Shared developmental programme strongly constrains beak shape diversity in songbirds.

Abstract:

:The striking diversity of bird beak shapes is an outcome of natural selection, yet the relative importance of the limitations imposed by the process of beak development on generating such variation is unclear. Untangling these factors requires mapping developmental mechanisms over a phylogeny far exceeding model systems studied thus far. We address this issue with a comparative morphometric analysis of beak shape in a diverse group of songbirds. Here we show that the dynamics of the proliferative growth zone must follow restrictive rules to explain the observed variation, with beak diversity constrained to a three parameter family of shapes, parameterized by length, depth and the degree of shear. We experimentally verify these predictions by analysing cell proliferation in the developing embryonic beaks of the zebra finch. Our findings indicate that beak shape variability in many songbirds is strongly constrained by shared properties of the developmental programme controlling the growth zone.

journal_name

Nat Commun

journal_title

Nature communications

authors

Fritz JA,Brancale J,Tokita M,Burns KJ,Hawkins MB,Abzhanov A,Brenner MP

doi

10.1038/ncomms4700

subject

Has Abstract

pub_date

2014-04-16 00:00:00

pages

3700

issn

2041-1723

pii

ncomms4700

journal_volume

5

pub_type

杂志文章
  • Nuclear lactate dehydrogenase A senses ROS to produce α-hydroxybutyrate for HPV-induced cervical tumor growth.

    abstract::It is well known that high-risk human papilloma virus (HR-HPV) infection is strongly associated with cervical cancer and E7 was identified as one of the key initiators in HPV-mediated carcinogenesis. Here we show that lactate dehydrogenase A (LDHA) preferably locates in the nucleus in HPV16-positive cervical tumors du...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-06841-7

    authors: Liu Y,Guo JZ,Liu Y,Wang K,Ding W,Wang H,Liu X,Zhou S,Lu XC,Yang HB,Xu C,Gao W,Zhou L,Wang YP,Hu W,Wei Y,Huang C,Lei QY

    更新日期:2018-10-24 00:00:00

  • The choline transporter Slc44a2 controls platelet activation and thrombosis by regulating mitochondrial function.

    abstract::Genetic factors contribute to the risk of thrombotic diseases. Recent genome wide association studies have identified genetic loci including SLC44A2 which may regulate thrombosis. Here we show that Slc44a2 controls platelet activation and thrombosis by regulating mitochondrial energetics. We find that Slc44a2 null mic...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-17254-w

    authors: Bennett JA,Mastrangelo MA,Ture SK,Smith CO,Loelius SG,Berg RA,Shi X,Burke RM,Spinelli SL,Cameron SJ,Carey TE,Brookes PS,Gerszten RE,Sabater-Lleal M,de Vries PS,Huffman JE,Smith NL,Morrell CN,Lowenstein CJ

    更新日期:2020-07-13 00:00:00

  • Post-transcriptional 3´-UTR cleavage of mRNA transcripts generates thousands of stable uncapped autonomous RNA fragments.

    abstract::The majority of mammalian genes contain one or more alternative polyadenylation sites. Choice of polyadenylation sites was suggested as one of the underlying mechanisms for generating longer/shorter transcript isoforms. Here, we demonstrate that mature mRNA transcripts can undergo additional cleavage and polyadenylati...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-017-02099-7

    authors: Malka Y,Steiman-Shimony A,Rosenthal E,Argaman L,Cohen-Daniel L,Arbib E,Margalit H,Kaplan T,Berger M

    更新日期:2017-12-11 00:00:00

  • MicroRNA-155 influences B-cell function through PU.1 in rheumatoid arthritis.

    abstract::MicroRNA-155 (miR-155) is an important regulator of B cells in mice. B cells have a critical role in the pathogenesis of rheumatoid arthritis (RA). Here we show that miR-155 is highly expressed in peripheral blood B cells from RA patients compared with healthy individuals, particularly in the IgD-CD27- memory B-cell p...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms12970

    authors: Alivernini S,Kurowska-Stolarska M,Tolusso B,Benvenuto R,Elmesmari A,Canestri S,Petricca L,Mangoni A,Fedele AL,Di Mario C,Gigante MR,Gremese E,McInnes IB,Ferraccioli G

