Assembly of forest communities across East Asia--insights from phylogenetic community structure and species pool scaling.

Abstract:

:Local communities are assembled from larger-scale species pools via dispersal, environmental filtering, biotic interactions, and local stochastic demographic processes. The relative importance, scaling and interplay of these assembly processes can be elucidated by comparing local communities to variously circumscribed species pools. Here we present the first study applying this approach to forest tree communities across East Asia, focusing on community phylogenetic structure and using data from a global network of tropical, subtropical and temperate forest plots. We found that Net Relatedness Index (NRI) and Nearest Taxon Index (NTI) values were generally lower with geographically broad species pools (global and Asian species pools) than with an East Asian species pool, except that global species pool produced higher NTI than the East Asian species pool. The lower NRI for the global relative to the East Asian species pool may indicate an important role of intercontinental migration during the Neogene and Quaternary and climatic conservatism in shaping the deeper phylogenetic structure of tree communities in East Asia. In contrast, higher NTI for the global relative to the East Asian species pool is consistent with recent localized diversification determining the shallow phylogenetic structure.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Feng G,Mi X,Eiserhardt WL,Jin G,Sang W,Lu Z,Wang X,Li X,Li B,Sun I,Ma K,Svenning JC

doi

10.1038/srep09337

subject

Has Abstract

pub_date

2015-03-23 00:00:00

pages

9337

issn

2045-2322

pii

srep09337

journal_volume

5

pub_type

杂志文章
  • Entropic uncertainty relations for Markovian and non-Markovian processes under a structured bosonic reservoir.

    abstract::The uncertainty relation is a fundamental limit in quantum mechanics and is of great importance to quantum information processing as it relates to quantum precision measurement. Due to interactions with the surrounding environment, a quantum system will unavoidably suffer from decoherence. Here, we investigate the dyn...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-01094-8

    authors: Wang D,Huang AJ,Hoehn RD,Ming F,Sun WY,Shi JD,Ye L,Kais S

    更新日期:2017-04-21 00:00:00

  • TGF-β regulates Sca-1 expression and plasticity of pre-neoplastic mammary epithelial stem cells.

    abstract::The epithelial-mesenchymal plasticity, in tight association with stemness, contributes to the mammary gland homeostasis, evolution of early neoplastic lesions and cancer dissemination. Focused on cell surfaceome, we used mouse models of pre-neoplastic mammary epithelial and cancer stem cells to reveal the connection b...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-67827-4

    authors: Remšík J,Pícková M,Vacek O,Fedr R,Binó L,Hampl A,Souček K

    更新日期:2020-07-09 00:00:00

  • Effect of surface and porosity of biochar on water holding capacity aiming indirectly at preservation of the Amazon biome.

    abstract::As part of efforts to reduce pressure on the Amazon and other biomes, one approach considered by Brazilian authorities and scientists is more intensive use of the soils of the interior of the northeast of the country, which are generally sandy, with low contents of organic matter and low water holding capacity and are...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-28794-z

    authors: Batista EMCC,Shultz J,Matos TTS,Fornari MR,Ferreira TM,Szpoganicz B,de Freitas RA,Mangrich AS

    更新日期:2018-07-16 00:00:00

  • Differential Roles for Six P-Type Calcium ATPases in Sustaining Intracellular Ca2+ Homeostasis, Asexual Cycle and Environmental Fitness of Beauveria bassiana.

    abstract::A global insight into the roles of multiple P-type calcium ATPase (CA) pumps in sustaining the life of a filamentous fungal pathogen is lacking. Here we elucidated the functions of five CA pumps (Eca1, Spf1 and PmcA/B/C) following previous characterization of Pmr1 in Beauveria bassiana, a fungal insect pathogen. The f...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-01570-1

    authors: Wang J,Zhu XG,Ying SH,Feng MG

    更新日期:2017-05-03 00:00:00

  • Gene-activated matrix/bone marrow-derived mesenchymal stem cells constructs regenerate sweat glands-like structure in vivo.

    abstract::It is a significant challenge to regenerate full-thickness skin defects with sweat glands. Various skin substitutes have been developed to resolve this issue with minimal success. In this study, to yield a novel construct for in situ regeneration of sweat glands, the collagen-chitosan porous scaffold was combined with...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-17967-x

    authors: Kolakshyapati P,Li X,Chen C,Zhang M,Tan W,Ma L,Gao C

    更新日期:2017-12-15 00:00:00

  • Identification and local manipulation of bone marrow vasculature during intravital imaging.

