DNA copy-number control through inhibition of replication fork progression.

Abstract:

:Proper control of DNA replication is essential to ensure faithful transmission of genetic material and prevent chromosomal aberrations that can drive cancer progression and developmental disorders. DNA replication is regulated primarily at the level of initiation and is under strict cell-cycle regulation. Importantly, DNA replication is highly influenced by developmental cues. In Drosophila, specific regions of the genome are repressed for DNA replication during differentiation by the SNF2 domain-containing protein SUUR through an unknown mechanism. We demonstrate that SUUR is recruited to active replication forks and mediates the repression of DNA replication by directly inhibiting replication fork progression instead of functioning as a replication fork barrier. Mass spectrometry identification of SUUR-associated proteins identified the replicative helicase member CDC45 as a SUUR-associated protein, supporting a role for SUUR directly at replication forks. Our results reveal that control of eukaryotic DNA copy number can occur through the inhibition of replication fork progression.

journal_name

Cell Rep

journal_title

Cell reports

authors

Nordman JT,Kozhevnikova EN,Verrijzer CP,Pindyurin AV,Andreyeva EN,Shloma VV,Zhimulev IF,Orr-Weaver TL

doi

10.1016/j.celrep.2014.10.005

subject

Has Abstract

pub_date

2014-11-06 00:00:00

pages

841-9

issue

3

issn

2211-1247

pii

S2211-1247(14)00859-6

journal_volume

9

pub_type

杂志文章
  • Reprogramming by De-bookmarking the Somatic Transcriptional Program through Targeting of BET Bromodomains.

    abstract::One critical event in reprogramming to pluripotency is erasure of the somatic transcriptional program of starting cells. Here, we present the proof of principle of a strategy for reprogramming to pluripotency facilitated by small molecules that interfere with the somatic transcriptional memory. We show that mild chemi...

    journal_title:Cell reports

    pub_type: 杂志文章

    doi:10.1016/j.celrep.2016.08.060

    authors: Shao Z,Yao C,Khodadadi-Jamayran A,Xu W,Townes TM,Crowley MR,Hu K

    更新日期:2016-09-20 00:00:00

  • Interaction of Discoidin Domain Receptor 1 with a 14-3-3-Beclin-1-Akt1 Complex Modulates Glioblastoma Therapy Sensitivity.

    abstract::Glioblastoma (GBM) is highly refractory to therapy and associated with poor clinical outcome. Here, we reveal a critical function of the promitotic and adhesion-mediating discoidin domain receptor 1 (DDR1) in modulating GBM therapy resistance. In GBM cultures and clinical samples, we show a DDR1 and GBM stem cell mark...

    journal_title:Cell reports

    pub_type: 杂志文章

    doi:10.1016/j.celrep.2019.02.096

    authors: Vehlow A,Klapproth E,Jin S,Hannen R,Hauswald M,Bartsch JW,Nimsky C,Temme A,Leitinger B,Cordes N

    更新日期:2019-03-26 00:00:00

  • Systems-level response to point mutations in a core metabolic enzyme modulates genotype-phenotype relationship.

    abstract::Linking the molecular effects of mutations to fitness is central to understanding evolutionary dynamics. Here, we establish a quantitative relation between the global effect of mutations on the E. coli proteome and bacterial fitness. We created E. coli strains with specific destabilizing mutations in the chromosomal f...

    journal_title:Cell reports

    pub_type: 杂志文章

    doi:10.1016/j.celrep.2015.03.051

    authors: Bershtein S,Choi JM,Bhattacharyya S,Budnik B,Shakhnovich E

    更新日期:2015-04-28 00:00:00

  • FOXO/DAF-16 Activation Slows Down Turnover of the Majority of Proteins in C. elegans.

    abstract::Most aging hypotheses assume the accumulation of damage, resulting in gradual physiological decline and, ultimately, death. Avoiding protein damage accumulation by enhanced turnover should slow down the aging process and extend the lifespan. However, lowering translational efficiency extends rather than shortens the l...

