Pseudomonas glareae sp. nov., a marine sediment-derived bacterium with antagonistic activity.

Abstract:

:An aerobic, Gram-negative, motile, rod-shaped bacterium designated KMM 9500(T) was isolated from a sediment sample collected from the Sea of Japan seashore. Comparative 16S rRNA gene sequence analysis affiliated strain KMM 9500(T) to the genus Pseudomonas as a distinct subline clustered with Pseudomonas marincola KMM 3042(T) and Pseudomonas segetis KCTC 12331(T) sharing the highest similarities of 98 and 97.9 %, respectively. Strain KMM 9500(T) was characterized by mainly possessing ubiquinone Q-9, and by the predominance of C18:1 ω7c, C16:1 ω7c, and C16:0 followed by C12:0 in its fatty acid profile. Polar lipids consisted of phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, an unknown aminophospholipid, and unknown phospholipids. Strain KMM 9500(T) was found to inhibit growth of Gram-negative and Gram-positive indicatory microorganisms. Based on the phylogenetic analysis and distinctive phenotypic characteristics, strain 9500(T) is concluded to represent a novel species of the genus Pseudomonas, for which the name Pseudomonas glareae sp. nov. is proposed. The type strain of the species is strain KMM 9500(T) (=NRIC 0939(T)).

journal_name

Arch Microbiol

journal_title

Archives of microbiology

authors

Romanenko LA,Tanaka N,Svetashev VI,Mikhailov VV

doi

10.1007/s00203-015-1103-6

subject

Has Abstract

pub_date

2015-06-01 00:00:00

pages

693-9

issue

5

eissn

0302-8933

issn

1432-072X

journal_volume

197

pub_type

杂志文章
  • Studies on the biosynthesis of coenzyme F420 in methanogenic bacteria.

    abstract::Coenzyme F420 is a 8-hydroxy-5-deazaflavin present in methanogenic bacteria. We have investigated whether the pyrimidine ring of the deazaflavin originates from guanine as in flavin biosynthesis, in which the pyrimidine ring of guanine is conserved. For this purpose the incorporation of [2-14C]guanine and of [8-14C]gu...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/BF00410735

    authors: Jaenchen R,Schönheit P,Thauer RK

    更新日期:1984-04-01 00:00:00

  • Assessment of the bioprotective potential of lactic acid bacteria against Listeria monocytogenes in ground beef.

    abstract::Lactic acid bacteria can be considered as natural biopreservative and good biotechnological alternative to food safety. In this study, the antilisterial compounds produced by Enterococcus isolates from the Patagonian environment and their effectiveness for the control of Listeria monocytogenes in a food model were stu...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/s00203-020-02118-0

    authors: Gomez JS,Parada RB,Vallejo M,Marguet ER,Bellomio A,Perotti N,de Carvalho KG

    更新日期:2021-01-02 00:00:00

  • Transcription in the prpC-yloQ region in Bacillus subtilis.

    abstract::The prpC and prkC genes encode two proteins with opposing activities, eukaryotic-like protein phosphatase and protein kinase involved in the sporulation and biofilm formation processes. The prpC gene overlaps 3 bp of the prkC gene; prkC is followed by the essential gene, yloQ. The organisation of the prpC, prkC and yl...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/s00203-005-0015-2

    authors: Iwanicki A,Hinc K,Seror S,Wegrzyn G,Obuchowski M

    更新日期:2005-09-01 00:00:00

  • Evaluation of mtr cluster expression in Shewanella RCRI7 during uranium removal.

    abstract::In recent years, bioremediation is considered as an efficient method to remove the pollutants from the industrial wastewater. In this study, quantitative gene expressions (Real-time RT-PCR) of mtr gene cluster (mtrA, mtrB, mtrC, mtrD, mtrE, mtrF and omcA) in five different uranium concentrations (0.1, 0.25, 0.5, 1 and...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/s00203-020-01981-1

    authors: Ghasemi R,Fatemi F,Mir-Derikvand M,Zarei M

    更新日期:2020-12-01 00:00:00

  • Cibacron blue 3G-A inhibits cell separation of gram-positive bacteria.

    abstract::A triazine dye, Cibacron blue 3G-A (CB), is an inhibitor of cell separation of staphylococcal spp. therefore, we examined the effect of CB on growth of gram-positive bacteria other than Staphylococcus. CB added to the medium of growing cultures of strains of genus Micrococcus, Streptococcus, Lactobacillus and Bacillus...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/BF00248617

    authors: Sugai M,Akiyama T,Komatsuzawa H,Miyake Y,Suginaka H

    更新日期:1991-01-01 00:00:00

  • Genetic and biochemical analyses of chlorobenzene degradation gene clusters in Pandoraea sp. strain MCB032.

