Novel codon-optimized mini-intronic plasmid for efficient, inexpensive, and xeno-free induction of pluripotency.

Abstract:

:The development of human induced pluripotent stem cell (iPSC) technology has revolutionized the regenerative medicine field. This technology provides a powerful tool for disease modeling and drug screening approaches. To circumvent the risk of random integration into the host genome caused by retroviruses, non-integrating reprogramming methods have been developed. However, these techniques are relatively inefficient or expensive. The mini-intronic plasmid (MIP) is an alternative, robust transgene expression vector for reprogramming. Here we developed a single plasmid reprogramming system which carries codon-optimized (Co) sequences of the canonical reprogramming factors (Oct4, Klf4, Sox2, and c-Myc) and short hairpin RNA against p53 ("4-in-1 CoMiP"). We have derived human and mouse iPSC lines from fibroblasts by performing a single transfection. Either independently or together with an additional vector encoding for LIN28, NANOG, and GFP, we were also able to reprogram blood-derived peripheral blood mononuclear cells (PBMCs) into iPSCs. Taken together, the CoMiP system offers a new highly efficient, integration-free, easy to use, and inexpensive methodology for reprogramming. Furthermore, the CoMIP construct is color-labeled, free of any antibiotic selection cassettes, and independent of the requirement for expression of the Epstein-Barr Virus nuclear antigen (EBNA), making it particularly beneficial for future applications in regenerative medicine.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Diecke S,Lu J,Lee J,Termglinchan V,Kooreman NG,Burridge PW,Ebert AD,Churko JM,Sharma A,Kay MA,Wu JC

doi

10.1038/srep08081

subject

Has Abstract

pub_date

2015-01-28 00:00:00

pages

8081

issn

2045-2322

pii

srep08081

journal_volume

5

pub_type

杂志文章
  • Significance of penile hypersensitivity in premature ejaculation.

    abstract::To assess the correlation between penile hypersensitivity and premature ejaculation (PE), a total of 420 consecutive subjects attending our andrologic clinic for suspected PE were enrolled. The entire cohort was asked to complete the self-report intravaginal ejaculation latency time (IELT) by stopwatch. According to t...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-09155-8

    authors: Guo L,Liu Y,Wang X,Yuan M,Yu Y,Zhang X,Zhao S

    更新日期:2017-09-05 00:00:00

  • Pharmacological targeting of the β-amyloid precursor protein intracellular domain.

    abstract::Amyloid precursor protein (APP) intracellular domain (AICD) is a product of APP processing with transcriptional modulation activity, whose overexpression causes various Alzheimer's disease (AD)-related dysfunctions. Here we report that 1-(3',4'-dichloro-2-fluoro[1,1'-biphenyl]-4-yl)-cyclopropanecarboxylic acid) (CHF50...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep04618

    authors: Branca C,Sarnico I,Ruotolo R,Lanzillotta A,Viscomi AR,Benarese M,Porrini V,Lorenzini L,Calzà L,Imbimbo BP,Ottonello S,Pizzi M

    更新日期:2014-04-09 00:00:00

  • Accumulation and transformation of inorganic and organic arsenic in rice and role of thiol-complexation to restrict their translocation to shoot.

    abstract::Environmental contamination of arsenic (As) and its accumulation in rice (Oryza sativa L.) is of serious human health concern. In planta speciation of As is an important tool to understand As metabolism in plants. In the present study, we investigated root to shoot As translocation and speciation in rice exposed to in...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep40522

    authors: Mishra S,Mattusch J,Wennrich R

    更新日期:2017-01-17 00:00:00

  • An active IGF-1R-AKT signaling imparts functional heterogeneity in ovarian CSC population.