    更新日期:2016-09-27 00:00:00

  • Externalized decondensed neutrophil chromatin occludes pancreatic ducts and drives pancreatitis.

    abstract::Ductal occlusion has been postulated to precipitate focal pancreatic inflammation, while the nature of the primary occluding agents has remained elusive. Neutrophils make use of histone citrullination by peptidyl arginine deiminase-4 (PADI4) in contact to particulate agents to extrude decondensed chromatin as neutroph...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms10973

    authors: Leppkes M,Maueröder C,Hirth S,Nowecki S,Günther C,Billmeier U,Paulus S,Biermann M,Munoz LE,Hoffmann M,Wildner D,Croxford AL,Waisman A,Mowen K,Jenne DE,Krenn V,Mayerle J,Lerch MM,Schett G,Wirtz S,Neurath MF,Herrm

    更新日期:2016-03-11 00:00:00

  • Specifically modified Env immunogens activate B-cell precursors of broadly neutralizing HIV-1 antibodies in transgenic mice.

    abstract::VRC01-class broadly neutralizing HIV-1 antibodies protect animals from experimental infection and could contribute to an effective vaccine response. Their predicted germline forms (gl) bind Env inefficiently, which may explain why they are not elicited by HIV-1 Env-immunization. Here we show that an optimized Env immu...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms10618

    authors: McGuire AT,Gray MD,Dosenovic P,Gitlin AD,Freund NT,Petersen J,Correnti C,Johnsen W,Kegel R,Stuart AB,Glenn J,Seaman MS,Schief WR,Strong RK,Nussenzweig MC,Stamatatos L

    更新日期:2016-02-24 00:00:00

  • Patterned human microvascular grafts enable rapid vascularization and increase perfusion in infarcted rat hearts.

    abstract::Vascularization and efficient perfusion are long-standing challenges in cardiac tissue engineering. Here we report engineered perfusable microvascular constructs, wherein human embryonic stem cell-derived endothelial cells (hESC-ECs) are seeded both into patterned microchannels and the surrounding collagen matrix. In ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-08388-7

    authors: Redd MA,Zeinstra N,Qin W,Wei W,Martinson A,Wang Y,Wang RK,Murry CE,Zheng Y

    更新日期:2019-02-04 00:00:00

  • Dissecting the circuit for blindsight to reveal the critical role of pulvinar and superior colliculus.

    abstract::In patients with damage to the primary visual cortex (V1), residual vision can guide goal-directed movements to targets in the blind field without awareness. This phenomenon has been termed blindsight, and its neural mechanisms are controversial. There should be visual pathways to the higher visual cortices bypassing ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-08058-0

    authors: Kinoshita M,Kato R,Isa K,Kobayashi K,Kobayashi K,Onoe H,Isa T

    更新日期:2019-01-11 00:00:00

  • Kondo-like phonon scattering in thermoelectric clathrates.

    abstract::Crystalline solids are generally known as excellent heat conductors, amorphous materials or glasses as thermal insulators. It has thus come as a surprise that certain crystal structures defy this paradigm. A prominent example are type-I clathrates and other materials with guest-host structures. They sustain low-energy...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-08685-1

    authors: Ikeda MS,Euchner H,Yan X,Tomeš P,Prokofiev A,Prochaska L,Lientschnig G,Svagera R,Hartmann S,Gati E,Lang M,Paschen S

    更新日期:2019-02-21 00:00:00

  • Dawn-dusk asymmetry in the Kelvin-Helmholtz instability at Mercury.

    abstract::The NASA MErcury Surface, Space ENvironment, GEochemistry and Ranging (MESSENGER) spacecraft entered orbital phase around Mercury on 18 March 2011. A surprising consistent feature in the data returned is large-scale vortices that form exclusively on the dusk side of the magnetosphere. Here we present global kinetic hy...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms2676

    authors: Paral J,Rankin R

    更新日期:2013-01-01 00:00:00

  • Stability and complexity in model meta-ecosystems.