    journal_title:Cell reports

    pub_type: 杂志文章

    doi:10.1016/j.celrep.2016.07.088

    authors: Dhondt I,Petyuk VA,Cai H,Vandemeulebroucke L,Vierstraete A,Smith RD,Depuydt G,Braeckman BP

    更新日期:2016-09-13 00:00:00

  • Molecular and Cellular Organization of Taste Neurons in Adult Drosophila Pharynx.

    abstract::The Drosophila pharyngeal taste organs are poorly characterized despite their location at important sites for monitoring food quality. Functional analysis of pharyngeal neurons has been hindered by the paucity of molecular tools to manipulate them, as well as their relative inaccessibility for neurophysiological inves...

    journal_title:Cell reports

    pub_type: 杂志文章

    doi:10.1016/j.celrep.2017.11.041

    authors: Chen YD,Dahanukar A

    更新日期:2017-12-05 00:00:00

  • Renal Fanconi Syndrome Is Caused by a Mistargeting-Based Mitochondriopathy.

    abstract::We recently reported an autosomal dominant form of renal Fanconi syndrome caused by a missense mutation in the third codon of the peroxisomal protein EHHADH. The mutation mistargets EHHADH to mitochondria, thereby impairing mitochondrial energy production and, consequently, reabsorption of electrolytes and low-molecul...

    journal_title:Cell reports

    pub_type: 杂志文章

    doi:10.1016/j.celrep.2016.04.037

    authors: Assmann N,Dettmer K,Simbuerger JMB,Broeker C,Nuernberger N,Renner K,Courtneidge H,Klootwijk ED,Duerkop A,Hall A,Kleta R,Oefner PJ,Reichold M,Reinders J

    更新日期:2016-05-17 00:00:00

  • Targeted Neurostimulation in Mouse Brains with Non-invasive Ultrasound.

    abstract::Recently developed brain stimulation techniques have significantly advanced our ability to manipulate the brain's function. However, stimulating specific neurons in a desired region without significant surgical invasion remains a challenge. Here, we demonstrate a neuron-specific and region-targeted neural excitation s...

    journal_title:Cell reports

    pub_type: 杂志文章

    doi:10.1016/j.celrep.2020.108033

    authors: Qiu Z,Kala S,Guo J,Xian Q,Zhu J,Zhu T,Hou X,Wong KF,Yang M,Wang H,Sun L

    更新日期:2020-08-18 00:00:00

  • CRKL Mediates p110β-Dependent PI3K Signaling in PTEN-Deficient Cancer Cells.

    abstract::The p110β isoform of PI3K is preferentially activated in many tumors deficient in the phosphatase and tensin homolog (PTEN). However, the mechanism(s) linking PTEN loss to p110β activation remain(s) mysterious. Here, we identify CRKL as a member of the class of PI3Kβ-interacting proteins. Silencing CRKL expression in ...

    journal_title:Cell reports

    pub_type: 杂志文章

    doi:10.1016/j.celrep.2017.06.054

    authors: Zhang J,Gao X,Schmit F,Adelmant G,Eck MJ,Marto JA,Zhao JJ,Roberts TM

    更新日期:2017-07-18 00:00:00

  • Channelrhodopsin-assisted patching: in vivo recording of genetically and morphologically identified neurons throughout the brain.

    abstract::Brain networks contain a large diversity of functionally distinct neuronal elements, each with unique properties, enabling computational capacities and supporting brain functions. Understanding their functional implications for behavior requires the precise identification of the cell types of a network and in vivo mon...

    journal_title:Cell reports

    pub_type: 杂志文章

    doi:10.1016/j.celrep.2014.11.042

    authors: Muñoz W,Tremblay R,Rudy B

    更新日期:2014-12-24 00:00:00

  • A Regulation Loop between YAP and NR4A1 Balances Cell Proliferation and Apoptosis.

