Species sorting during biofilm assembly by artificial substrates deployed in a cold seep system.

Abstract:

:Studies focusing on biofilm assembly in deep-sea environments are rarely conducted. To examine the effects of substrate type on microbial community assembly, biofilms were developed on different substrates for different durations at two locations in the Red Sea: in a brine pool and in nearby bottom water (NBW) adjacent to the Thuwal cold seep II. The composition of the microbial communities in 51 biofilms and water samples were revealed by classification of pyrosequenced 16S rRNA gene amplicons. Together with the microscopic characteristics of the biofilms, the results indicate a stronger selection effect by the substrates on the microbial assembly in the brine pool compared with the NBW. Moreover, the selection effect by substrate type was stronger in the early stages compared with the later stages of the biofilm development. These results are consistent with the hypotheses proposed in the framework of species sorting theory, which states that the power of species sorting during microbial community assembly is dictated by habitat conditions, duration and the structure of the source community. Therefore, the results of this study shed light on the control strategy underlying biofilm-associated marine fouling and provide supporting evidence for ecological theories important for understanding the formation of deep-sea biofilms.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Zhang WP,Wang Y,Tian RM,Bougouffa S,Yang B,Cao HL,Zhang G,Wong YH,Xu W,Batang Z,Al-Suwailem A,Zhang XX,Qian PY

doi

10.1038/srep06647

subject

Has Abstract

pub_date

2014-10-17 00:00:00

pages

6647

issn

2045-2322

pii

srep06647

journal_volume

4

pub_type

杂志文章
  • New Formyl Phloroglucinol Meroterpenoids from the Leaves of Eucalyptus robusta.

    abstract::Seven new formyl phloroglucinol meroterpenoids (FPMs), namely eucalrobusones J-P (1-7), as well as three known ones (8-10) were isolated from the leaves of Eucalyptus robusta. Their structures were elucidated by spectroscopic data analysis, and their absolute configurations were determined by applications of the Snatz...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep39815

    authors: Shang ZC,Yang MH,Liu RH,Wang XB,Kong LY

    更新日期:2016-12-22 00:00:00

  • Ligand-dependent responses of the silkworm prothoracicotropic hormone receptor, Torso, are maintained by unusual intermolecular disulfide bridges in the transmembrane region.

    abstract::The insect membrane-protein, Torso, is a member of the receptor-tyrosine-kinase family, and is activated by its ligand, prothoracicotropic hormone (PTTH). Although PTTH is one of the most important regulators of insect development, the mechanism of Torso activation by the hormone has remained elusive. In this study, u...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep22437

    authors: Konogami T,Yang Y,Ogihara MH,Hikiba J,Kataoka H,Saito K

    更新日期:2016-03-01 00:00:00

  • Positron Annihilation Spectroscopy Study of Carbon-Vacancy Interaction in Low-Temperature Bainite.

    abstract::Nano-scale investigations of bainitic structures formed at temperatures below 350 °C have shown that the bainitic ferrite lattice is super-saturated in carbon. A high density of intrinsic defects would be playing a part in the carbon-supersaturation levels detected. In this work, the role of C-vacancy complexes on car...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-57469-x

    authors: Rementeria R,Domínguez-Reyes R,Capdevila C,Garcia-Mateo C,Caballero FG

    更新日期:2020-01-16 00:00:00

  • Task-dependent functional organizations of the visual ventral stream.

    abstract::The visual hierarchy of the ventral stream has been widely studied. However, it remains unclear how the hierarchical system organizes its functional coupling during top-down cognitive process. The present fMRI study investigated task-dependent functional connectivity along the ventral stream, while twenty-eight partic...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-45707-w

    authors: Jo HG,Ito J,Schulte Holthausen B,Baumann C,Grün S,Habel U,Kellermann T

    更新日期:2019-06-27 00:00:00

  • Lithium and GADL1 regulate glycogen synthase kinase-3 activity to modulate KCTD12 expression.

