Structural basis for ubiquitin-mediated antiviral signal activation by RIG-I.

Abstract:

:Ubiquitin (Ub) has important roles in a wide range of intracellular signalling pathways. In the conventional view, ubiquitin alters the signalling activity of the target protein through covalent modification, but accumulating evidence points to the emerging role of non-covalent interaction between ubiquitin and the target. In the innate immune signalling pathway of a viral RNA sensor, RIG-I, both covalent and non-covalent interactions with K63-linked ubiquitin chains (K63-Ubn) were shown to occur in its signalling domain, a tandem caspase activation and recruitment domain (hereafter referred to as 2CARD). Non-covalent binding of K63-Ubn to 2CARD induces its tetramer formation, a requirement for downstream signal activation. Here we report the crystal structure of the tetramer of human RIG-I 2CARD bound by three chains of K63-Ub2. 2CARD assembles into a helical tetramer resembling a 'lock-washer', in which the tetrameric surface serves as a signalling platform for recruitment and activation of the downstream signalling molecule, MAVS. Ubiquitin chains are bound along the outer rim of the helical trajectory, bridging adjacent subunits of 2CARD and stabilizing the 2CARD tetramer. The combination of structural and functional analyses reveals that binding avidity dictates the K63-linkage and chain-length specificity of 2CARD, and that covalent ubiquitin conjugation of 2CARD further stabilizes the Ub-2CARD interaction and thus the 2CARD tetramer. Our work provides unique insights into the novel types of ubiquitin-mediated signal-activation mechanism, and previously unexpected synergism between the covalent and non-covalent ubiquitin interaction modes.

journal_name

Nature

journal_title

Nature

authors

Peisley A,Wu B,Xu H,Chen ZJ,Hur S

doi

10.1038/nature13140

subject

Has Abstract

pub_date

2014-05-01 00:00:00

pages

110-4

issue

7498

eissn

0028-0836

issn

1476-4687

pii

nature13140

journal_volume

509

pub_type

杂志文章

相关文献

NATURE文献大全
  • Structural basis for the spectral difference in luciferase bioluminescence.

    abstract::Fireflies communicate with each other by emitting yellow-green to yellow-orange brilliant light. The bioluminescence reaction, which uses luciferin, Mg-ATP and molecular oxygen to yield an electronically excited oxyluciferin species, is carried out by the enzyme luciferase. Visible light is emitted during relaxation o...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature04542

    authors: Nakatsu T,Ichiyama S,Hiratake J,Saldanha A,Kobashi N,Sakata K,Kato H

    更新日期:2006-03-16 00:00:00

  • Rapid cross-density ocean mixing at mid-depths in the Drake Passage measured by tracer release.

    abstract::Diapycnal mixing (across density surfaces) is an important process in the global ocean overturning circulation. Mixing in the interior of most of the ocean, however, is thought to have a magnitude just one-tenth of that required to close the global circulation by the downward mixing of less dense waters. Some of this ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature12432

    authors: Watson AJ,Ledwell JR,Messias MJ,King BA,Mackay N,Meredith MP,Mills B,Naveira Garabato AC

    更新日期:2013-09-19 00:00:00

  • Assembly of yeast Sec proteins involved in translocation into the endoplasmic reticulum into a membrane-bound multisubunit complex.

    abstract::Secretory-protein translocation into the endoplasmic reticulum (ER) is thought to be catalysed by integral membrane proteins. Genetic selections uncovered three Saccharomyces cerevisiae genes (SEC61, SEC62 and SEC63), mutations in which block import of precursor proteins into the ER lumen in vivo and in vitro. The DNA...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/349806a0

    authors: Deshaies RJ,Sanders SL,Feldheim DA,Schekman R

    更新日期:1991-02-28 00:00:00

  • A gate-latch-lock mechanism for hormone signalling by abscisic acid receptors.

    abstract::Abscisic acid (ABA) is a ubiquitous hormone that regulates plant growth, development and responses to environmental stresses. Its action is mediated by the PYR/PYL/RCAR family of START proteins, but it remains unclear how these receptors bind ABA and, in turn, how hormone binding leads to inhibition of the downstream ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature08613

    authors: Melcher K,Ng LM,Zhou XE,Soon FF,Xu Y,Suino-Powell KM,Park SY,Weiner JJ,Fujii H,Chinnusamy V,Kovach A,Li J,Wang Y,Li J,Peterson FC,Jensen DR,Yong EL,Volkman BF,Cutler SR,Zhu JK,Xu HE

    更新日期:2009-12-03 00:00:00

  • Gene therapy: is IL2RG oncogenic in T-cell development?