    abstract::Deregulated IGF-1R-AKT signaling influences multiple nodes of cancer cell physiology and assists in migration, metastasis and acquirement of radio/chemoresistance. Enrichment of cancer stem cells (CSC) positively correlates with radio/chemoresistance development in various malignancies. It is unclear though, how IGF-1...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep36612

    authors: Singh RK,Dhadve A,Sakpal A,De A,Ray P

    更新日期:2016-11-07 00:00:00

  • RSH enzyme diversity for (p)ppGpp metabolism in Phaeodactylum tricornutum and other diatoms.

    abstract::The nucleotides guanosine tetraphosphate and pentaphosphate (together known as (p)ppGpp or magic spot) are produced in plant plastids from GDP/GTP and ATP by RelA-SpoT homologue (RSH) enzymes. In the model plant Arabidopsis (p)ppGpp regulates chloroplast transcription and translation to affect growth, and is also impl...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-54207-w

    authors: Avilan L,Puppo C,Villain A,Bouveret E,Menand B,Field B,Gontero B

    更新日期:2019-11-27 00:00:00

  • A Multinational Analysis of Mutations and Heterogeneity in PZase, RpsA, and PanD Associated with Pyrazinamide Resistance in M/XDR Mycobacterium tuberculosis.

    abstract::Pyrazinamide (PZA) is an important first-line drug in all existing and new tuberculosis (TB) treatment regimens. PZA-resistance in M. tuberculosis is increasing, especially among M/XDR cases. Noted issues with PZA Drug Susceptibility Testing (DST) have driven the search for alternative tests. This study provides a com...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-03452-y

    authors: Ramirez-Busby SM,Rodwell TC,Fink L,Catanzaro D,Jackson RL,Pettigrove M,Catanzaro A,Valafar F

    更新日期:2017-06-19 00:00:00

  • Long-term sediment decline causes ongoing shrinkage of the Mekong megadelta, Vietnam.

    abstract::Since the 1990s the Mekong River delta has suffered a large decline in sediment supply causing coastal erosion, following catchment disturbance through hydropower dam construction and sand extraction. However, our new geological reconstruction of 2500-years of delta shoreline changes show that serious coastal erosion ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-64630-z

    authors: Tamura T,Nguyen VL,Ta TKO,Bateman MD,Gugliotta M,Anthony EJ,Nakashima R,Saito Y

    更新日期:2020-05-15 00:00:00

  • Characterization of the Escherichia coli σ(S) core regulon by Chromatin Immunoprecipitation-sequencing (ChIP-seq) analysis.

    abstract::In bacteria, selective promoter recognition by RNA polymerase is achieved by its association with σ factors, accessory subunits able to direct RNA polymerase "core enzyme" (E) to different promoter sequences. Using Chromatin Immunoprecipitation-sequencing (ChIP-seq), we searched for promoters bound by the σ(S)-associa...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep10469

    authors: Peano C,Wolf J,Demol J,Rossi E,Petiti L,De Bellis G,Geiselmann J,Egli T,Lacour S,Landini P

    更新日期:2015-05-28 00:00:00

  • Development of a multi-locus CRISPR gene drive system in budding yeast.

    abstract::The discovery of CRISPR/Cas gene editing has allowed for major advances in many biomedical disciplines and basic research. One arrangement of this biotechnology, a nuclease-based gene drive, can rapidly deliver a genetic element through a given population and studies in fungi and metazoans have demonstrated the succes...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-34909-3

    authors: Yan Y,Finnigan GC

    更新日期:2018-11-22 00:00:00

  • Potential of in vivo real-time gastric gas profiling: a pilot evaluation of heat-stress and modulating dietary cinnamon effect in an animal model.

    abstract::Gastroenterologists are still unable to differentiate between some of the most ordinary disorders of the gut and consequently patients are misdiagnosed. We have developed a swallowable gas sensor capsule for addressing this. The gases of the gut are the by-product of the fermentation processes during digestion, affect...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep33387

    authors: Ou JZ,Cottrell JJ,Ha N,Pillai N,Yao CK,Berean KJ,Ward SA,Grando D,Muir JG,Harrison CJ,Wijesiriwardana U,Dunshea FR,Gibson PR,Kalantar-Zadeh K

    更新日期:2016-09-16 00:00:00

  • Genetic polymorphism analyses of 30 InDels in Chinese Xibe ethnic group and its population genetic differentiations with other groups.

    abstract::In the present study, we obtained population genetic data and forensic parameters of 30 InDel loci in Chinese Xibe ethnic group from northwestern China and studied the genetic relationships between the studied Xibe group and other reference groups. The observed heterozygosities ranged from 0.1704 at HLD118 locus to 0....