    abstract::Potassium channel tetramerization domain containing 12 (KCTD12), the auxiliary GABAB receptor subunit, is identified as a susceptibility gene for bipolar I (BPI) disorder in the Han Chinese population. Moreover, the single-nucleotide polymorphism (SNP) rs17026688 in glutamate decarboxylase-like protein 1 (GADL1) is sh...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-46655-1

    authors: Wu TN,Chen CK,Lee CS,Wu BJ,Sun HJ,Chang CH,Chen CY,Wu LS,Cheng AT

    更新日期:2019-07-16 00:00:00

  • A chronology of landsliding based on archaeological and documentary data: Pavlovské vrchy Hills, Western Carpathian Flysch Belt.

    abstract::Pavlovské vrchy Hills represent a distinctive elevation near the Czech-Austrian border where the active, dormant and relict landslides cover 12% of the area. Here we focused on the chronology of landsliding in this area using geological, archaeological and historical evidence. The earliest records of landsliding were ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-57551-4

    authors: Bíl M,Krejčí O,Dolák L,Krejčí V,Martínek J,Svoboda J

    更新日期:2020-01-22 00:00:00

  • Tracing the mass flow from glucose and phenylalanine to pinoresinol and its glycosides in Phomopsis sp. XP-8 using stable isotope assisted TOF-MS.

    abstract::Phomopsis sp. XP-8, an endophytic fungus from the bark of Tu-Chung (Eucommia ulmoides Oliv) showed capability to biosynthesize pinoresinol (Pin) and pinoresinol diglucoside (PDG) from glucose (glu) and phenylalanine (Phe). To verify the mass flow in the biosynthesis pathway, [13C6]-labeled glu and [13C6]-labeled Phe w...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-54836-1

    authors: Zhang Y,Shi J,Ni Y,Liu Y,Zhao Z,Zhao X,Gao Z

    更新日期:2019-12-06 00:00:00

  • Activin signaling is an essential component of the TGF-β induced pro-metastatic phenotype in colorectal cancer.

    abstract::Advanced colorectal cancer (CRC) remains a critical health care challenge worldwide. Various TGF-β superfamily members are important in colorectal cancer metastasis, but their signaling effects and predictive value have only been assessed in isolation. Here, we examine cross-regulation and combined functions of the tw...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-05907-8

    authors: Staudacher JJ,Bauer J,Jana A,Tian J,Carroll T,Mancinelli G,Özden Ö,Krett N,Guzman G,Kerr D,Grippo P,Jung B

    更新日期:2017-07-17 00:00:00

  • Differential roles of NF-Y transcription factor in ER chaperone expression and neuronal maintenance in the CNS.

    abstract::The mammalian central nervous system (CNS) contains various types of neurons with different neuronal functions. In contrast to established roles of cell type-specific transcription factors on neuronal specification and maintenance, whether ubiquitous transcription factors have conserved or differential neuronal functi...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep34575

    authors: Yamanaka T,Tosaki A,Miyazaki H,Kurosawa M,Koike M,Uchiyama Y,Maity SN,Misawa H,Takahashi R,Shimogori T,Hattori N,Nukina N

    更新日期:2016-09-30 00:00:00

  • Multiaxial Lenticular Stress-Strain Relationship of Native Myocardium is Preserved by Infarct-Induced Natural Heart Regeneration in Neonatal Mice.

    abstract::Neonatal mice exhibit natural heart regeneration after myocardial infarction (MI) on postnatal day 1 (P1), but this ability is lost by postnatal day 7 (P7). Cardiac biomechanics intricately affect long-term heart function, but whether regenerated cardiac muscle is biomechanically similar to native myocardium remains u...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-63324-w

    authors: Wang H,Bennett-Kennett R,Paulsen MJ,Hironaka CE,Thakore AD,Farry JM,Eskandari A,Lucian HJ,Shin HS,Wu MA,Imbrie-Moore AM,Steele AN,Stapleton LM,Zhu Y,Dauskardt RH,Woo YJ

