Ubiquitin-specific Protease 15 Negatively Regulates Virus-induced Type I Interferon Signaling via Catalytically-dependent and -independent Mechanisms.

Abstract:

:Viral infection triggers a series of signaling cascades, which converge to activate the transcription factors nuclear factor-κB (NF-κB) and interferon regulatory factor 3 (IRF3), thereby inducing the transcription of type I interferons (IFNs). Although not fully characterized, these innate antiviral responses are fine-tuned by dynamic ubiquitination and deubiquitination processes. In this study, we report ubiquitin-specific protease (USP) 15 is involved in regulation of the retinoic acid-inducible gene I (RIG-I)-dependent type I IFN induction pathway. Knockdown of endogenous USP15 augmented cellular antiviral responses. Overexpression of USP15 inhibited the transcription of IFN-β. Further analyses identified histidine 862 as a critical residue for USP15's catalytic activity. Interestingly, USP15 specifically removed lysine 63-linked polyubiquitin chains from RIG-I among the essential components in RIG-I-like receptor-dependent pathway. In addition, we demonstrated that in contrast to USP15 de-ubiquitinating (DUB) activity, USP15-mediated inhibition of IFN signaling was not abolished by mutations eliminating the catalytic activity, indicating that a fraction of USP15-mediated IFN antagonism was independent of the DUB activity. Catalytically inactive USP15 mutants, as did the wild-type protein, disrupted virus-induced interaction of RIG-I and IFN-β promoter stimulator 1. Taken together, our data demonstrate that USP15 acts as a negative regulator of RIG-I signaling via DUB-dependent and independent mechanisms.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Zhang H,Wang D,Zhong H,Luo R,Shang M,Liu D,Chen H,Fang L,Xiao S

doi

10.1038/srep11220

subject

Has Abstract

pub_date

2015-06-10 00:00:00

pages

11220

issn

2045-2322

pii

srep11220

journal_volume

5

pub_type

杂志文章
  • Core promoter information content correlates with optimal growth temperature.

    abstract::The subtle mechanisms by which protein-DNA interactions remain functional across a wide range of temperatures are largely unknown. In this work, we manually curated available information relating fully sequenced archaeal genomes with organism growth temperatures. We built a motif that represents the core promoter of e...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-19495-8

    authors: Aptekmann AA,Nadra AD

    更新日期:2018-01-22 00:00:00

  • Oxidative status and intestinal health of gilthead sea bream (Sparus aurata) juveniles fed diets with different ARA/EPA/DHA ratios.

    abstract::The present work assessed the effects of dietary ratios of essential fatty acids, arachidonic (ARA), eicosapentaenoic (EPA) and docosahexaenoic acid (DHA), on liver and intestine oxidative status, intestinal histomorphology and gut microbiota of gilthead sea bream. Four isoproteic and isolipidic plant-based diets were...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-70716-5

    authors: Magalhães R,Guerreiro I,Santos RA,Coutinho F,Couto A,Serra CR,Olsen RE,Peres H,Oliva-Teles A

    更新日期:2020-08-14 00:00:00

  • Forecasting Events in the Complex Dynamics of a Semiconductor Laser with Optical Feedback.

    abstract::Complex systems performing spiking dynamics are widespread in Nature. They cover from earthquakes, to neurons, variable stars, social networks, or stock markets. Understanding and characterizing their dynamics is relevant in order to detect transitions, or to predict unwanted extreme events. Here we study, under an or...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-29110-5

    authors: Colet M,Aragoneses A

    更新日期:2018-07-16 00:00:00

  • Green tide development associated with submarine groundwater discharge in a coastal harbor, Jeju, Korea.

    abstract::We measured the magnitude of submarine fresh groundwater discharge (SFGD) and associated nutrient inputs to Jocheon harbor, on Jeju Island, Korea, during four sampling periods, in order to determine the link between SFGD and Ulva sp. green tide development. Good correlations among salinity, 222Rn, and dissolved inorga...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-06711-0

    authors: Kwon HK,Kang H,Oh YH,Park SR,Kim G

    更新日期:2017-07-24 00:00:00

  • Distinguishing butchery cut marks from crocodile bite marks through machine learning methods.

