Small Molecule Inhibition of miR-544 Biogenesis Disrupts Adaptive Responses to Hypoxia by Modulating ATM-mTOR Signaling.

Abstract:

:Hypoxia induces a complex circuit of gene expression that drives tumor progression and increases drug resistance. Defining these changes allows for an understanding of how hypoxia alters tumor biology and informs design of lead therapeutics. We probed the role of microRNA-544 (miR-544), which silences mammalian target of rapamycin (mTOR), in a hypoxic breast cancer model by using a small molecule (1) that selectively impedes the microRNA's biogenesis. Application of 1 to hypoxic tumor cells selectively inhibited production of the mature microRNA, sensitized cells to 5-fluorouracil, and derepressed mRNAs affected by miR-544 in cellulo and in vivo, including boosting mTOR expression. Thus, small molecule inhibition of miR-544 reverses a tumor cell's physiological response to hypoxia. Importantly, 1 sensitized tumor cells to hypoxia-associated apoptosis at a 25-fold lower concentration than a 2'-O-methyl RNA antagomir and was as selective. Further, the apoptotic effect of 1 was suppressed by treatment of cell with rapamycin, a well-known inhibitor of the mTOR signaling pathway, illustrating the selectivity of the compound. Thus, RNA-directed chemical probes, which could also serve as lead therapeutics, enable interrogation of complex cellular networks in cells and animals.

journal_name

ACS Chem Biol

journal_title

ACS chemical biology

authors

Haga CL,Velagapudi SP,Strivelli JR,Yang WY,Disney MD,Phinney DG

doi

10.1021/acschembio.5b00265

subject

Has Abstract

pub_date

2015-10-16 00:00:00

pages

2267-76

issue

10

eissn

1554-8929

issn

1554-8937

journal_volume

10

pub_type

杂志文章
  • Cell-Penetrating Peptides Escape the Endosome by Inducing Vesicle Budding and Collapse.

    abstract::Cell-penetrating peptides (CPPs) are capable of delivering membrane-impermeable cargoes (including small molecules, peptides, proteins, nucleic acids, and nanoparticles) into the cytosol of mammalian cells and have the potential to revolutionize biomedical research and drug discovery. However, the mechanism of action ...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.0c00478

    authors: Sahni A,Qian Z,Pei D

    更新日期:2020-09-18 00:00:00

  • Structural Studies Revealed Active Site Distortions of Human Furin by a Small Molecule Inhibitor.

    abstract::Proprotein convertases (PCs) represent highly selective serine proteases that activate their substrates upon proteolytic cleavage. Their inhibition is a promising strategy for the treatment of several pathologies including cancer, atherosclerosis, hypercholesterolaemia, and infectious diseases. Here, we present the fi...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.6b01110

    authors: Dahms SO,Jiao GS,Than ME

    更新日期:2017-05-19 00:00:00

  • Biological matching of chemical reactivity: pairing indole nucleophilicity with electrophilic isoprenoids.

    abstract::The indole side chain of tryptophan has latent nucleophilic reactivity at both N1 and all six (nonbridgehead) carbons, which is not generally manifested in post-translational reactions of proteins. On the other hand, all seven positions can be prenylated by the primary metabolite Δ(2)-isopentenyl diphosphate by dimeth...

    journal_title:ACS chemical biology

    pub_type: 杂志文章,评审

    doi:10.1021/cb500695k

    authors: Walsh CT

    更新日期:2014-12-19 00:00:00

  • Lipid nanoparticles improve activity of single-stranded siRNA and gapmer antisense oligonucleotides in animals.

    abstract::We evaluated the abilities of an antisense oligonucleotide (ASO), a small interfering RNA (siRNA), and a single-stranded siRNA (ss-siRNA) to inhibit expression from the PTEN gene in mice when formulated identically with lipid nanoparticles (LNPs). Significantly greater reductions in levels of PTEN mRNA were observed f...

    journal_title:ACS chemical biology

    pub_type: 信件

    doi:10.1021/cb4001316

    authors: Prakash TP,Lima WF,Murray HM,Elbashir S,Cantley W,Foster D,Jayaraman M,Chappell AE,Manoharan M,Swayze EE,Crooke ST