    更新日期:2020-04-30 00:00:00

  • Fibroblast growth factor receptor signaling in pediatric B-cell precursor acute lymphoblastic leukemia.

    abstract::The FGF receptor signaling pathway is recurrently involved in the leukemogenic processes. Oncogenic fusions of FGFR1 with various fusion partners were described in myeloid proliferative neoplasms, and overexpression and mutations of FGFR3 are common in multiple myeloma. In addition, fibroblast growth factors are abund...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-38169-z

    authors: Jerchel IS,Hoogkamer AQ,Ariës IM,Boer JM,Besselink NJM,Koudijs MJ,Pieters R,den Boer ML

    更新日期:2019-02-12 00:00:00

  • Tunable Magnetocaloric Effect in Ni-Mn-Ga Microwires.

    abstract::Magnetic refrigeration is of great interest due to its high energy efficiency, environmental friendliness and low cost. However, undesired hysteresis losses, concentrated working temperature interval (WTI) and poor mechanical stability are vital drawbacks that hinder its practical application. Off-stoichiometric Ni-Mn...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-35028-9

    authors: Qian M,Zhang X,Wei L,Martin P,Sun J,Geng L,Scott TB,Peng HX

    更新日期:2018-11-08 00:00:00

  • Fast, Cost-effective and Energy Efficient Mercury Removal-Recycling Technology.

    abstract::We herein present a novel and sustainable technology for mercury recycling, with the maximum observed uptake capacity. Facile synthesis of the most efficient (~1.9 gg-1) nano-trap, made of montmorillonite-Fe-iron oxides, was performed to instantaneously remove mercury(II) ions from water. Elemental Hg was recovered fr...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-34172-6

    authors: Ganguly M,Dib S,Ariya PA

    更新日期:2018-11-02 00:00:00

  • Effect of adipose-derived mesenchymal stem cell transplantation on vascular calcification in rats with adenine-induced kidney disease.

    abstract::Previous studies have investigated the use of mesenchymal stem cells (MSCs) to treat damaged kidneys. However, the effect of adipose-derived MSCs (ASCs) on vascular calcification in chronic kidney disease (CKD) is still poorly understood. In the present study, we explored the potential of ASCs for the treatment of CKD...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-14492-9

    authors: Yokote S,Katsuoka Y,Yamada A,Ohkido I,Yokoo T

    更新日期:2017-10-25 00:00:00

  • Liver sinusoidal endothelial cells (LSECs) modifications in patients with chronic hepatitis C.

    abstract::The sinusoidal endothelial cells present in the liver (LSECs) are tipically characterized by the presence of pores (fenestrae). During some pathological conditions LSECs undergo "capillarization", a process characterized by loss of fenestrations and acquisition of a vascular phenotype. In chronic liver disease capilla...

    journal_title:Scientific reports

    pub_type: 临床试验,杂志文章

    doi:10.1038/s41598-019-45114-1

    authors: Baiocchini A,Del Nonno F,Taibi C,Visco-Comandini U,D'Offizi G,Piacentini M,Falasca L

    更新日期:2019-06-19 00:00:00

  • Silicon-core glass fibres as microwire radial-junction solar cells.

    abstract::Vertically aligned radial-junction solar cell designs offer potential improvements over planar geometries, as carrier generation occurs close to the junction for all absorption depths, but most production methods still require a single crystal substrate. Here, we report on the fabrication of such solar cells from poly...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep06283

    authors: Martinsen FA,Smeltzer BK,Nord M,Hawkins T,Ballato J,Gibson UJ

    更新日期:2014-09-04 00:00:00

  • An activation force-based affinity measure for analyzing complex networks.

    abstract::Affinity measure is a key factor that determines the quality of the analysis of a complex network. Here, we introduce a type of statistics, activation forces, to weight the links of a complex network and thereby develop a desired affinity measure. We show that the approach is superior in facilitating the analysis thro...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep00113

    authors: Guo J,Guo H,Wang Z

    更新日期:2011-01-01 00:00:00

  • Giant and reversible room-temperature elastocaloric effect in a single-crystalline Ni-Fe-Ga magnetic shape memory alloy.

