Polynomial algebra reveals diverging roles of the unfolded protein response in endothelial cells during ischemia-reperfusion injury.

Abstract:

:The unfolded protein response (UPR)--the endoplasmic reticulum stress response--is found in various pathologies including ischemia-reperfusion injury (IRI). However, its role during IRI is still unclear. Here, by combining two different bioinformatical methods--a method based on ordinary differential equations (Time Series Network Inference) and an algebraic method (probabilistic polynomial dynamical systems)--we identified the IRE1α-XBP1 and the ATF6 pathways as the main UPR effectors involved in cell's adaptation to IRI. We validated these findings experimentally by assessing the impact of their knock-out and knock-down on cell survival during IRI.

journal_name

FEBS Lett

journal_title

FEBS letters

authors

Le Pape S,Dimitrova E,Hannaert P,Konovalov A,Volmer R,Ron D,Thuillier R,Hauet T

doi

10.1016/j.febslet.2014.05.065

subject

Has Abstract

pub_date

2014-08-25 00:00:00

pages

3062-7

issue

17

eissn

0014-5793

issn

1873-3468

pii

S0014-5793(14)00490-6

journal_volume

588

pub_type

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