bertrand A,Decau ML,Lehmeier CA,Meuriot F,Prud'homme MP,Schäufele R,Schnyder H

    更新日期:2012-03-01 00:00:00