    abstract::Good mechanical properties and large adiabatic temperature change render Heusler-type Ni2FeGa-based magnetic shape memory alloys as a promising candidate material for solid-state mechanical cooling application at ambient conditions. Superelastic behavior and associated elastocaloric effect strongly reply on deformatio...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep25500

    authors: Li Y,Zhao D,Liu J

    更新日期:2016-05-03 00:00:00

  • Experimental Realization of a Quantum Pentagonal Lattice.

    abstract::Geometric frustration, in which competing interactions give rise to degenerate ground states, potentially induces various exotic quantum phenomena in magnetic materials. Minimal models comprising triangular units, such as triangular and Kagome lattices, have been investigated for decades to realize novel quantum phase...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep15327

    authors: Yamaguchi H,Okubo T,Kittaka S,Sakakibara T,Araki K,Iwase K,Amaya N,Ono T,Hosokoshi Y

    更新日期:2015-10-15 00:00:00

  • A Route to Terahertz Metamaterial Biosensor Integrated with Microfluidics for Liver Cancer Biomarker Testing in Early Stage.

    abstract::Engineered Terahertz (THz) metamaterials presented an unique characteristics for biosensing application due to their accurately tunable resonance frequency, which is in accord with vibrational frequency of some important biomolecules such as cancer biomarker. However, water absorption in THz regime is an obstacle to e...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-16762-y

    authors: Geng Z,Zhang X,Fan Z,Lv X,Chen H

    更新日期:2017-11-27 00:00:00

  • Risk Model for Prostate Cancer Using Environmental and Genetic Factors in the Spanish Multi-Case-Control (MCC) Study.

    abstract::Prostate cancer (PCa) is the second most common cancer among men worldwide. Its etiology remains largely unknown compared to other common cancers. We have developed a risk stratification model combining environmental factors with family history and genetic susceptibility. 818 PCa cases and 1,006 healthy controls were ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-09386-9

    authors: Gómez-Acebo I,Dierssen-Sotos T,Fernandez-Navarro P,Palazuelos C,Moreno V,Aragonés N,Castaño-Vinyals G,Jiménez-Monleón JJ,Ruiz-Cerdá JL,Pérez-Gómez B,Ruiz-Dominguez JM,Molero JA,Pollán M,Kogevinas M,Llorca J

    更新日期:2017-08-21 00:00:00

  • Sensitive detection of copper ions via ion-responsive fluorescence quenching of engineered porous silicon nanoparticles.

    abstract::Heavy metal pollution has been a problem since the advent of modern transportation, which despite efforts to curb emissions, continues to play a critical role in environmental pollution. Copper ions (Cu2+), in particular, are one of the more prevalent metals that have widespread detrimental ramifications. From this pe...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep35565

    authors: Hwang J,Hwang MP,Choi M,Seo Y,Jo Y,Son J,Hong J,Choi J

    更新日期:2016-10-18 00:00:00

  • Trace elements and C and N isotope composition in two mushroom species from a mine-spill contaminated site.

    abstract::Fungi play a key role in the functioning of soil in terrestrial ecosystems, and in particular in the remediation of degraded soils. The contribution of fungi to carbon and nutrient cycles, along with their capability to mobilise soil trace elements, is well-known. However, the importance of life history strategy for t...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-63194-2

    authors: Gil-Martínez M,Navarro-Fernández CM,Murillo JM,Domínguez MT,Marañón T

    更新日期:2020-04-15 00:00:00

  • MicroRNA profiling of CD3+ CD56+ cytokine-induced killer cells.