    abstract::All models of evolution of human behaviour depend on the correct identification and interpretation of bone surface modifications (BSM) on archaeofaunal assemblages. Crucial evolutionary features, such as the origin of stone tool use, meat-eating, food-sharing, cooperation and sociality can only be addressed through co...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-24071-1

    authors: Domínguez-Rodrigo M,Baquedano E

    更新日期:2018-04-10 00:00:00

  • High-performance varistors simply by hot-dipping zinc oxide thin films in Pr6O11: Influence of temperature.

    abstract::High-performance ZnO-Pr6O11 thin-film varistors were fabricated simply by hot-dipping oxygen-deficient zinc oxide thin films in Pr6O11 powder. The films had a composition of ZnO0.81 and a thickness of about 200 nm, which were deposited by radio frequency magnetron sputtering a sintered zinc oxide ceramic target. Speci...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep41994

    authors: Wang Y,Peng Z,Wang Q,Wang C,Fu X

    更新日期:2017-02-03 00:00:00

  • A novel ex vivo tumor system identifies Src-mediated invasion and metastasis in mesenchymal tumor cells in non-small cell lung cancer.

    abstract::Lung cancer is the foremost cause of cancer related deaths in the U.S. It is a heterogeneous disease composed of genetically and phenotypically distinct tumor cells surrounded by heterotypic cells and extracellular matrix dynamically interacting with the tumor cells. Research in lung cancer is often restricted to pati...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-41301-2

    authors: Padhye A,Ungewiss C,Fradette JJ,Rodriguez BL,Albritton JL,Miller JS,Gibbons DL

    更新日期:2019-03-20 00:00:00

  • Binocular summation of chance decisions.

    abstract::Seeing with two eyes usually helps one respond faster. Here we show that with ambiguous stimuli, binocular viewing can paradoxically slow down reaction time. This is explained by the observers basing their decision on a noisy neuronal representation within the visual system, with the added noise breaking the symmetry ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep16799

    authors: Yehezkel O,Sterkin A,Sagi D,Polat U

    更新日期:2015-11-18 00:00:00

  • Microplastic contamination of table salts from Taiwan, including a global review.

    abstract::Plastic pollution is a rapidly worsening environmental problem, especially in oceanic habitats. Environmental pollution with microplastic particles is also causing food consumed by humans to be increasingly polluted, including table salts. Therefore, we present the first study which focuses only on table salt products...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-46417-z

    authors: Lee H,Kunz A,Shim WJ,Walther BA

    更新日期:2019-07-12 00:00:00

  • Cost-effectiveness of newer technologies for the diagnosis of Mycobacterium tuberculosis infection in Brazilian people living with HIV.

    abstract::Tuberculosis is the leading cause of death among people living with HIV (PLH). Preventive tuberculosis therapy reduces mortality in PLH, especially in those with a positive tuberculin skin test (TST). New, more specific technologies for detecting latent tuberculosis infection (LTBI) are now commercially available. We ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-78737-w

    authors: Steffen RE,Pinto M,Kritski A,Trajman A

    更新日期:2020-12-11 00:00:00

  • SGA as a Risk Factor for Cerebral Palsy in Moderate to Late Preterm Infants: a System Review and Meta-analysis.

    abstract::Small for gestational age (SGA) is an established risk factor for cerebral palsy (CP) in term infants. However, there is conflicting data on the association between SGA and CP in moderate to late preterm infants. The aim of the article was to explore the relationship between SGA and CP in the moderate to late preterm ...

    journal_title:Scientific reports

    pub_type: 杂志文章,meta分析,评审

    doi:10.1038/srep38853

    authors: Zhao M,Dai H,Deng Y,Zhao L

    更新日期:2016-12-13 00:00:00

  • Syllables are Retrieved before Segments in the Spoken Production of Mandarin Chinese: An ERP Study.