    abstract::The Hippo signaling pathway maintains organ size and tissue homeostasis via orchestration of cell proliferation and apoptosis. How this pathway triggers cell apoptosis remains largely unexplored. Here, we identify NR4A1 as a target of the Hippo pathway that mediates the pro-apoptotic and anti-tumor effects of the Hipp...

    journal_title:Cell reports

    pub_type: 杂志文章

    doi:10.1016/j.celrep.2020.108284

    authors: He L,Yuan L,Yu W,Sun Y,Jiang D,Wang X,Feng X,Wang Z,Xu J,Yang R,Zhang W,Feng H,Chen HZ,Zeng YA,Hui L,Wu Q,Zhang Y,Zhang L

    更新日期:2020-10-20 00:00:00

  • In Vivo Functional Mapping of a Cortical Column at Single-Neuron Resolution.

    abstract::The cerebral cortex is organized in vertical columns that contain neurons with similar functions. The cellular micro-architecture of such columns is an essential determinant of brain dynamics and cortical information processing. However, a detailed understanding of columns is incomplete, even in the best studied corti...

    journal_title:Cell reports

    pub_type: 杂志文章

    doi:10.1016/j.celrep.2019.04.007

    authors: Tischbirek CH,Noda T,Tohmi M,Birkner A,Nelken I,Konnerth A

    更新日期:2019-04-30 00:00:00

  • Subregion-Specific Proteomic Signature in the Hippocampus for Recognition Processes in Adult Mice.

    abstract::The hippocampal formation is a brain structure essential for higher-order cognitive functions. It has a complex anatomical organization and cellular composition, and hippocampal subregions have different properties and functional roles. In this study, we used SWATH-MS to determine whether the proteomes of hippocampus ...

    journal_title:Cell reports

    pub_type: 杂志文章

    doi:10.1016/j.celrep.2018.02.079

    authors: von Ziegler LM,Selevsek N,Tweedie-Cullen RY,Kremer E,Mansuy IM

    更新日期:2018-03-20 00:00:00

  • Cdk4 and Cdk6 Couple the Cell-Cycle Machinery to Cell Growth via mTORC1.

    abstract::Cell growth is coupled to cell-cycle progression in mitotically proliferating mammalian cells, but the underlying molecular mechanisms are not well understood. CyclinD-Cdk4/6 is known to phosphorylate RB to promote S-phase entry, but recent work suggests they have additional functions. We show here that CyclinD-Cdk4/6...

    journal_title:Cell reports

    pub_type: 杂志文章

    doi:10.1016/j.celrep.2020.03.068

    authors: Romero-Pozuelo J,Figlia G,Kaya O,Martin-Villalba A,Teleman AA

    更新日期:2020-04-14 00:00:00

  • Histone H3 Serine 28 Is Essential for Efficient Polycomb-Mediated Gene Repression in Drosophila.

    abstract::Trimethylation at histone H3K27 is central to the polycomb repression system. Juxtaposed to H3K27 is a widely conserved phosphorylatable serine residue (H3S28) whose function is unclear. To assess the importance of H3S28, we generated a Drosophila H3 histone mutant with a serine-to-alanine mutation at position 28. H3S...

    journal_title:Cell reports

    pub_type: 杂志文章

    doi:10.1016/j.celrep.2015.04.055

    authors: Yung PY,Stuetzer A,Fischle W,Martinez AM,Cavalli G

    更新日期:2015-06-09 00:00:00

  • Circadian Clock Regulation of Developmental Time in the Kidney.

    abstract::We report the emergence of an endogenous circadian clock that regulates organogenesis in mouse fetal kidney. We detect circadian rhythms both in vivo with transcriptional profiling and ex vivo by bioluminescence. High-resolution structural analysis of embryonic explants reveals that global or local clock disruption re...