    abstract::Pandoraea sp. strain MCB032 was isolated as an emerging chlorobenzene degrader from a functionally stable bioreactor where species succession had occurred. In this study, two gene clusters encoding chlorobenzene metabolic functions have been cloned. Within the cbs gene cluster, CbsA and CbsB are similar to the chlorob...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/s00203-009-0476-9

    authors: Jiang XW,Liu H,Xu Y,Wang SJ,Leak DJ,Zhou NY

    更新日期:2009-06-01 00:00:00

  • Role of glycosidases in the membranlytic, antifungal action of Saponins.

    abstract::In studies on the membranlytic action of various saponins on mycelium of Botrytis cinerea and Rhizoctonia solani digitonin, alpha-hederin and tomatin caused considerable leakage of free amino acids, while aescin and theasaponin were less effective. Cyclamin significantly damaged cell membranes of R. solani, but did no...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/BF00447315

    authors: Segal R,Schlösser E

    更新日期:1975-06-22 00:00:00

  • Flow cytometric screening and isolation of Escherichia coli clones which express surface antigens of the oil-degrading microorganism Acinetobacter calcoaceticus RAG-1.

    abstract::Flow cytometry (FCM) in conjunction with immunocytochemical-labeling was used to analyze and screen a population of Escherichia coli clones containing a genomic library from the oil-degrading microorganism Acinetobacter calcoaceticus RAG-1 surface antigens. Reconstruction experiments using mixed populations indicated ...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/BF00422282

    authors: Minas W,Sahar E,Gutnick D

    更新日期:1988-01-01 00:00:00

  • Degradation and turnover of peroxisomes in the yeast Hansenula polymorpha induced by selective inactivation of peroxisomal enzymes.

    abstract::Inactivation of peroxisomal enzymes in the yeast Hansenula polymorpha was studied following transfer of cells into cultivation media in which their activity was no longer required for growth. After transfer of methanol-grown cells into media containing glucose - a substrate that fully represses alcohol oxidase synthes...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/BF00407757

    authors: Veenhuis M,Douma A,Harder W,Osumi M

    更新日期:1983-06-01 00:00:00

  • Structure, function and biosynthesis of carotenoids in the moderately halophilic bacterium Halobacillus halophilus.

    abstract::Inhibitor studies and mutant analysis revealed a C(30) pathway via 4,4'-diapophytoene and 4,4'-diaponeurosporene to 4,4'-diaponeursoporene-4-oic acid esters related to staphyloxanthin in Halobacillus halophilus. Six genes may be involved in this biosynthetic pathway and could be found in two adjacent gene clusters. Tw...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/s00203-008-0431-1

    authors: Köcher S,Breitenbach J,Müller V,Sandmann G

    更新日期:2009-02-01 00:00:00

  • Distribution and sub-cellular localization of the aflatoxin enzyme versicolorin B synthase in time-fractionated colonies of Aspergillus parasiticus.

    abstract::Aflatoxins are highly toxic and carcinogenic fungal secondary metabolites. At least 18 enzyme activities are required for aflatoxin biosynthesis in the filamentous fungus Aspergillus parasiticus. One of these enzymes, versicolorin B synthase (VBS), catalyzes bisfuran ring closure in versiconal hemiacetal (a reaction n...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/s00203-004-0700-6

    authors: Chiou CH,Lee LW,Owens SA,Whallon JH,Klomparens KL,Townsend CA,Linz JE

    更新日期:2004-09-01 00:00:00

  • The fine structure of Micrococcus radiophilus and Micrococcus radioproteolyticus.

    abstract::The radiation resistant bacteria Micrococcus radiophilus and M. radioproteolyticus were studied by thin sectioning and freez-etching techniques and the two species were found to be similar in the fine structure. The only significant difference was in the appearance of the surfaces of the cell walls in freeze-etched pr...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/BF00425346

    authors: Sleytr UB,Silva MT,Kocur M,Lewis NF

    更新日期:1976-04-01 00:00:00

  • Metabolism of 2-aminophenol by Pseudomonas sp. AP-3: modified meta-cleavage pathway.

    abstract::A novel pathway for 2-aminophenol metabolism by Pseudomonas sp. AP-3 is proposed. The proposed pathway is similar to that known for meta-cleavage of catechol except that one of the hydroxyl groups on the metabolites is replaced by an amino group. During the degradation of 2-aminophenol, 2-amino-2,4-pentadienoic acid i...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/s002030050624

    authors: Takenaka S,Murakami S,Shinke R,Aoki K

    更新日期:1998-08-01 00:00:00

  • Identification of N-acyl homoserine lactones produced by Gluconacetobacter diazotrophicus PAL5 cultured in complex and synthetic media.