    abstract::Languages may differ in terms of the functional units of word-form encoding used in spoken word production. It is widely accepted that segments are the primary units used in Indo-European languages. However, it is controversial what the functional units (syllables or segments) in Chinese spoken word production are. In...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-48033-3

    authors: Feng C,Yue Y,Zhang Q

    更新日期:2019-08-13 00:00:00

  • RNA-Seq-based transcriptome analysis of methicillin-resistant Staphylococcus aureus biofilm inhibition by ursolic acid and resveratrol.

    abstract::Bacterial biofilms are particularly problematic since they become resistant to most available antibiotics. Hence, novel potential antagonists to inhibit biofilm formation are urgent. Here the influences of two natural products, ursolic acid and resveratrol, on biofilm of the clinical methicillin-resistant Staphylococc...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep05467

    authors: Qin N,Tan X,Jiao Y,Liu L,Zhao W,Yang S,Jia A

    更新日期:2014-06-27 00:00:00

  • A Broadly Cross-protective Vaccine Presenting the Neighboring Epitopes within the VP1 GH Loop and VP2 EF Loop of Enterovirus 71.

    abstract::Human enterovirus 71 (EV71) and coxsackievirus A16 (CA16) are the major etiological agents of hand, foot and mouth disease (HFMD) and are often associated with neurological complications. Currently, several vaccine types are being developed for EV71 and CA16. In this study, we constructed a bivalent chimeric virus-lik...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep12973

    authors: Xu L,He D,Yang L,Li Z,Ye X,Yu H,Zhao H,Li S,Yuan L,Qian H,Que Y,Kuo Shih JW,Zhu H,Li Y,Cheng T,Xia N

    更新日期:2015-08-05 00:00:00

  • Extraintestinal pathogenic Escherichia coli are associated with intestinal inflammation in patients with ulcerative colitis.

    abstract::E. coli of the phylogenetic group B2 harbouring Extra intestinal Pathogenic Escherichia coli (ExPEC) genes are frequently seen as colonizers of the intestine in patients with active ulcerative colitis (UC). In this study, we describe the influence of E. coli Nissle (EcN) B2 as add-on treatment to conventional therapie...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep31152

    authors: Mirsepasi-Lauridsen HC,Halkjaer SI,Mortensen EM,Lydolph MC,Nordgaard-Lassen I,Krogfelt KA,Petersen AM

    更新日期:2016-09-30 00:00:00

  • Roles of the semisolid heating on the microstructure of a hypereutectic Al-Fe-Cu alloy.

    abstract::A hypereutectic Al-Fe-Cu alloy with a high-volume fraction ferro-aluminum second phase (AlFe phases for short) was reheated in the solid-liquid region and the microstructure evolution was investigated. During semisolid heating, the high-melting AlFe phases in the Al-Fe-Cu alloy were demonstrated to stunt the grain gro...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-021-80983-5

    authors: Wang W,Liu B

    更新日期:2021-01-15 00:00:00

  • The Effect of Functional and Intra-Coronary Imaging Techniques on Fluoroscopy Time, Radiation Dose and Contrast Volume during Coronary Angiography.

    abstract::The aim was to analyze the effect of fractional flow reserve (FFR), intravascular ultrasound (IVUS) and optical coherence tomography (OCT) on fluoroscopy time (FT), radiation dose (RD) and contrast volume (CV) in patients undergoing coronary angiography. This case-control study included consecutive patients above the ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-63791-1

    authors: De la Garza-Salazar F,Lankenau-Vela DL,Cadena-Nuñez B,González-Cantú A,Romero-Ibarguengoitia ME

    更新日期:2020-04-24 00:00:00

  • Comparative proteomics reveals abnormal binding of ATGL and dysferlin on lipid droplets from pressure overload-induced dysfunctional rat hearts.