    abstract::The gene IL2RG encodes the gamma-chain of the interleukin-2 receptor and is mutated in patients with X-linked severe combined immune deficiency (X-SCID). Woods et al. report the development of thymus tumours in a mouse model of X-SCID after correction by lentiviral overexpression of IL2RG and claim that these were cau...

    journal_title:Nature

    pub_type: 评论,杂志文章

    doi:10.1038/nature05218

    authors: Pike-Overzet K,de Ridder D,Weerkamp F,Baert MR,Verstegen MM,Brugman MH,Howe SJ,Reinders MJ,Thrasher AJ,Wagemaker G,van Dongen JJ,Staal FJ

    更新日期:2006-09-21 00:00:00

  • Increased forest ecosystem carbon and nitrogen storage from nitrogen rich bedrock.

    abstract::Nitrogen (N) limits the productivity of many ecosystems worldwide, thereby restricting the ability of terrestrial ecosystems to offset the effects of rising atmospheric CO(2) emissions naturally. Understanding input pathways of bioavailable N is therefore paramount for predicting carbon (C) storage on land, particular...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature10415

    authors: Morford SL,Houlton BZ,Dahlgren RA

    更新日期:2011-08-31 00:00:00

  • The heat shock response of E. coli is regulated by changes in the concentration of sigma 32.

    abstract::Cells subjected to a heat shock, or a variety of other stresses increase the synthesis of a set of proteins, known as heat shock proteins. This response is apparently universal, occurring in the entire range from bacterial to mammalian cells. In Escherichia coli heat shock protein synthesis transiently increases follo...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/329348a0

    authors: Straus DB,Walter WA,Gross CA

    更新日期:1987-09-24 00:00:00

  • Potential circadian effects on translational failure for neuroprotection.

    abstract::Neuroprotectant strategies that have worked in rodent models of stroke have failed to provide protection in clinical trials. Here we show that the opposite circadian cycles in nocturnal rodents versus diurnal humans1,2 may contribute to this failure in translation. We tested three independent neuroprotective approache...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/s41586-020-2348-z

    authors: Esposito E,Li W,T Mandeville E,Park JH,Şencan I,Guo S,Shi J,Lan J,Lee J,Hayakawa K,Sakadžić S,Ji X,Lo EH

    更新日期:2020-06-01 00:00:00

  • Thin-film thermoelectric devices with high room-temperature figures of merit.

    abstract::Thermoelectric materials are of interest for applications as heat pumps and power generators. The performance of thermoelectric devices is quantified by a figure of merit, ZT, where Z is a measure of a material's thermoelectric properties and T is the absolute temperature. A material with a figure of merit of around u...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/35098012

    authors: Venkatasubramanian R,Siivola E,Colpitts T,O'Quinn B

    更新日期:2001-10-11 00:00:00

  • No evidence for globally coherent warm and cold periods over the preindustrial Common Era.

    abstract::Earth's climate history is often understood by breaking it down into constituent climatic epochs1. Over the Common Era (the past 2,000 years) these epochs, such as the Little Ice Age2-4, have been characterized as having occurred at the same time across extensive spatial scales5. Although the rapid global warming seen...

    journal_title:Nature

    pub_type: 历史文章,杂志文章

    doi:10.1038/s41586-019-1401-2

    authors: Neukom R,Steiger N,Gómez-Navarro JJ,Wang J,Werner JP

    更新日期:2019-07-01 00:00:00

  • Solution structure of a minor and transiently formed state of a T4 lysozyme mutant.

    abstract::Proteins are inherently plastic molecules, whose function often critically depends on excursions between different molecular conformations (conformers). However, a rigorous understanding of the relation between a protein's structure, dynamics and function remains elusive. This is because many of the conformers on its ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature10349

    authors: Bouvignies G,Vallurupalli P,Hansen DF,Correia BE,Lange O,Bah A,Vernon RM,Dahlquist FW,Baker D,Kay LE

    更新日期:2011-08-21 00:00:00

  • Cloning and DNA sequence of double-stranded copies of haemagglutinin genes from H2 and H3 strains elucidates antigenic shift and drift in human influenza virus.

    abstract::Double-stranded DNA copies of the RNA gene coding for the haemagglutinin glycoproteins from human H2 and H3 pandemic strains of influenza virus have been cloned. DNA sequence analysis provides the first reported complete nucleotide sequence of an H2 haemagglutinin gene and a partial sequence (45%) of the H3 gene. The ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/287301a0

    authors: Gething MJ,Bye J,Skehel J,Waterfield M

    更新日期:1980-09-25 00:00:00

  • High sensitivity of tropical precipitation to local sea surface temperature.