    abstract::Physiological regulation of blood flow in bone marrow is important to maintain oxygen and glucose supplies but also the physiological hypoxic state of the hematopoietic stem cell (HSC) niche. However, regulatory mechanisms underlying microcirculation in the bone marrow (BM) niche remain unclear. Here, we identify vess...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-63533-3

    authors: Morikawa T,Tamaki S,Fujita S,Suematsu M,Takubo K

    更新日期:2020-04-14 00:00:00

  • Hkakabo Razi landscape as one of the last exemplar of large contiguous forests.

    abstract::Deforestation and forest degradation around the world endanger the functioning of ecosystems, climate stability, and conservation of biodiversity. We assessed the spatial and temporal dynamics of forest cover in Myanmar's Hkakabo Razi Landscape (HRL) to determine its integrity based on forest change and fragmentation ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-70917-y

    authors: Suarez-Rubio M,Connette G,Aung T,Kyaw M,Renner SC

    更新日期:2020-08-19 00:00:00

  • CRISPR-PCS: a powerful new approach to inducing multiple chromosome splitting in Saccharomyces cerevisiae.

    abstract::PCR-mediated chromosome splitting (PCS) was developed in the yeast Saccharomyces cerevisiae. It is based on homologous recombination and enables division of a chromosome at any point to form two derived and functional chromosomes. However, because of low homologous recombination activity, PCS is limited to a single si...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep30278

    authors: Sasano Y,Nagasawa K,Kaboli S,Sugiyama M,Harashima S

    更新日期:2016-08-17 00:00:00

  • Hearing impairment and the risk of neurodegenerative dementia: A longitudinal follow-up study using a national sample cohort.

    abstract::This study aimed to explore the risk of dementia in a middle- and older-aged population with severe or profound hearing impairments. Data were collected for the Korean National Health Insurance Service-National Sample Cohort from 2002 to 2013. Participants aged 40 or older were selected. The 4,432 severely hearing-imp...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-33325-x

    authors: Kim SY,Lim JS,Kong IG,Choi HG

    更新日期:2018-10-15 00:00:00

  • Lysophosphatidic acids and their substrate lysophospholipids in cerebrospinal fluid as objective biomarkers for evaluating the severity of lumbar spinal stenosis.

    abstract::Lysophospholipids (LPLs) are known to have potentially important roles in the initiation and maintenance of neuropathic pain in animal models. This study investigated the association between the clinical severity of lumbar spinal stenosis (LSS) and the cerebrospinal fluid (CSF) levels of LPLs, using human samples. We ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-45742-7

    authors: Hayakawa K,Kurano M,Ohya J,Oichi T,Kano K,Nishikawa M,Uranbileg B,Kuwajima K,Sumitani M,Tanaka S,Aoki J,Yatomi Y,Chikuda H

    更新日期:2019-06-24 00:00:00

  • Insights into grapevine defense response against drought as revealed by biochemical, physiological and RNA-Seq analysis.

    abstract::Grapevine is an important and extensively grown fruit crop, which is severely hampered by drought worldwide. So, comprehending the impact of drought on grapevine genetic resources is necessary. In the present study, RNA-sequencing was executed using cDNA libraries constructed from both drought-stress and control plant...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-13464-3

    authors: Haider MS,Zhang C,Kurjogi MM,Pervaiz T,Zheng T,Zhang C,Lide C,Shangguan L,Fang J

    更新日期:2017-10-13 00:00:00

  • Acoustic Complexity of vocal fish communities: a field and controlled validation.

    abstract::The Acoustic Complexity Index (ACI) is increasingly applied to the study of biodiversity in aquatic habitats. However, it remains unknown which types of acoustic information are highlighted by this index in underwater environments. This study explored the robustness of the ACI to fine variations in fish sound abundanc...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-28771-6

    authors: Bolgan M,Amorim MCP,Fonseca PJ,Di Iorio L,Parmentier E

    更新日期:2018-07-12 00:00:00

  • A Direct Comparison of Two Densely Sampled HIV Epidemics: The UK and Switzerland.

    abstract::Phylogenetic clustering approaches can elucidate HIV transmission dynamics. Comparisons across countries are essential for evaluating public health policies. Here, we used a standardised approach to compare the UK HIV Drug Resistance Database and the Swiss HIV Cohort Study while maintaining data-protection requirement...

    journal_title:Scientific reports

    pub_type: 杂志文章,多中心研究

    doi:10.1038/srep32251

    authors: Ragonnet-Cronin ML,Shilaih M,Günthard HF,Hodcroft EB,Böni J,Fearnhill E,Dunn D,Yerly S,Klimkait T,Aubert V,Yang WL,Brown AE,Lycett SJ,Kouyos R,Brown AJ

    更新日期:2016-09-19 00:00:00

  • IgE-binding residues analysis of the house dust mite allergen Der p 23.