    abstract::The diversity of life and its organization in networks of interacting species has been a long-standing theoretical puzzle for ecologists. Ever since May's provocative paper challenging whether 'large complex systems [are] stable' various hypotheses have been proposed to explain when stability should be the rule, not t...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms12457

    authors: Gravel D,Massol F,Leibold MA

    更新日期:2016-08-24 00:00:00

  • Vimentin regulates activation of the NLRP3 inflammasome.

    abstract::Activation of the NLRP3 inflammasome and subsequent maturation of IL-1β have been implicated in acute lung injury (ALI), resulting in inflammation and fibrosis. We investigated the role of vimentin, a type III intermediate filament, in this process using three well-characterized murine models of ALI known to require N...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms7574

    authors: dos Santos G,Rogel MR,Baker MA,Troken JR,Urich D,Morales-Nebreda L,Sennello JA,Kutuzov MA,Sitikov A,Davis JM,Lam AP,Cheresh P,Kamp D,Shumaker DK,Budinger GR,Ridge KM

    更新日期:2015-03-12 00:00:00

  • Loss of BCL9/9l suppresses Wnt driven tumourigenesis in models that recapitulate human cancer.

    abstract::Different thresholds of Wnt signalling are thought to drive stem cell maintenance, regeneration, differentiation and cancer. However, the principle that oncogenic Wnt signalling could be specifically targeted remains controversial. Here we examine the requirement of BCL9/9l, constituents of the Wnt-enhanceosome, for i...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-08586-3

    authors: Gay DM,Ridgway RA,Müller M,Hodder MC,Hedley A,Clark W,Leach JD,Jackstadt R,Nixon C,Huels DJ,Campbell AD,Bird TG,Sansom OJ

    更新日期:2019-02-13 00:00:00

  • Cellobiohydrolase 1 from Trichoderma reesei degrades cellulose in single cellobiose steps.

    abstract::Cellobiohydrolase 1 from Trichoderma reesei (TrCel7A) processively hydrolyses cellulose into cellobiose. Although enzymatic techniques have been established as promising tools in biofuel production, a clear understanding of the motor's mechanistic action has yet to be revealed. Here, we develop an optical tweezers-bas...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms10149

    authors: Brady SK,Sreelatha S,Feng Y,Chundawat SP,Lang MJ

    更新日期:2015-12-10 00:00:00

  • Two distinct catalytic pathways for GH43 xylanolytic enzymes unveiled by X-ray and QM/MM simulations.

    abstract::Xylanolytic enzymes from glycoside hydrolase family 43 (GH43) are involved in the breakdown of hemicellulose, the second most abundant carbohydrate in plants. Here, we kinetically and mechanistically describe the non-reducing-end xylose-releasing exo-oligoxylanase activity and report the crystal structure of a native ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-20620-3

    authors: Morais MAB,Coines J,Domingues MN,Pirolla RAS,Tonoli CCC,Santos CR,Correa JBL,Gozzo FC,Rovira C,Murakami MT

    更新日期:2021-01-14 00:00:00

  • Self-organization of Plk4 regulates symmetry breaking in centriole duplication.

    abstract::During centriole duplication, a single daughter centriole is formed next to the mother centriole. The molecular mechanism that determines a single duplication site remains a long-standing question. Here, we show that intrinsic self-organization of Plk4 is implicated in symmetry breaking in the process of centriole dup...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-09847-x

    authors: Yamamoto S,Kitagawa D

    更新日期:2019-04-18 00:00:00

  • Ultrafast growth of nanocrystalline graphene films by quenching and grain-size-dependent strength and bandgap opening.

    abstract::Nanocrystallization is a well-known strategy to dramatically tune the properties of materials; however, the grain-size effect of graphene at the nanometer scale remains unknown experimentally because of the lack of nanocrystalline samples. Here we report an ultrafast growth of graphene films within a few seconds by qu...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-12662-z

    authors: Zhao T,Xu C,Ma W,Liu Z,Zhou T,Liu Z,Feng S,Zhu M,Kang N,Sun DM,Cheng HM,Ren W