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep08260

    authors: Meng HT,Zhang YD,Shen CM,Yuan GL,Yang CH,Jin R,Yan JW,Wang HD,Liu WJ,Jing H,Zhu BF

    更新日期:2015-02-05 00:00:00

  • Speech-specific categorical perception deficit in autism: An Event-Related Potential study of lexical tone processing in Mandarin-speaking children.

    abstract::Recent studies reveal that tonal language speakers with autism have enhanced neural sensitivity to pitch changes in nonspeech stimuli but not to lexical tone contrasts in their native language. The present ERP study investigated whether the distinct pitch processing pattern for speech and nonspeech stimuli in autism w...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep43254

    authors: Wang X,Wang S,Fan Y,Huang D,Zhang Y

    更新日期:2017-02-22 00:00:00

  • Viral nervous necrosis in gilthead sea bream (Sparus aurata) caused by reassortant betanodavirus RGNNV/SJNNV: an emerging threat for Mediterranean aquaculture.

    abstract::Viral nervous necrosis (VNN) certainly represents the biggest challenge for the sustainability and the development of aquaculture. A large number of economically relevant fish species have proven to be susceptible to the disease. Conversely, gilthead sea bream has generally been considered resistant to VNN, although i...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep46755

    authors: Toffan A,Pascoli F,Pretto T,Panzarin V,Abbadi M,Buratin A,Quartesan R,Gijón D,Padrós F

    更新日期:2017-05-02 00:00:00

  • Adaptive evolution of a hyperthermophilic archaeon pinpoints a formate transporter as a critical factor for the growth enhancement on formate.

    abstract::Previously, we reported that the hyperthermophilic archaeon Thermococcus onnurineus NA1 could grow on formate and produce H2. Formate conversion to hydrogen was mediated by a formate-hydrogen lyase complex and was indeed a part of chemiosmotic coupling to ATP generation. In this study, we employed an adaptation approa...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-05424-8

    authors: Jung HC,Lee SH,Lee SM,An YJ,Lee JH,Lee HS,Kang SG

    更新日期:2017-07-21 00:00:00

  • Plutonium in soils from northeast China and its potential application for evaluation of soil erosion.

    abstract::Surface and soil core samples from northeast China were analyzed for Pu isotopes. The measured (240)Pu/(239)Pu atomic ratios and (239 + 240)Pu/(137)Cs activity ratios revealed that the global fallout is the dominant source of Pu and (137)Cs at these sites. Migration behavior of Pu varying with land type and human acti...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep03506

    authors: Xu Y,Qiao J,Hou X,Pan S

    更新日期:2013-12-16 00:00:00

  • Plummeting anthropogenic environmental degradation by amending nutrient-N input method in saffron growing soils of north-west Himalayas.

    abstract::Nitrous-oxide emission and nitrate addition from agriculture to earth's environment are two main agriculture related anthropogenic causes of environmental degradation that needs greater attention. For addressing the aforesaid issue, new techniques/practices need to be developed and implemented. The present investigati...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-021-81739-x

    authors: Sharma A,Kumar S,Khan SA,Kumar A,Mir JI,Sharma OC,Singh DB,Arora S

    更新日期:2021-01-28 00:00:00

  • Formation of neocortical memory circuits for unattended written word forms: neuromagnetic evidence.