    abstract::House dust mites (HDMs) are one of the major causes of allergies in the world. The group 23 allergen, Der p 23, from Dermatophagoides pteronyssinus, is a major allergen amongst HDM-sensitized individuals. This study aims to determine the specific immunoglobulin E (sIgE) binding frequency and IgE-binding residues of re...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-79820-y

    authors: Pang SL,Matta SA,Sio YY,Ng YT,Say YH,Ng CL,Chew FT

    更新日期:2021-01-13 00:00:00

  • Male Dispersal Pattern in Golden Snub-nosed Monkey (Rhinopithecus roxellana) in Qinling Mountains and its Conservation Implication.

    abstract::Golden snub-nosed monkey (Rhinopithecus roxellana) is one of the most endangered primate species found in China, exhibiting multilevel society consisting of several one-male-females together with their offspring units (OMU), and all-male units (AMU). Female dispersal patterns of the species within herd have been well ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep46217

    authors: Huang ZP,Bian K,Liu Y,Pan RL,Qi XG,Li BG

    更新日期:2017-05-11 00:00:00

  • Differential effects of an exotic plant virus on its two closely related vectors.

    abstract::Concurrent spread of Tomato yellow leaf curl virus (TYLCV) with invasion of Bemisia tabaci Q rather than B in China suggests a more mutualistic relationship between TYLCV and Q than B. To assess this hypothesis, we quantified the impacts of TYLCV on the performance and competitiveness of B and Q in the laboratory. The...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep02230

    authors: Pan H,Chu D,Liu B,Shi X,Guo L,Xie W,Carrière Y,Li X,Zhang Y

    更新日期:2013-01-01 00:00:00

  • Synthesis, properties and surface self-assembly of a pentanuclear cluster based on the new π-conjugated TTF-triazole ligand.

    abstract::The new π-extended redox-active ligand with both TTF and triazole units, 6-(4,5-bis(propylthio)-1,3-dithiol-2-ylidene)-1H-[1,3]dithiolo[4',5':4,5]benzo [1,2-d] [1-3]triazole, has been successfully prepared. Based on the versatile ligand and Cu(tta)2 precursors (tta(-) = 4,4,4-trifluoro-1-(thiophen-2-yl)butane-1,3-dion...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep25544

    authors: Cui L,Geng YF,Leong CF,Ma Q,D'Alessandro DM,Deng K,Zeng QD,Zuo JL

    更新日期:2016-05-06 00:00:00

  • Whole genome sequencing of a banana wild relative Musa itinerans provides insights into lineage-specific diversification of the Musa genus.

    abstract::Crop wild relatives are valuable resources for future genetic improvement. Here, we report the de novo genome assembly of Musa itinerans, a disease-resistant wild banana relative in subtropical China. The assembled genome size was 462.1 Mb, covering 75.2% of the genome (615.2Mb) and containing 32, 456 predicted protei...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep31586

    authors: Wu W,Yang YL,He WM,Rouard M,Li WM,Xu M,Roux N,Ge XJ

    更新日期:2016-08-17 00:00:00

  • Photoacoustic image patterns of breast carcinoma and comparisons with Magnetic Resonance Imaging and vascular stained histopathology.

    abstract::Photoacoustic (optoacoustic) imaging can visualize vasculature deep in tissue using the high contrast of hemoglobin to light, with the high-resolution possible with ultrasound detection. Since angiogenesis, one of the hallmarks of cancer, leads to increased vascularity, photoacoustics holds promise in imaging breast c...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep11778

    authors: Heijblom M,Piras D,Brinkhuis M,van Hespen JC,van den Engh FM,van der Schaaf M,Klaase JM,van Leeuwen TG,Steenbergen W,Manohar S

    更新日期:2015-07-10 00:00:00

  • Co-immunization with DNA and protein mixture: a safe and efficacious immunotherapeutic strategy for Alzheimer's disease in PDAPP mice.

    abstract::Active immunotherapy targeting β-amyloid (Aβ) is the most promising strategy to prevent or treat Alzheimer's disease (AD). Based on pre-clinical studies and clinical trials, a safe and effective AD vaccine requires a delicate balance between providing therapeutically adequate anti-Aβ antibodies and eliminating or supp...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep07771

    authors: Liu S,Shi D,Wang HC,Yu YZ,Xu Q,Sun ZW

    更新日期:2015-01-14 00:00:00

  • Active structural acoustic illusions.

    abstract::We present active manipulation of the structural vibrations of an elastic body to generate an acoustic illusion. The resultant illusion misrepresents the nature, size and number of objects in the exterior acoustic domain. We demonstrate our technique, herein termed active structural acoustic illusion, using an elastic...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-66398-8

    authors: Eggler D,Kessissoglou N

    更新日期:2020-06-17 00:00:00

  • High-speed and Large-scale Privacy Amplification Scheme for Quantum Key Distribution.