    更新日期:2013-07-19 00:00:00

  • DprE1 Is a Vulnerable Tuberculosis Drug Target Due to Its Cell Wall Localization.

    abstract::The flavo-enzyme DprE1 catalyzes a key epimerization step in the decaprenyl-phosphoryl d-arabinose (DPA) pathway, which is essential for mycobacterial cell wall biogenesis and targeted by several new tuberculosis drug candidates. Here, using differential radiolabeling with DPA precursors and high-resolution fluorescen...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.5b00237

    authors: Brecik M,Centárová I,Mukherjee R,Kolly GS,Huszár S,Bobovská A,Kilacsková E,Mokošová V,Svetlíková Z,Šarkan M,Neres J,Korduláková J,Cole ST,Mikušová K

    更新日期:2015-07-17 00:00:00

  • Esterase-Triggered Self-Immolative Thiocarbamates Provide Insights into COS Cytotoxicity.

    abstract::Hydrogen sulfide (H2S) is an important gasotransmitter and biomolecule, and many synthetic small-molecule H2S donors have been developed for H2S-related research. One important class of triggerable H2S donors is self-immolative thiocarbamates, which function by releasing carbonyl sulfide (COS), which is rapidly conver...

    journal_title:ACS chemical biology

    pub_type: 信件

    doi:10.1021/acschembio.8b00981

    authors: Levinn CM,Steiger AK,Pluth MD

    更新日期:2019-02-15 00:00:00

  • Repair of Alkylation Damage in Eukaryotic Chromatin Depends on Searching Ability of Alkyladenine DNA Glycosylase.

    abstract::Human alkyladenine DNA glycosylase (AAG) initiates the base excision repair pathway by excising alkylated and deaminated purine lesions. In vitro biochemical experiments demonstrate that AAG uses facilitated diffusion to efficiently search DNA to find rare sites of damage and suggest that electrostatic interactions ar...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.5b00409

    authors: Zhang Y,O'Brien PJ

    更新日期:2015-11-20 00:00:00

  • Enzymatic Plasticity Inspired by the Diterpene Cyclase CotB2.

    abstract::Enzymatic plasticity, as a modern term referring to the functional conversion of an enzyme, is significant for enzymatic activity redesign. The bacterial diterpene cyclase CotB2 is a typical plastic enzyme by which its native form precisely conducts a chemical reaction while its mutants diversify the catalytic functio...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.0c00645

    authors: Tang X,Zhang F,Zeng T,Li W,Yin S,Wu R

    更新日期:2020-10-16 00:00:00

  • Invertebrate animal models of diseases as screening tools in drug discovery.

    abstract::Invertebrate animal models (mainly the nematode Caenorhabditis elegans and the fruit fly Drosophila melanogaster) are gaining momentum as screening tools in drug discovery. These organisms combine genetic amenability, low cost, and culture conditions compatible with large-scale screens. Their main advantage is to allo...

    journal_title:ACS chemical biology

    pub_type: 杂志文章,评审

    doi:10.1021/cb700009m

    authors: Ségalat L

    更新日期:2007-04-24 00:00:00

  • Site-Specific Radiofluorination of Biomolecules with 8-[(18)F]-Fluorooctanoic Acid Catalyzed by Lipoic Acid Ligase.

    abstract::New methodologies for site-specifically radiolabeling proteins with (18)F are required to generate high quality radiotracers for preclinical and clinical applications with positron emission tomography. Herein, we report an approach by which we use lipoic acid ligase (LplA) to conjugate [(18)F]-fluorooctanoic acid to a...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.6b00172

    authors: Drake CR,Sevillano N,Truillet C,Craik CS,VanBrocklin HF,Evans MJ

    更新日期:2016-06-17 00:00:00

  • Construction of a rhythm transfer system that mimics the cellular clock.

