Epigenome-wide association study for Parkinson's disease.

Abstract:

:A methylation-based EWAS on carefully phenotyped individuals with Parkinson's disease (PD) was conducted to reveal prioritised genes and pathways with statistically significant and sizable changes in PD and in the anxiety that often accompanies it. This was followed by subsequent replication of top-ranked CpG sites. Using the Infinium(®) HumanMethylation 450K beadchip (Illumina Inc., USA), twenty unique genes with a sizable difference in methylation (P(adjusted) < 0.05, Δβ ≥ 0.2), after correction for multiple testing, were identified between PD and controls, while seventeen were identified between PD with anxiety and PD without anxiety. Twelve top ranked, significantly associated loci in PD were evaluated in an independent replicate population using Sequenom EpiTYPER for 219 individuals with similar phenotypes to the cross-sectional case-control discovery design. FANCC cg14115740 and TNKS2 cg11963436 show significant differential methylation between PD cases and controls using both techniques and their Δβ values, which have the same direction of effect, are reasonable to warrant further investigation.

journal_name

Neuromolecular Med

journal_title

Neuromolecular medicine

authors

Moore K,McKnight AJ,Craig D,O'Neill F

doi

10.1007/s12017-014-8332-8

subject

Has Abstract

pub_date

2014-12-01 00:00:00

pages

845-55

issue

4

eissn

1535-1084

issn

1559-1174

journal_volume

16

pub_type

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