    更新日期:2019-10-24 00:00:00

  • A MST1-FOXO1 cascade establishes endothelial tip cell polarity and facilitates sprouting angiogenesis.

    abstract::Hypoxia is a main driver of sprouting angiogenesis, but how tip endothelial cells are directed to hypoxic regions remains poorly understood. Here, we show that an endothelial MST1-FOXO1 cascade is essential for directional migration of tip cells towards hypoxic regions. In mice, endothelial-specific deletion of either...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-08773-2

    authors: Kim YH,Choi J,Yang MJ,Hong SP,Lee CK,Kubota Y,Lim DS,Koh GY

    更新日期:2019-02-19 00:00:00

  • Mutant p53s generate pro-invasive niches by influencing exosome podocalyxin levels.

    abstract::Mutant p53s (mutp53) increase cancer invasiveness by upregulating Rab-coupling protein (RCP) and diacylglycerol kinase-α (DGKα)-dependent endosomal recycling. Here we report that mutp53-expressing tumour cells produce exosomes that mediate intercellular transfer of mutp53's invasive/migratory gain-of-function by incre...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-07339-y

    authors: Novo D,Heath N,Mitchell L,Caligiuri G,MacFarlane A,Reijmer D,Charlton L,Knight J,Calka M,McGhee E,Dornier E,Sumpton D,Mason S,Echard A,Klinkert K,Secklehner J,Kruiswijk F,Vousden K,Macpherson IR,Blyth K,Bailey P,

    更新日期:2018-11-29 00:00:00

  • Embedding laser generated nanocrystals in BiVO4 photoanode for efficient photoelectrochemical water splitting.

    abstract::Addressing the intrinsic charge transport limitation of metal oxides has been of significance for pursuing viable PEC water splitting photoelectrodes. Growing a photoelectrode with conductive nanoobjects embedded in the matrix is promising for enhanced charge transport but remains a challenge technically. We herein sh...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-10543-z

    authors: Jian J,Xu Y,Yang X,Liu W,Fu M,Yu H,Xu F,Feng F,Jia L,Friedrich D,van de Krol R,Wang H

    更新日期:2019-06-13 00:00:00

  • Author Correction: The effects of mutational processes and selection on driver mutations across cancer types.

    abstract::An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...

    journal_title:Nature communications

    pub_type: 杂志文章,已发布勘误

    doi:10.1038/s41467-020-15800-0

    authors: Temko D,Tomlinson IPM,Severini S,Schuster-Böckler B,Graham TA

    更新日期:2020-04-20 00:00:00

  • Giant spin Hall effect in graphene grown by chemical vapour deposition.

    abstract::Advances in large-area graphene synthesis via chemical vapour deposition on metals like copper were instrumental in the demonstration of graphene-based novel, wafer-scale electronic circuits and proof-of-concept applications such as flexible touch panels. Here, we show that graphene grown by chemical vapour deposition...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms5748

    authors: Balakrishnan J,Koon GK,Avsar A,Ho Y,Lee JH,Jaiswal M,Baeck SJ,Ahn JH,Ferreira A,Cazalilla MA,Castro Neto AH,Özyilmaz B

    更新日期:2014-09-01 00:00:00

  • Stable kinetochore-microtubule attachment is sufficient to silence the spindle assembly checkpoint in human cells.

    abstract::During mitosis, duplicated sister chromatids attach to microtubules emanating from opposing sides of the bipolar spindle through large protein complexes called kinetochores. In the absence of stable kinetochore-microtubule attachments, a cell surveillance mechanism known as the spindle assembly checkpoint (SAC) produc...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms10036

    authors: Tauchman EC,Boehm FJ,DeLuca JG

    更新日期:2015-12-01 00:00:00

  • Cell-permeable organic fluorescent probes for live-cell long-term super-resolution imaging reveal lysosome-mitochondrion interactions.

    abstract::Characterizing the long-term nanometer-scale interactions between lysosomes and mitochondria in live cells is essential for understanding their functions but remains challenging due to limitations of the existing fluorescent probes. Here, we develop cell-permeable organic fluorescent probes for lysosomes with excellen...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-017-01503-6

    authors: Han Y,Li M,Qiu F,Zhang M,Zhang YH

    更新日期:2017-11-03 00:00:00

  • Proposal for dark exciton based chemical sensors.