    abstract::Creation of an artificial oscillating gene expression system is one of the most challenging issues in synthetic biology. Here, we constructed a simple system to manipulate gene expression patterns to be circadian, reflecting the intrinsic cellular clock, by fusing a core clock protein, BMAL1 or CLOCK, with a zinc fing...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb300432s

    authors: Imanishi M,Yamamoto K,Yamada H,Hirose Y,Okamura H,Futaki S

    更新日期:2012-11-16 00:00:00

  • Seeing is believing.

    abstract::Modern visualization techniques are affording a peek into complex cellular processes. A recent paper describes an automated fluorescence microscopy method to map the subcellular localization of up to 100 different proteins in the same sample. ...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb600461v

    authors: Jacquier V,Michnick SW

    更新日期:2006-12-15 00:00:00

  • Iron Uptake Oxidoreductase (IruO) Uses a Flavin Adenine Dinucleotide Semiquinone Intermediate for Iron-Siderophore Reduction.

    abstract::Many pathogenic bacteria including Staphylococcus aureus use iron-chelating siderophores to acquire iron. Iron uptake oxidoreductase (IruO), a flavin adenine dinucleotide (FAD)-containing nicotinamide adenine dinucleotide phosphate (NADPH)-dependent reductase from S. aureus, functions as a reductase for IsdG and IsdI,...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.7b00203

    authors: Kobylarz MJ,Heieis GA,Loutet SA,Murphy MEP

    更新日期:2017-07-21 00:00:00

  • Engineering the polyproline II propensity of a class II major histocompatibility complex ligand peptide.

    abstract::Our immune system constantly samples peptides found inside the body as a means to detect foreign pathogens, infected cells, and tumorous cells. T cells, which carry out the critical task of distinguishing self from nonself peptides, can only survey peptides that are presented by the major histocompatibility complex pr...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb400594q

    authors: Unudurthi SD,Hotta K,Kim CY

    更新日期:2013-11-15 00:00:00

  • Allostery, Recognition of Nascent Peptidoglycan, and Cross-linking of the Cell Wall by the Essential Penicillin-Binding Protein 2x of Streptococcus pneumoniae.

    abstract::Transpeptidases, members of the penicillin-binding protein (PBP) families, catalyze cross-linking of the bacterial cell wall. This transformation is critical for the survival of bacteria, and it is the target of inhibition by β-lactam antibiotics. We report herein our structural insights into catalysis by the essentia...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.7b00817

    authors: Bernardo-García N,Mahasenan KV,Batuecas MT,Lee M,Hesek D,Petráčková D,Doubravová L,Branny P,Mobashery S,Hermoso JA

    更新日期:2018-03-16 00:00:00

  • Reaction mechanism of N-acetylneuraminic acid lyase revealed by a combination of crystallography, QM/MM simulation, and mutagenesis.

    abstract::N-Acetylneuraminic acid lyase (NAL) is a Class I aldolase that catalyzes the reversible condensation of pyruvate with N-acetyl-d-mannosamine (ManNAc) to yield the sialic acid N-acetylneuraminic acid (Neu5Ac). Aldolases are finding increasing use as biocatalysts for the stereospecific synthesis of complex molecules. In...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb500067z

    authors: Daniels AD,Campeotto I,van der Kamp MW,Bolt AH,Trinh CH,Phillips SE,Pearson AR,Nelson A,Mulholland AJ,Berry A

    更新日期:2014-04-18 00:00:00

  • Price for Opening the Transient Specificity Pocket in Human Aldose Reductase upon Ligand Binding: Structural, Thermodynamic, Kinetic, and Computational Analysis.

    abstract::Insights into the thermodynamic and kinetic signature of the transient opening of a protein-binding pocket resulting from accommodation of suitable substituents attached to a given parent ligand scaffold are presented. As a target, we selected human aldose reductase, an enzyme involved in the development of late-stage...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.7b00062

    authors: Rechlin C,Scheer F,Terwesten F,Wulsdorf T,Pol E,Fridh V,Toth P,Diederich WE,Heine A,Klebe G