    journal_title:Cell reports

    pub_type: 杂志文章

    doi:10.1016/j.celrep.2020.107661

    authors: Dan H,Ruan T,Sampogna RV

    更新日期:2020-05-19 00:00:00

  • The Balance between Mono- and NEDD8-Chains Controlled by NEDP1 upon DNA Damage Is a Regulatory Module of the HSP70 ATPase Activity.

    abstract::Ubiquitin and ubiquitin-like chains are finely balanced by conjugating and de-conjugating enzymes. Alterations in this balance trigger the response to stress conditions and are often observed in pathologies. How such changes are detected is not well understood. We identify the HSP70 chaperone as a sensor of changes in...

    journal_title:Cell reports

    pub_type: 杂志文章

    doi:10.1016/j.celrep.2019.08.070

    authors: Bailly AP,Perrin A,Serrano-Macia M,Maghames C,Leidecker O,Trauchessec H,Martinez-Chantar ML,Gartner A,Xirodimas DP

    更新日期:2019-10-01 00:00:00

  • Sleep Induction by Mechanosensory Stimulation in Drosophila.

    abstract::People tend to fall asleep when gently rocked or vibrated. Experimental studies have shown that rocking promotes sleep in humans and mice. However, the mechanisms underlying the phenomenon are not well understood. A habituation model proposes that habituation, a form of non-associative learning, mediates sleep inducti...

    journal_title:Cell reports

    pub_type: 杂志文章

    doi:10.1016/j.celrep.2020.108462

    authors: Öztürk-Çolak A,Inami S,Buchler JR,McClanahan PD,Cruz A,Fang-Yen C,Koh K

    更新日期:2020-12-01 00:00:00

  • Transcriptomics-Based Screening Identifies Pharmacological Inhibition of Hsp90 as a Means to Defer Aging.

    abstract::Aging strongly influences human morbidity and mortality. Thus, aging-preventive compounds could greatly improve our health and lifespan. Here we screened for such compounds, known as geroprotectors, employing the power of transcriptomics to predict biological age. Using age-stratified human tissue transcriptomes and m...

    journal_title:Cell reports

    pub_type: 杂志文章

    doi:10.1016/j.celrep.2019.03.044

    authors: Janssens GE,Lin XX,Millan-Ariño L,Kavšek A,Sen I,Seinstra RI,Stroustrup N,Nollen EAA,Riedel CG

    更新日期:2019-04-09 00:00:00

  • OTUB1 Is a Key Regulator of RIG-I-Dependent Immune Signaling and Is Targeted for Proteasomal Degradation by Influenza A NS1.

    abstract::Deubiquitylases (DUBs) regulate critical signaling pathways at the intersection of host immunity and viral pathogenesis. Although RIG-I activation is heavily dependent on ubiquitylation, systematic analyses of DUBs that regulate this pathway have not been performed. Using a ubiquitin C-terminal electrophile, we profil...

    journal_title:Cell reports

    pub_type: 杂志文章

    doi:10.1016/j.celrep.2020.01.015

    authors: Jahan AS,Biquand E,Muñoz-Moreno R,Le Quang A,Mok CK,Wong HH,Teo QW,Valkenburg SA,Chin AWH,Man Poon LL,Te Velthuis A,García-Sastre A,Demeret C,Sanyal S

    更新日期:2020-02-04 00:00:00

  • Systems-wide Analysis of Serine ADP-Ribosylation Reveals Widespread Occurrence and Site-Specific Overlap with Phosphorylation.

    abstract::ADP-ribosylation (ADPr) is a reversible posttranslational modification involved in a range of cellular processes. Here, we report system-wide identification of serine ADPr in human cells upon oxidative stress. High-resolution mass spectrometry and unrestricted data processing confirm that serine residues are the major...

    journal_title:Cell reports

    pub_type: 杂志文章

    doi:10.1016/j.celrep.2018.07.083

    authors: Larsen SC,Hendriks IA,Lyon D,Jensen LJ,Nielsen ML

    更新日期:2018-08-28 00:00:00

  • Engrailed Homeoprotein Protects Mesencephalic Dopaminergic Neurons from Oxidative Stress.