    abstract::The rapidly increasing use of sensors throughout different research disciplines and the demand for more efficient devices with less power consumption depends critically on the emergence of new sensor materials and novel sensor concepts. Atomically thin transition metal dichalcogenides have a huge potential for sensor ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms14776

    authors: Feierabend M,Berghäuser G,Knorr A,Malic E

    更新日期:2017-03-15 00:00:00

  • Drawing a high-resolution functional map of adeno-associated virus capsid by massively parallel sequencing.

    abstract::Adeno-associated virus (AAV) capsid engineering is an emerging approach to advance gene therapy. However, a systematic analysis on how each capsid amino acid contributes to multiple functions remains challenging. Here we show proof-of-principle and successful application of a novel approach, termed AAV Barcode-Seq, th...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms4075

    authors: Adachi K,Enoki T,Kawano Y,Veraz M,Nakai H

    更新日期:2014-01-01 00:00:00

  • GFI1 facilitates efficient DNA repair by regulating PRMT1 dependent methylation of MRE11 and 53BP1.

    abstract::GFI1 is a transcriptional regulator expressed in lymphoid cells, and an "oncorequisite" factor required for development and maintenance of T-lymphoid leukemia. GFI1 deletion causes hypersensitivity to ionizing radiation, for which the molecular mechanism remains unknown. Here, we demonstrate that GFI1 is required in T...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-03817-5

    authors: Vadnais C,Chen R,Fraszczak J,Yu Z,Boulais J,Pinder J,Frank D,Khandanpour C,Hébert J,Dellaire G,Côté JF,Richard S,Orthwein A,Drobetsky E,Möröy T

    更新日期:2018-04-12 00:00:00

  • Synchronized conductivity modulation to realize broadband lossless magnetic-free non-reciprocity.

    abstract::Recent research has explored the spatiotemporal modulation of permittivity to break Lorentz reciprocity in a manner compatible with integrated-circuit fabrication. However, permittivity modulation is inherently weak and accompanied by loss due to carrier injection, particularly at higher frequencies, resulting in larg...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-017-00798-9

    authors: Dinc T,Tymchenko M,Nagulu A,Sounas D,Alu A,Krishnaswamy H

    更新日期:2017-10-06 00:00:00

  • Author Correction: Identification of multiple risk loci and regulatory mechanisms influencing susceptibility to multiple myeloma.

    abstract::The original version of this Article contained an error in the spelling of a member of the PRACTICAL Consortium, Manuela Gago-Dominguez, which was incorrectly given as Manuela Gago Dominguez. This has now been corrected in both the PDF and HTML versions of the Article. Furthermore, in the original HTML version of this...

    journal_title:Nature communications

    pub_type: 杂志文章,已发布勘误

    doi:10.1038/s41467-018-08107-8

    authors: Went M,Sud A,Försti A,Halvarsson BM,Weinhold N,Kimber S,van Duin M,Thorleifsson G,Holroyd A,Johnson DC,Li N,Orlando G,Law PJ,Ali M,Chen B,Mitchell JS,Gudbjartsson DF,Kuiper R,Stephens OW,Bertsch U,Broderick P,Ca

    更新日期:2019-01-10 00:00:00

  • Atomic scale insights into structure instability and decomposition pathway of methylammonium lead iodide perovskite.

    abstract::Organic-inorganic hybrid perovskites are promising candidates for the next-generation solar cells. Many efforts have been made to study their structures in the search for a better mechanistic understanding to guide the materials optimization. Here, we investigate the structure instability of the single-crystalline CH3...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-07177-y

    authors: Chen S,Zhang X,Zhao J,Zhang Y,Kong G,Li Q,Li N,Yu Y,Xu N,Zhang J,Liu K,Zhao Q,Cao J,Feng J,Li X,Qi J,Yu D,Li J,Gao P

    更新日期:2018-11-15 00:00:00