    abstract::The endophytic diazotrophic Gluconacetobacter diazotrophicus PAL5 was originally isolated from sugarcane (Saccharum officinarum). The biological nitrogen fixation, phytohormones secretion, solubilization of mineral nutrients and phytopathogen antagonism allow its classification as a plant growth-promoting bacterium. T...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/s00203-012-0794-1

    authors: Nieto-Peñalver CG,Bertini EV,de Figueroa LI

    更新日期:2012-07-01 00:00:00

  • Fatty acid, polar lipid and wall amino acid composition of Gardnerella vaginalis.

    abstract::Representative strains of Gardnerella vaginalis were degraded using both an alkaline and an acid methanolysis and the fatty acid methyl esters released examined by thin-layer and gas chromatography. The profiles obtained were both qualitatively and quantitatively similar and were comprised of straight chain saturated ...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/BF00425410

    authors: O'Donnell AG,Minnikin DE,Goodfellow M,Piot P

    更新日期:1984-05-01 00:00:00

  • The role of the cellulolytic high molecular mass (HMM) complex of the anaerobic fungus Piromyces sp. strain E2 in the hydrolysis of microcrystalline cellulose.

    abstract::The anaerobic fungus Piromyces sp. strain E2 produces extracellular cellulolytic enzymes present both in a high molecular mass (HMM) complex or as individual proteins. Although the HMM complex was present in the culture fluid during all growth stages, the highest amounts of complex were obtained when cultures were har...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:

    authors: Dijkerman R,Op den Camp HJ,Van der Drift C,Vogels GD

    更新日期:1997-02-01 00:00:00

  • Isolation and characterization of a unique protease from sporulating cells of Bacillus subtilis.

    abstract::Two proteases, designated I and II, have been isolated from sporulating cells of Bacillus subtilis. They were partially purified by ammonium sulfate fractionation, Sephadex chromatography and affinity columns. Protease I was found to be similar to an already characterized B. subtilis protease. Protease II is trypsin-l...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/BF00425256

    authors: Srivastava OP,Aronson AI

    更新日期:1981-05-01 00:00:00

  • Characterization of Bacillus subtilis YfkE (ChaA): a calcium-specific Ca2+/H+ antiporter of the CaCA family.

    abstract::YfkE, a protein from Bacillus subtilis, exhibits homology to the Ca(2+):Cation Antiporter (CaCA) Family. In a fluorescence-based assay of everted membrane vesicles prepared from Na(+)(Ca(2+))/H(+) antiporter-defective mutant Escherichia coli KNabc, YfkE exhibited robust Ca(2+)/H(+) antiport activity, with a K (m) for ...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/s00203-009-0494-7

    authors: Fujisawa M,Wada Y,Tsuchiya T,Ito M

    更新日期:2009-08-01 00:00:00

  • Cloning and characterization of two novel DNases from Streptococcus pyogenes.

    abstract::The proteins in the culture supernatant (exoproteins) from Streptococcus pyogenes serotype M1 were separated by two-dimensional gel electrophoresis, and their N-terminal amino acid sequences were determined. The amino acid sequences were compared to sequences in the S. pyogenes genome database. The coding sequence sho...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/s00203-002-0412-8

    authors: Hasegawa T,Torii K,Hashikawa S,Iinuma Y,Ohta M

    更新日期:2002-06-01 00:00:00

  • Widespread predatory abilities in the genus Streptomyces.

    abstract::The natural role of antibiotics in the ecology of Streptomyces is debated and still largely unknown. The predatory myxobacteria and many other genera of prokaryotic epibiotic and wolfpack predators across different taxa possess secondary metabolites with antimicrobial action, and these compounds have a role in predati...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/s00203-014-0961-7

    authors: Kumbhar C,Mudliar P,Bhatia L,Kshirsagar A,Watve M

    更新日期:2014-04-01 00:00:00

  • Wavelength dependence of biological damage induced by UV radiation on bacteria.

    abstract::The biological effects of UV radiation of different wavelengths (UVA, UVB and UVC) were assessed in nine bacterial isolates displaying different UV sensitivities. Biological effects (survival and activity) and molecular markers of oxidative stress [DNA strand breakage (DSB), generation of reactive oxygen species (ROS)...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/s00203-012-0847-5

    authors: Santos AL,Oliveira V,Baptista I,Henriques I,Gomes NC,Almeida A,Correia A,Cunha Â

    更新日期:2013-01-01 00:00:00

  • Oxidation of formaldehyde by alcohol oxidase of Candida boidinii.

    abstract::A fromaldehyde oxidase activity was found in cellfree extracts of methanol-grown yeast Candida boidinii. Loss of alcohol oxidase activity in a mutant, 48, led to loss of the formaldehyde oxidase activity, indicating that the same enzyme is probably responsible for both activities. This could be demonstrated with the p...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/BF00447134

    authors: Sahm H

    更新日期:1975-10-27 00:00:00

  • Cytoplasmic contractions in growing fungal hyphae and their morphogenetic consequences.

