Biological and bioinformatical approaches to study crosstalk of long-non-coding RNAs and chromatin-modifying proteins.

Abstract:

:Long-non-coding RNA (lncRNA) regulates gene expression through transcriptional and epigenetic regulation as well as alternative splicing in the nucleus. In addition, regulation is achieved at the levels of mRNA translation, storage and degradation in the cytoplasm. During recent years, several studies have described the interaction of lncRNAs with enzymes that confer so-called epigenetic modifications, such as DNA methylation, histone modifications and chromatin structure or remodelling. LncRNA interaction with chromatin-modifying enzymes (CME) is an emerging field that confers another layer of complexity in transcriptional regulation. Given that CME-lncRNA interactions have been identified in many biological processes, ranging from development to disease, comprehensive understanding of underlying mechanisms is important to inspire basic and translational research in the future. In this review, we highlight recent findings to extend our understanding about the functional interdependencies between lncRNAs and CMEs that activate or repress gene expression. We focus on recent highlights of molecular and functional roles for CME-lncRNAs and provide an interdisciplinary overview of recent technical and methodological developments that have improved biological and bioinformatical approaches for detection and functional studies of CME-lncRNA interaction.

journal_name

Cell Tissue Res

journal_title

Cell and tissue research

authors

Backofen R,Vogel T

doi

10.1007/s00441-014-1885-x

subject

Has Abstract

pub_date

2014-06-01 00:00:00

pages

507-26

issue

3

eissn

0302-766X

issn

1432-0878

journal_volume

356

pub_type

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