    abstract::Engrailed homeoproteins are expressed in adult dopaminergic neurons of the substantia nigra. In Engrailed1 heterozygous mice, these neurons start dying at 6 weeks, are more sensitive to oxidative stress, and progressively develop traits similar to those observed following an acute and strong oxidative stress inflected...

    journal_title:Cell reports

    pub_type: 杂志文章

    doi:10.1016/j.celrep.2015.08.076

    authors: Rekaik H,Blaudin de Thé FX,Fuchs J,Massiani-Beaudoin O,Prochiantz A,Joshi RL

    更新日期:2015-10-13 00:00:00

  • Systematic Characterization of Recurrent Genomic Alterations in Cyclin-Dependent Kinases Reveals Potential Therapeutic Strategies for Cancer Treatment.

    abstract::Recurrent copy-number alterations, mutations, and transcript fusions of the genes encoding CDKs/cyclins are characterized in >10,000 tumors. Genomic alterations of CDKs/cyclins are dominantly driven by copy number aberrations. In contrast to cell-cycle-related CDKs/cyclins, which are globally amplified, transcriptiona...

    journal_title:Cell reports

    pub_type: 杂志文章

    doi:10.1016/j.celrep.2020.107884

    authors: Shan W,Yuan J,Hu Z,Jiang J,Wang Y,Loo N,Fan L,Tang Z,Zhang T,Xu M,Pan Y,Lu J,Long M,Tanyi JL,Montone KT,Fan Y,Hu X,Zhang Y,Zhang L

    更新日期:2020-07-14 00:00:00

  • DET1 and HY5 Control PIF4-Mediated Thermosensory Elongation Growth through Distinct Mechanisms.

    abstract::Plant growth and development are defined by environmental cues. The transcription factor PHYTOCHROME INTERACTING FACTOR 4 (PIF4) is the central signaling hub that integrates environmental cues, including light and temperature, to regulate growth and development. The thermosensory mechanisms controlling the PIF4-mediat...

    journal_title:Cell reports

    pub_type: 杂志文章

    doi:10.1016/j.celrep.2016.12.046

    authors: Gangappa SN,Kumar SV

    更新日期:2017-01-10 00:00:00

  • p73 Is Required for Multiciliogenesis and Regulates the Foxj1-Associated Gene Network.

    abstract::We report that p73 is expressed in multiciliated cells (MCCs), is required for MCC differentiation, and directly regulates transcriptional modulators of multiciliogenesis. Loss of ciliary biogenesis provides a unifying mechanism for many phenotypes observed in p73 knockout mice including hydrocephalus; hippocampal dys...

    journal_title:Cell reports

    pub_type: 杂志文章

    doi:10.1016/j.celrep.2016.02.035

    authors: Marshall CB,Mays DJ,Beeler JS,Rosenbluth JM,Boyd KL,Santos Guasch GL,Shaver TM,Tang LJ,Liu Q,Shyr Y,Venters BJ,Magnuson MA,Pietenpol JA

    更新日期:2016-03-15 00:00:00

  • The Zinc Finger Transcription Factor Sp9 Is Required for the Development of Striatopallidal Projection Neurons.

    abstract::Striatal medium-sized spiny neurons (MSNs), composed of striatonigral and striatopallidal neurons, are derived from the lateral ganglionic eminence (LGE). We find that the transcription factor Sp9 is expressed in LGE progenitors that generate nearly all striatal MSNs and that Sp9 expression is maintained in postmitoti...

    journal_title:Cell reports

    pub_type: 杂志文章

    doi:10.1016/j.celrep.2016.06.090

    authors: Zhang Q,Zhang Y,Wang C,Xu Z,Liang Q,An L,Li J,Liu Z,You Y,He M,Mao Y,Chen B,Xiong ZQ,Rubenstein JL,Yang Z