    abstract::Studies have proven that IL-2 and IL-15 showed contrasting roles during CIK cells preparation. By employing microarray, we analyzed miRNA expression profiles of PBMC, CIKIL-2 and CIKIL-15. Advanced bioinformatic analyses were performed to explore the key miRNAs which may regulate cell proliferation and anti-tumor acti...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep09571

    authors: Wang W,Li R,Meng M,Wei C,Xie Y,Zhang Y,Jiang L,Dong R,Wang C,Zhong Y,Yang F,Tang W,Jin X,Liu B,Hou Z

    更新日期:2015-03-31 00:00:00

  • Radiation Dosimetry of Inhaled Radioactive Aerosols: CFPD and MCNP Transport Simulations of Radionuclides in the Lung.

    abstract::Despite extensive efforts in studying radioactive aerosols, including the transmission of radionuclides in different chemical matrices throughout the body, the internal organ-specific radiation dose due to inhaled radioactive aerosols has largely relied on experimental deposition data and simplified human phantoms. Co...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-54040-1

    authors: Talaat K,Xi J,Baldez P,Hecht A

    更新日期:2019-11-25 00:00:00

  • Seasonal flow dynamics exacerbate overlap between artisanal fisheries and imperiled Ganges River dolphins.

    abstract::Here we quantify the effects of artisanal fisheries on the ecology of a small cetacean, the Ganges River dolphin (Platanista gangetica gangetica, GRD), in a large river system of Nepal. We examine the size-classes of fisheries' catches, behavioural changes in GRD in response to fishing activities, and diel overlap bet...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-75997-4

    authors: Paudel S,Koprowski JL,Cove MV

    更新日期:2020-11-02 00:00:00

  • Parametric study on the geometrical parameters of a lab-on-a-chip platform with tilted planar electrodes for continuous dielectrophoretic manipulation of microparticles.

    abstract::Advances in lab-on-a-chip (LOC) devices have led to significant improvements in the on-chip manipulation, separation, sorting, and isolation of particles and cells. Among various LOC-based approaches such as inertia-based methods, acoustophoresis, and magnetophoresis, the planar-slanted-electrode dielectrophoresis (DE...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-68699-4

    authors: Dalili A,Taatizadeh E,Tahmooressi H,Tasnim N,Rellstab-Sánchez PI,Shaunessy M,Najjaran H,Hoorfar M

    更新日期:2020-07-16 00:00:00

  • Mice lacking Programmed cell death-1 show a role for CD8(+) T cells in long-term immunity against blood-stage malaria.

    abstract::Even after years of experiencing malaria, caused by infection with Plasmodium species, individuals still have incomplete immunity and develop low-density parasitemia on re-infection. Previous studies using the P. chabaudi (Pch) mouse model to understand the reason for chronic malaria, found that mice with a deletion o...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep26210

    authors: Horne-Debets JM,Karunarathne DS,Faleiro RJ,Poh CM,Renia L,Wykes MN

    更新日期:2016-05-24 00:00:00

  • Nitric oxide triggers a transient metabolic reprogramming in Arabidopsis.

    abstract::Nitric oxide (NO) regulates plant growth and development as well as responses to stress that enhanced its endogenous production. Arabidopsis plants exposed to a pulse of exogenous NO gas were used for untargeted global metabolomic analyses thus allowing the identification of metabolic processes affected by NO. At earl...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep37945

    authors: León J,Costa Á,Castillo MC

    更新日期:2016-11-25 00:00:00

  • Structure and nucleic acid binding properties of KOW domains 4 and 6-7 of human transcription elongation factor DSIF.

    abstract::The human transcription elongation factor DSIF is highly conserved throughout all kingdoms of life and plays multiple roles during transcription. DSIF is a heterodimer, consisting of Spt4 and Spt5 that interacts with RNA polymerase II (RNAP II). DSIF binds to the elongation complex and induces promoter-proximal pausin...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-30042-3

    authors: Zuber PK,Hahn L,Reinl A,Schweimer K,Knauer SH,Gottesman ME,Rösch P,Wöhrl BM

    更新日期:2018-08-03 00:00:00