    abstract::State-of-art quantum key distribution (QKD) systems are performed with several GHz pulse rates, meanwhile privacy amplification (PA) with large scale inputs has to be performed to generate the final secure keys with quantified security. In this paper, we propose a fast Fourier transform (FFT) enhanced high-speed and l...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-50290-1

    authors: Tang BY,Liu B,Zhai YP,Wu CQ,Yu WR

    更新日期:2019-10-31 00:00:00

  • Detection of timescales in evolving complex systems.

    abstract::Most complex systems are intrinsically dynamic in nature. The evolution of a dynamic complex system is typically represented as a sequence of snapshots, where each snapshot describes the configuration of the system at a particular instant of time. This is often done by using constant intervals but a better approach wo...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep39713

    authors: Darst RK,Granell C,Arenas A,Gómez S,Saramäki J,Fortunato S

    更新日期:2016-12-22 00:00:00

  • Booster immunizations with DNA plasmids encoding HER-2/neu prevent spontaneous mammary cancer in HER-2/neu transgenic mice over life span.

    abstract::Cancer vaccines are less effective at old than at young age because of immunosenescence. Besides, in preliminary observations we showed that the immunization with HER-2/neu DNA plasmid in transgenic young mice (standard immunization, SI) delays but not abrogate spontaneous mammary tumours progressively appearing durin...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-03286-8

    authors: Provinciali M,Barucca A,Orlando F,Pierpaoli E

    更新日期:2017-06-08 00:00:00

  • A Systematic Study of the Impact of Estrogens and Selective Estrogen Receptor Modulators on Prostate Cancer Cell Proliferation.

    abstract::The estrogen signaling pathway has been reported to modulate prostate cancer (PCa) progression through the activity of estrogen receptors α and β (ERα and ERβ). Given that selective estrogen receptor modulators (SERMs) are used to treat breast cancer, ERs have been proposed as attractive therapeutic targets in PCa. Ho...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-60844-3

    authors: Lafront C,Germain L,Weidmann C,Audet-Walsh É

    更新日期:2020-03-04 00:00:00

  • Statistical Evolutionary Laws in Music Styles.

    abstract::If a cultural feature is transmitted over generations and exposed to stochastic selection when spreading in a population, its evolution may be governed by statistical laws and be partly predictable, as in the case of genetic evolution. Music exhibits steady changes of styles over time, with new characteristics develop...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-52380-6

    authors: Nakamura E,Kaneko K

    更新日期:2019-11-05 00:00:00

  • Roles of cellular heterogeneity, intrinsic and extrinsic noise in variability of p53 oscillation.

    abstract::The p53 protein is a key mediator of the cellular response to various stress signals. In response to DNA damage, the concentration of p53 can temporally oscillate with fluctuations in both the amplitude and period. The underlying mechanism for p53 variability is not fully understood. Here, we construct a core regulato...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-41904-9

    authors: Wang DG,Wang S,Huang B,Liu F

    更新日期:2019-04-10 00:00:00

  • Crystal structure of E. coli endonuclease V, an essential enzyme for deamination repair.

    abstract::Endonuclease V (EndoV) is a ubiquitous protein present in all three kingdoms of life, responsible for the specific cleavages at the second phosphodiester bond 3' to inosine. E. coli EndoV (EcEndoV) is the first member discovered in the EndoV family. It is a small protein with a compact gene organization, yet with a wi...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep12754

    authors: Zhang Z,Jia Q,Zhou C,Xie W

    更新日期:2015-08-05 00:00:00

  • The adeno-associated virus rh10 vector is an effective gene transfer system for chronic spinal cord injury.

    abstract::Treatment options for chronic spinal cord injury (SCI) remain limited due to unfavourable changes in the microenvironment. Gene therapy can overcome these barriers through continuous delivery of therapeutic gene products to the target tissue. In particular, adeno-associated virus (AAV) vectors are potential candidates...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-46069-z

    authors: Hoshino Y,Nishide K,Nagoshi N,Shibata S,Moritoki N,Kojima K,Tsuji O,Matsumoto M,Kohyama J,Nakamura M,Okano H

    更新日期:2019-07-08 00:00:00

  • Improvement of Terahertz Wave Radiation for InAs Nanowires by Simple Dipping into Tap Water.

    abstract::We report improvement of terahertz (THz) wave radiation for Si-based catalyst-free InAs nanowires (NWs) by simple dipping into tap water (DTW). In addition, the possibility of using InAs NWs as a cost-effective method for biomedical applications is discussed by comparison to bulk InAs. The peak-to-peak current signals...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep36094

    authors: Park DW,Bin Ji Y,Hwang J,Lee CR,Lee SJ,Kim JO,Noh SK,Oh SJ,Kim SH,Jeon TI,Jeong KU,Kim JS

    更新日期:2016-10-26 00:00:00