    更新日期:2017-05-19 00:00:00

  • 3-Oxo-β-sultam as a Sulfonylating Chemotype for Inhibition of Serine Hydrolases and Activity-Based Protein Profiling.

    abstract::3-Oxo-β-sultams are four-membered ring ambident electrophiles that can react with nucleophiles either at the carbonyl carbon or at the sulfonyl sulfur atoms, and that have been reported to inhibit serine hydrolases via acylation of the active-site serine residue. We have developed a panel of 3-oxo-β-sultam inhibitors ...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.0c00090

    authors: Carvalho LAR,Almeida VT,Brito JA,Lum KM,Oliveira TF,Guedes RC,Gonçalves LM,Lucas SD,Cravatt BF,Archer M,Moreira R

    更新日期:2020-04-17 00:00:00

  • Fragment Assembly Approach Based on Graph/Network Theory with Quantum Chemistry Verifications for Assigning Multidimensional NMR Signals in Metabolite Mixtures.

    abstract::The abundant observation of chemical fragment information for molecular complexities is a major advantage of biological NMR analysis. Thus, the development of a novel technique for NMR signal assignment and metabolite identification may offer new possibilities for exploring molecular complexities. We propose a new sig...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.5b00894

    authors: Ito K,Tsutsumi Y,Date Y,Kikuchi J

    更新日期:2016-04-15 00:00:00

  • On-chip synthesis and screening of a sialoside library yields a high affinity ligand for Siglec-7.

    abstract::The Siglec family of sialic acid-binding proteins are differentially expressed on white blood cells of the immune system and represent an attractive class of targets for cell-directed therapy. Nanoparticles decorated with high-affinity Siglec ligands show promise for delivering cargo to Siglec-bearing cells, but this ...

    journal_title:ACS chemical biology

    pub_type: 信件

    doi:10.1021/cb400125w

    authors: Rillahan CD,Schwartz E,Rademacher C,McBride R,Rangarajan J,Fokin VV,Paulson JC

    更新日期:2013-07-19 00:00:00

  • siRNA screen identifies the phosphatase acting on the G protein-coupled thyrotropin-releasing hormone receptor.

    abstract::G protein-coupled receptors (GPCRs) are an ubiquitously expressed class of transmembrane proteins involved in the signal transduction of neurotransmitters, hormones and various other ligands. Their signaling output is desensitized by mechanisms involving phosphorylation, internalization, and dissociation from G protei...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb3004513

    authors: Gehret AU,Hinkle PM

    更新日期:2013-03-15 00:00:00

  • Activation of the NLRP3 Inflammasome by Hyaboron, a New Asymmetric Boron-Containing Macrodiolide from the Myxobacterium Hyalangium minutum.

    abstract::A Natural Compound Library containing myxobacterial secondary metabolites was screened in murine macrophages for novel activators of IL-1β maturation and secretion. The most potent of three hits in total was a so far undescribed metabolite, which was identified from the myxobacterium Hyalangium minutum strain Hym3. Wh...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.8b00659

    authors: Surup F,Chauhan D,Niggemann J,Bartok E,Herrmann J,Keck M,Zander W,Stadler M,Hornung V,Müller R

    更新日期:2018-10-19 00:00:00

  • Enzymatic synthesis of polybrominated dioxins from the marine environment.

    abstract::Polyhalogenated dibenzo-p-dioxins are arguably among the most toxic molecules known to man. In addition to anthropogenic sources, marine invertebrates also harbor polybrominated dibenzo-p-dioxins of as yet unknown biogenic origin. Here, we report that the bmp gene locus in marine bacteria, a recently characterized sou...

    journal_title:ACS chemical biology

    pub_type: 信件

    doi:10.1021/cb5004338

    authors: Agarwal V,Moore BS

    更新日期:2014-09-19 00:00:00

  • ANS binding reveals common features of cytotoxic amyloid species.

    abstract::Oligomeric assemblies formed from a variety of disease-associated peptides and proteins have been strongly associated with toxicity in many neurodegenerative conditions, such as Alzheimer's disease. The precise nature of the toxic agents, however, remains still to be established. We show that prefibrillar aggregates o...