    abstract::Excessive retention of neutral lipids in cardiac lipid droplets (LDs) is a common observation in cardiomyopathy. Thus, the systematic investigation of the cardiac LD proteome will help to dissect the underlying mechanisms linking cardiac steatosis and myocardial dysfunction. Here, after isolation of LDs from normal an...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep19782

    authors: Li L,Zhang H,Wang W,Hong Y,Wang J,Zhang S,Xu S,Shu Q,Li J,Yang F,Zheng M,Qian Z,Liu P

    更新日期:2016-01-22 00:00:00

  • Clinicopathologic significance of MYD88 L265P mutation in diffuse large B-cell lymphoma: a meta-analysis.

    abstract::The precise clinicopathologic significance of myeloid differentiation primary response gene (MYD88) L265P mutation in diffuse large B-cell lymphomas (DLBCLs) remains elusive. To investigate the frequency and clinicopathologic significance of the MYD88 L265P mutation in DLBCLs, we conducted a meta-analysis of 40 publis...

    journal_title:Scientific reports

    pub_type: 杂志文章,meta分析

    doi:10.1038/s41598-017-01998-5

    authors: Lee JH,Jeong H,Choi JW,Oh H,Kim YS

    更新日期:2017-05-11 00:00:00

  • How DNA barcoding can be more effective in microalgae identification: a case of cryptic diversity revelation in Scenedesmus (Chlorophyceae).

    abstract::Microalgae identification is extremely difficult. The efficiency of DNA barcoding in microalgae identification involves ideal gene markers and approaches employed, which however, is still under the way. Although Scenedesmus has obtained much research in producing lipids its identification is difficult. Here we present...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep36822

    authors: Zou S,Fei C,Wang C,Gao Z,Bao Y,He M,Wang C

    更新日期:2016-11-09 00:00:00

  • Ultrafine particles and ozone perturb norepinephrine clearance rather than centrally generated sympathetic activity in humans.

    abstract::Cardiovascular risk rapidly increased following exposure to air pollution. Changes in human autonomic regulation have been implicated based on epidemiological associations between exposure estimates and indirect autonomic nervous system measurements. We conducted a mechanistic study to test the hypothesis that, in hea...

    journal_title:Scientific reports

    pub_type: 杂志文章,随机对照试验

    doi:10.1038/s41598-019-40343-w

    authors: Heusser K,Tank J,Holz O,May M,Brinkmann J,Engeli S,Diedrich A,Framke T,Koch A,Großhennig A,Jan Danser AH,Sweep FCGJ,Schindler C,Schwarz K,Krug N,Jordan J,Hohlfeld JM

    更新日期:2019-03-06 00:00:00

  • Exogenous GDF11, but not GDF8, reduces body weight and improves glucose homeostasis in mice.

    abstract::Insulin resistance is associated with aging in mice and humans. We have previously shown that administration of recombinant GDF11 (rGDF11) to aged mice alters aging phenotypes in the brain, skeletal muscle, and heart. While the closely related protein GDF8 has a role in metabolism, limited data are available on the po...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-61443-y

    authors: Walker RG,Barrandon O,Poggioli T,Dagdeviren S,Carroll SH,Mills MJ,Mendello KR,Gomez Y,Loffredo FS,Pancoast JR,Macias-Trevino C,Marts C,LeClair KB,Noh HL,Kim T,Banks AS,Kim JK,Cohen DE,Wagers AJ,Melton DA,Lee RT

    更新日期:2020-03-12 00:00:00

  • Inter- and intra-annual wind speed variabilities in wide valley regions of the middle reaches of the Yarlung Tsangpo River, China.

    abstract::Wind speed and variability are the most critical climatic factors affecting sand/dust storms, which have not been sufficiently studied in the middle reaches of the Yarlung Tsangpo River (MYR). In this study, wind speed variability was investigated using the moving average over shifting horizon method (MASH), combined ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-69392-2

    authors: Ben Y,Mei Y,Chen Y,Hu T,Zhu D

    更新日期:2020-07-29 00:00:00

  • Late p65 nuclear translocation in glioblastoma cells indicates non-canonical TLR4 signaling and activation of DNA repair genes.