    更新日期:2016-08-02 00:00:00

  • Control of Long-Term Synaptic Potentiation and Learning by Alternative Splicing of the NMDA Receptor Subunit GluN1.

    abstract::NMDA receptors (NMDARs) are critical for physiological synaptic plasticity, learning, and memory and for pathological plasticity and neuronal death. The GluN1 subunit is encoded by a single gene, GRIN1, with 8 splice variants, but whether the diversity generated by this splicing has physiological consequences remains ...

    journal_title:Cell reports

    pub_type: 杂志文章

    doi:10.1016/j.celrep.2019.11.087

    authors: Sengar AS,Li H,Zhang W,Leung C,Ramani AK,Saw NM,Wang Y,Tu Y,Ross PJ,Scherer SW,Ellis J,Brudno M,Jia Z,Salter MW

    更新日期:2019-12-24 00:00:00

  • The Mutational Landscape of Circulating Tumor Cells in Multiple Myeloma.

    abstract::The development of sensitive and non-invasive "liquid biopsies" presents new opportunities for longitudinal monitoring of tumor dissemination and clonal evolution. The number of circulating tumor cells (CTCs) is prognostic in multiple myeloma (MM), but there is little information on their genetic features. Here, we ha...

    journal_title:Cell reports

    pub_type: 杂志文章

    doi:10.1016/j.celrep.2017.03.025

    authors: Mishima Y,Paiva B,Shi J,Park J,Manier S,Takagi S,Massoud M,Perilla-Glen A,Aljawai Y,Huynh D,Roccaro AM,Sacco A,Capelletti M,Detappe A,Alignani D,Anderson KC,Munshi NC,Prosper F,Lohr JG,Ha G,Freeman SS,Van Allen

    更新日期:2017-04-04 00:00:00

  • TIMELESS Forms a Complex with PARP1 Distinct from Its Complex with TIPIN and Plays a Role in the DNA Damage Response.

    abstract::PARP1 is the main sensor of single- and double-strand breaks in DNA and, in building chains of poly(ADP-ribose), promotes the recruitment of many downstream signaling and effector proteins involved in the DNA damage response (DDR). We show a robust physical interaction between PARP1 and the replication fork protein TI...

    journal_title:Cell reports

    pub_type: 杂志文章

    doi:10.1016/j.celrep.2015.09.017

    authors: Young LM,Marzio A,Perez-Duran P,Reid DA,Meredith DN,Roberti D,Star A,Rothenberg E,Ueberheide B,Pagano M

    更新日期:2015-10-20 00:00:00

  • Plasma Membrane Association but Not Midzone Recruitment of RhoGEF ECT2 Is Essential for Cytokinesis.

    abstract::Cytokinesis, the final step of cell division, begins with the formation of a cleavage furrow. How the mitotic spindle specifies the furrow at the equator in animal cells remains unknown. Current models propose that the concentration of the RhoGEF ECT2 at the spindle midzone and the equatorial plasma membrane directs f...

    journal_title:Cell reports

    pub_type: 杂志文章

    doi:10.1016/j.celrep.2016.11.029

    authors: Kotýnková K,Su KC,West SC,Petronczki M

    更新日期:2016-12-06 00:00:00

  • Post-termination Ribosome Intermediate Acts as the Gateway to Ribosome Recycling.

    abstract::During termination of translation, the nascent peptide is first released from the ribosome, which must be subsequently disassembled into subunits in a process known as ribosome recycling. In bacteria, termination and recycling are mediated by the translation factors RF, RRF, EF-G, and IF3, but their precise roles have...

    journal_title:Cell reports

    pub_type: 杂志文章

    doi:10.1016/j.celrep.2017.06.028

    authors: Prabhakar A,Capece MC,Petrov A,Choi J,Puglisi JD

    更新日期:2017-07-05 00:00:00