    journal_title:ACS chemical biology

    pub_type: 信件

    doi:10.1021/cb1001203

    authors: Bolognesi B,Kumita JR,Barros TP,Esbjorner EK,Luheshi LM,Crowther DC,Wilson MR,Dobson CM,Favrin G,Yerbury JJ

    更新日期:2010-08-20 00:00:00

  • Competitive binding of a benzimidazole to the histone-binding pocket of the Pygo PHD finger.

    abstract::The Pygo-BCL9 complex is a chromatin reader, facilitating β-catenin-mediated oncogenesis, and is thus emerging as a potential therapeutic target for cancer. Its function relies on two ligand-binding surfaces of Pygo's PHD finger that anchor the histone H3 tail methylated at lysine 4 (H3K4me) with assistance from the B...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb500585s

    authors: Miller TC,Rutherford TJ,Birchall K,Chugh J,Fiedler M,Bienz M

    更新日期:2014-12-19 00:00:00

  • Cyanobacterial Dihydroxyacid Dehydratases Are a Promising Growth Inhibition Target.

    abstract::Microbes are essential to the global ecosystem, but undesirable microbial growth causes issues ranging from food spoilage and infectious diseases to harmful cyanobacterial blooms. The use of chemicals to control microbial growth has achieved significant success, while specific roles for a majority of essential genes i...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.0c00507

    authors: Zhang P,MacTavish BS,Yang G,Chen M,Roh J,Newsome KR,Bruner SD,Ding Y

    更新日期:2020-08-21 00:00:00

  • Exploiting structural analysis, in silico screening, and serendipity to identify novel inhibitors of drug-resistant falciparum malaria.

    abstract::Plasmodium falciparum thymidylate synthase-dihydrofolate reductase (TS-DHFR) is an essential enzyme in folate biosynthesis and a major malarial drug target. This bifunctional enzyme thus presents different design approaches for developing novel inhibitors against drug-resistant mutants. We performed a high-throughput ...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb8002804

    authors: Dasgupta T,Chitnumsub P,Kamchonwongpaisan S,Maneeruttanarungroj C,Nichols SE,Lyons TM,Tirado-Rives J,Jorgensen WL,Yuthavong Y,Anderson KS

    更新日期:2009-01-16 00:00:00

  • Structural Basis of Substrate Specificity in Geobacter metallireducens SMUG1.

    abstract::Base deamination is a common type of DNA damage that occurs in all organisms. DNA repair mechanisms are critical to maintain genome integrity, in which the base excision repair pathway plays an essential role. In the BER pathway, the uracil DNA glycosylase superfamily is responsible for removing the deaminated bases f...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.6b00164

    authors: Zhang Z,Shen J,Yang Y,Li J,Cao W,Xie W

    更新日期:2016-06-17 00:00:00

  • Extreme entropy-enthalpy compensation in a drug-resistant variant of HIV-1 protease.

    abstract::The development of HIV-1 protease inhibitors has been the historic paradigm of rational structure-based drug design, where structural and thermodynamic analyses have assisted in the discovery of novel inhibitors. While the total enthalpy and entropy change upon binding determine the affinity, often the thermodynamics ...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb300191k

    authors: King NM,Prabu-Jeyabalan M,Bandaranayake RM,Nalam MN,Nalivaika EA,Özen A,Haliloğlu T,Yilmaz NK,Schiffer CA

    更新日期:2012-09-21 00:00:00

  • Reporter enzyme inhibitor study to aid assembly of orthogonal reporter gene assays.

    abstract::Reporter gene assays (RGAs) are commonly used to measure biological pathway modulation by small molecules. Understanding how such compounds interact with the reporter enzyme is critical to accurately interpret RGA results. To improve our understanding of reporter enzymes and to develop optimal RGA systems, we investig...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb3007264

    authors: Ho PI,Yue K,Pandey P,Breault L,Harbinski F,McBride AJ,Webb B,Narahari J,Karassina N,Wood KV,Hill A,Auld DS

    更新日期:2013-05-17 00:00:00