    abstract::Video-enhanced light microscopy of the apical and subapical regions of growing hyphae of several fungal species revealed the existence of momentary synchronized motions of subcellular organelles. First discovered in a temperature-sensitive morphological mutant (ramosa-1) of Aspergillus niger, these seemingly spontaneo...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/s00203-005-0771-z

    authors: Reynaga-Peña CG,Bartnicki-García S

    更新日期:2005-05-01 00:00:00

  • Bacillus amyloliquefaciens strains isolated from moisture-damaged buildings produced surfactin and a substance toxic to mammalian cells.

    abstract::Fungicidic Bacillus amyloliquefaciens strains isolated from the indoor environment of moisture-damaged buildings contained heat-stable, methanol-soluble substances that inhibited motility of boar spermatozoa within 15 min of exposure and killed feline lung cells in high dilution in 1 day. Boar sperm cells lost motilit...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/s00203-004-0660-x

    authors: Mikkola R,Andersson MA,Grigoriev P,Teplova VV,Saris NE,Rainey FA,Salkinoja-Salonen MS

    更新日期:2004-04-01 00:00:00

  • Synergistic iron reduction and citrate dissimilation by Shewanella alga and Aeromonas veronii

    abstract::Two bacterial isolates from Great Bay Estuary, New Hampshire, in co-culture carried out anaerobic dissimilation of citric acid with Fe(III) as the terminal electron acceptor. Neither isolate oxidized citrate with Fe(III) anaerobically in axenic culture. The Fe(III) reducer, Shewanella alga strain BrY, did not grow ana...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/s002030050383

    authors: Knight V V,Caccavo F,Wudyka S,Blakemore R

    更新日期:1996-10-17 00:00:00

  • Macromolecular synthesis and cell division during morphogenesis of Arthrobacter crystallopoietes.

    abstract::The sphere-rod-sphere morphology cycle of Arthrobacter crystallopoietes was accompanied by changes in the rate of growth and the rates of DNA, RNA and protein synthesis. The patterns of macromolecule synthesis resembled those found in other bacteria during a step-up followed by a step-down in growth rate. During the s...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/BF00446549

    authors: St John AC,Ensign JC

    更新日期:1976-12-01 00:00:00

  • Intracellular localization of the particulate methane monooxygenase and methanol dehydrogenase in Methylomicrobium album BG8.

    abstract::The methanotrophic bacterium Methylomicrobium album BG8 uses methane as a sole source of carbon and energy. This bacterium forms an extensive intracytoplasmic membrane. The first enzymes of the methane oxidation pathway are the membrane-bound particulate methane monooxygenase and the periplasmic methanol dehydrogenase...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/s00203-002-0426-2

    authors: Brantner CA,Remsen CC,Owen HA,Buchholz LA,Perille Collins ML

    更新日期:2002-07-01 00:00:00

  • Glycollate production and excretion by Alcaligenes eutrophus.

    abstract::Autotrophic cultures of the facultative chemolithotroph Alcaligenes eutrophus have been found to excrete glycollate. This excretion was greatly stimulated by the incorporation of up to 20% (v/v) oxygen in the hydrogen used for gassing. The stimulatory effect of oxygen was prevented by the addition of 10% (v/v) CO2 to ...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/BF00690224

    authors: Codd GA,Bowien B,Schlegel HG

    更新日期:1976-11-02 00:00:00

  • Thermococcus alcaliphilus sp. nov., a new hyperthermophilic archaeum growing on polysulfide at alkaline pH.

    abstract::A novel coccoid-shaped, hyperthermophilic, heterotrophic member of the archaea was isolated from a shallow marine hydrothermal system at Vulcano Island, Italy. The isolate grew between 56 and 90 degrees C with an optimum around 85 degrees C. The pH range for growth was 6.5 to 10.5, with an optimum around 9.0. Polysulf...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:

    authors: Keller M,Braun FJ,Dirmeier R,Hafenbradl D,Burggraf S,Rachel R,Stetter KO

    更新日期:1995-12-01 00:00:00

  • Genetic diversity of Microcystis cyanophages in two different freshwater environments.

    abstract::Bacteriophages rapidly diversify their genes through co-evolution with their hosts. We hypothesize that gene diversification of phages leads to locality in phages genome. To test this hypothesis, we investigated the genetic diversity and composition of Microcystis cyanophages using 104 sequences of Ma-LMM01-type cyano...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/s00203-014-0980-4

    authors: Nakamura G,Kimura S,Sako Y,Yoshida T

    更新日期:2014-06-01 00:00:00