    abstract::Glioblastoma (GBM) is the most aggressive brain primary malignancy. Toll-like receptor 4 (TLR4) has a dual role in cell fate, promoting cell survival or death depending on the context. Here, we analyzed TLR4 expression in different grades of astrocytoma, and observed increased expression in tumors, mainly in GBM, comp...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-79356-1

    authors: Moretti IF,Lerario AM,Trombetta-Lima M,Sola PR,da Silva Soares R,Oba-Shinjo SM,Marie SKN

    更新日期:2021-01-14 00:00:00

  • Philippines-Taiwan Oscillations and its connection to tropical cyclone frequency in the western North Pacific Ocean.

    abstract::An atmospheric component of the Philippine-Taiwan Oscillations (PTOa) is used to examine its potential connection with tropical cyclone (TC) frequency in the western North Pacific in the period of 1979-2014. During positive PTOa years, more TCs are observed in the tropical western Pacific south of 18 °N where cyclonic...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-35617-8

    authors: Chang YK,Miyazawa Y,Kodaira T,Behera S

    更新日期:2018-11-29 00:00:00

  • Directly Predicting Water Quality Criteria from Physicochemical Properties of Transition Metals.

    abstract::Transition metals are a group of elements widespread in aquatic environments that can be hazardous when concentrations exceeding threshold values. Due to insufficient data, criteria maximum concentrations (CMCs) of only seven transition metals for protecting aquatic life have been recommended by the USEPA. Hence, it i...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep22515

    authors: Wang Y,Wu F,Mu Y,Zeng EY,Meng W,Zhao X,Giesy JP,Feng C,Wang P,Liao H,Chen C

    更新日期:2016-03-03 00:00:00

  • Influence of low back pain and its remission on motor abundance in a low-load lifting task.

    abstract::Having an abundance of motor solutions during movement may be advantageous for the health of musculoskeletal tissues, given greater load distribution between tissues. The aim of the present study was to understand whether motor abundance differs between people with and without low back pain (LBP) during a low-load lif...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-74707-4

    authors: Liew BXW,De Nunzio AM,Srivastava S,Falla D

    更新日期:2020-10-20 00:00:00

  • Alterations of the volatile metabolome in mouse models of Alzheimer's disease.

    abstract::In the present study, we tested whether the volatile metabolome was altered by mutations of the Alzheimer's disease (AD)-implicated amyloid precursor protein gene (APP) and comprehensively examined urinary volatiles that may potentially serve as candidate biomarkers of AD. Establishing additional biomarkers in screeni...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep19495

    authors: Kimball BA,Wilson DA,Wesson DW

    更新日期:2016-01-14 00:00:00

  • Enhanced photocatalytic activity of Se-doped TiO2 under visible light irradiation.

    abstract::Anatase TiO2 is a typical photocatalyst, and its excellent performance is limited in ultraviolet light range due to its wide band gap of 3.2 eV. A series of Se-doped TiO2 nanoparticles in anatase structure with various Se concentrations up to 17.1 at.% were prepared using sol-gel method. The doped Se ions are confirme...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-27135-4

    authors: Xie W,Li R,Xu Q

    更新日期:2018-06-08 00:00:00

  • An update to the Monro-Kellie doctrine to reflect tissue compliance after severe ischemic and hemorrhagic stroke.

    abstract::High intracranial pressure (ICP) can impede cerebral blood flow resulting in secondary injury or death following severe stroke. Compensatory mechanisms include reduced cerebral blood and cerebrospinal fluid volumes, but these often fail to prevent raised ICP. Serendipitous observations in intracerebral hemorrhage (ICH...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-78880-4

    authors: Kalisvaart ACJ,Wilkinson CM,Gu S,Kung TFC,Yager J,Winship IR,van Landeghem FKH,Colbourne F

    更新日期:2020-12-16 00:00:00