    abstract::To master linguistic communication, humans must acquire large vocabularies quickly and effortlessly. Efficient word learning might be facilitated by the ability to rapidly acquire novel word forms even outside the focus of attention, occurring within minutes of repetitive exposure and suggesting fast and automatic lex...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-34029-y

    authors: Partanen EJ,Leminen A,Cook C,Shtyrov Y

    更新日期:2018-10-25 00:00:00

  • A combination of serum iron, ferritin and transferrin predicts outcome in patients with intracerebral hemorrhage.

    abstract::Association of a high-serum ferritin with poor outcome showed that iron might play a detrimental role in the brain after intracerebral hemorrhage (ICH). Here, we investigated changes in serum iron, ferritin, transferrin (Tf) and ceruloplasmin (CP) in patients with ICH (n = 100) at day 1 (admission), 3, 7, 14 and 21 an...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep21970

    authors: Yang G,Hu R,Zhang C,Qian C,Luo QQ,Yung WH,Ke Y,Feng H,Qian ZM

    更新日期:2016-02-22 00:00:00

  • Management of soil pH promotes nitrous oxide reduction and thus mitigates soil emissions of this greenhouse gas.

    abstract::While concerns about human-induced effects on the Earth's climate have mainly concentrated on carbon dioxide (CO2) and methane (CH4), reducing anthropogenic nitrous oxide (N2O) flux, mainly of agricultural origin, also represents an opportunity for substantial mitigation. To develop a solution that induces neither the...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-56694-3

    authors: Hénault C,Bourennane H,Ayzac A,Ratié C,Saby NPA,Cohan JP,Eglin T,Gall CL

    更新日期:2019-12-27 00:00:00

  • The allergic response mediated by fire ant venom proteins.

    abstract::Fire ants are widely studied, invasive and venomous arthropod pests. There is significant biomedical interest in immunotherapy against fire ant stings. However, mainly due to practical reasons, the physiological effects of envenomation has remained poorly characterized. The present study takes advantage of a recently-...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-32327-z

    authors: Zamith-Miranda D,Fox EGP,Monteiro AP,Gama D,Poublan LE,de Araujo AF,Araujo MFC,Atella GC,Machado EA,Diaz BL

    更新日期:2018-09-26 00:00:00

  • Maskless plasmonic lithography at 22 nm resolution.

    abstract::Optical imaging and photolithography promise broad applications in nano-electronics, metrologies, and single-molecule biology. Light diffraction however sets a fundamental limit on optical resolution, and it poses a critical challenge to the down-scaling of nano-scale manufacturing. Surface plasmons have been used to ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep00175

    authors: Pan L,Park Y,Xiong Y,Ulin-Avila E,Wang Y,Zeng L,Xiong S,Rho J,Sun C,Bogy DB,Zhang X

    更新日期:2011-01-01 00:00:00

  • Cluster analysis: a new approach for identification of underlying risk factors for coronary artery disease in essential hypertensive patients.

    abstract::Grading of essential hypertension according to blood pressure (BP) level may not adequately reflect clinical heterogeneity of hypertensive patients. This study was carried out to explore clinical phenotypes in essential hypertensive patients using cluster analysis. This study recruited 513 hypertensive patients and ev...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep43965

    authors: Guo Q,Lu X,Gao Y,Zhang J,Yan B,Su D,Song A,Zhao X,Wang G

    更新日期:2017-03-07 00:00:00

  • Thin films of formamidinium lead iodide (FAPI) deposited using aerosol assisted chemical vapour deposition (AACVD).

    abstract::Formamidinium lead iodide (CH(NH2)2PbI3, FAPI) thin films have been deposited on glass substrates at 150 °C using ambient pressure aerosol assisted chemical vapour deposition (AACVD). The films have been analysed by a range of techniques including powder X-ray diffraction (pXRD), scanning electron microscopy (SEM), en...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-79291-1

    authors: Alam F,Lewis DJ

    更新日期:2020-12-17 00:00:00

  • Speciation of chromium in waters using dispersive micro-solid phase extraction with magnetic ferrite and graphite furnace atomic absorption spectrometry.

    abstract::The combination of a solid-phase microextraction process with graphite furnace atomic absorption spectrometry provides a very sensitive determination method for determining chromium in waters. Freshly prepared ferrite particles are used to retain the chromium species, and then separated by a magnet without the need fo...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-62212-7

    authors: López-García I,Marín-Hernández JJ,Hernández-Córdoba M

    更新日期:2020-03-24 00:00:00

  • Differential DNA methylation of potassium channel KCa3.1 and immune signalling pathways is associated with infant immune responses following BCG vaccination.

    abstract::Bacillus Calmette-Guérin (BCG) is the only licensed vaccine for tuberculosis (TB) and induces highly variable protection against pulmonary disease in different countries. We hypothesised that DNA methylation is one of the molecular mechanisms driving variability in BCG-induced immune responses. DNA methylation in peri...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-31537-9

    authors: Hasso-Agopsowicz M,Scriba TJ,Hanekom WA,Dockrell HM,Smith SG

    更新日期:2018-08-30 00:00:00

  • Shear force modulates the activity of acid-sensing ion channels at low pH or in the presence of non-proton ligands.

    abstract::Acid-sensing ion channels (ASICs) belong to the degenerin/epithelial sodium channel protein family that form mechanosensitive ion channels. Evidence as to whether or not ASICs activity is directly modulated by mechanical force is lacking. Human ASICs (hASIC1V3, hASIC2a and hASIC3a) were heterologously expressed as hom...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-43097-7

    authors: Barth D,Fronius M

    更新日期:2019-05-01 00:00:00

  • Video Recording Can Conveniently Assay Mosquito Locomotor Activity.

    abstract::Anopheles gambiae and Aedes aegypti are perhaps the best studied mosquito species and important carriers of human malaria and arbovirus, respectively. Mosquitoes have daily rhythms in behaviors and show a wide range of activity patterns. Although Anopheles is known to be principally nocturnal and Aedes principally diu...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-61733-5

    authors: Araujo MDS,Guo F,Rosbash M

    更新日期:2020-03-19 00:00:00

  • The adjuvant value of Herba Cistanches when used in combination with statin in murine models.

    abstract::Statins are well known to have muscle toxicity problem. Herba Cistanches (HC) is a Chinese herb traditionally used for pain in the loins and knees. Our previous in vitro study suggested that it could protect against statin-induced muscle toxicity. However, its in vivo protective effect has never been investigated. The...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-10008-7

    authors: Wat E,Ng CF,Koon CM,Zhang C,Gao S,Tomlinson B,Lau CBS

    更新日期:2017-08-24 00:00:00

  • Endocrine disrupter chemicals affect the humoral antimicrobial activities of gilthead seabream males even upon the cease of the exposure.

    abstract::17α-ethynilestradiol (EE2) and tamoxifen (Tmx) are pollutants world-wide distributed in aquatic environments. Gilthead seabream, Sparus aurata L., is highlighted as a species model of intensively culture in anthropogenic disturbed environments. The effects of these pollutants on gilthead seabream reproduction and some...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-64522-2

    authors: Valero Y,López-Cánovas AE,Rodenas MC,Cabas I,García-Hernández P,Arizcun M,García-Ayala A,Chaves-Pozo E

    更新日期:2020-05-14 00:00:00

  • Dim light at night disturbs the daily sleep-wake cycle in the rat.

    abstract::Exposure to light at night (LAN) is associated with insomnia in humans. Light provides the main input to the master clock in the hypothalamic suprachiasmatic nucleus (SCN) that coordinates the sleep-wake cycle. We aimed to develop a rodent model for the effects of LAN on sleep. Therefore, we exposed male Wistar rats t...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep35662

    authors: Stenvers DJ,van Dorp R,Foppen E,Mendoza J,Opperhuizen AL,Fliers E,Bisschop PH,Meijer JH,Kalsbeek A,Deboer T

    更新日期:2016-10-20 00:00:00