    abstract::Precipitation and atmospheric circulation are the coupled processes through which tropical ocean surface temperatures drive global weather and climate1-5. Local sea surface warming tends to increase precipitation, but this local control is difficult to disentangle from remote effects of conditions elsewhere. As an exa...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/s41586-020-2887-3

    authors: Good P,Chadwick R,Holloway CE,Kennedy J,Lowe JA,Roehrig R,Rushley SS

    更新日期:2021-01-01 00:00:00

  • Biophysical mechanism of T-cell receptor triggering in a reconstituted system.

    abstract::A T-cell-mediated immune response is initiated by the T-cell receptor (TCR) interacting with peptide-bound major histocompatibility complex (pMHC) on an infected cell. The mechanism by which this interaction triggers intracellular phosphorylation of the TCR, which lacks a kinase domain, remains poorly understood. Here...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature11220

    authors: James JR,Vale RD

    更新日期:2012-07-05 00:00:00

  • Acidic deposition: decline in mobilization of toxic aluminium.

    abstract::The mobilization of aluminium from acidic forest soils is arguably the most ecologically important consequence of acid deposition in the environment because of its adverse effects on soils, forest vegetation and surface water. Here we show that there has been a significant decline in the concentrations of aluminium sp...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/417242a

    authors: Palmer SM,Driscoll CT

    更新日期:2002-05-16 00:00:00

  • Palaeontology: pterosaur egg with a leathery shell.

    abstract::The recent discovery of a pterosaur egg with embryonic skeleton and soft tissues from the Yixian Formation confirmed that the flying pterosaurs were oviparous. Here we describe another pterosaur egg whose exquisite preservation indicates that the shell structure was soft and leathery. ...

    journal_title:Nature

    pub_type: 历史文章,杂志文章

    doi:10.1038/432572a

    authors: Ji Q,Ji SA,Cheng YN,You HL,Lü JC,Liu YQ,Yuan CX

    更新日期:2004-12-02 00:00:00

  • Targeting early infection to prevent HIV-1 mucosal transmission.

    abstract::Measures to prevent sexual mucosal transmission of human immunodeficiency virus (HIV)-1 are urgently needed to curb the growth of the acquired immunodeficiency syndrome (AIDS) pandemic and ultimately bring it to an end. Studies in animal models and acute HIV-1 infection reviewed here reveal potential viral vulnerabili...

    journal_title:Nature

    pub_type: 杂志文章,评审

    doi:10.1038/nature08757

    authors: Haase AT

    更新日期:2010-03-11 00:00:00

  • Ancient gene flow from early modern humans into Eastern Neanderthals.

    abstract::It has been shown that Neanderthals contributed genetically to modern humans outside Africa 47,000-65,000 years ago. Here we analyse the genomes of a Neanderthal and a Denisovan from the Altai Mountains in Siberia together with the sequences of chromosome 21 of two Neanderthals from Spain and Croatia. We find that a p...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature16544

    authors: Kuhlwilm M,Gronau I,Hubisz MJ,de Filippo C,Prado-Martinez J,Kircher M,Fu Q,Burbano HA,Lalueza-Fox C,de la Rasilla M,Rosas A,Rudan P,Brajkovic D,Kucan Ž,Gušic I,Marques-Bonet T,Andrés AM,Viola B,Pääbo S,Meyer M,Sie

    更新日期:2016-02-25 00:00:00

  • Molecular virology: was the 1918 flu avian in origin?

    abstract::Taubenberger et al. claim that the 1918 influenza virus was derived from an avian source and adapted to humans shortly before the pandemic. However, we do not believe that this conclusion, which has been widely disseminated in the popular press and in scientific journals, is supported by their phylogenetic evidence. ...

    journal_title:Nature

    pub_type: 评论,历史文章,杂志文章

    doi:10.1038/nature04824

    authors: Antonovics J,Hood ME,Baker CH

    更新日期:2006-04-27 00:00:00

  • Extreme winds and waves in the aftermath of a Neoproterozoic glaciation.

    abstract::The most severe excursions in the Earth's climatic history are thought to be associated with Proterozoic glaciations. According to the 'Snowball Earth' hypothesis, the Marinoan glaciation, which ended about 635 million years ago, involved global or nearly global ice cover. At the termination of this glacial period, ra...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature03176

    authors: Allen PA,Hoffman PF

    更新日期:2005-01-13 00:00:00

  • Covalent inhibition revealed by the crystal structure of the caspase-8/p35 complex.

    abstract::Apoptosis is a highly regulated process that is crucial for normal development and homeostasis of multicellular organisms. The p35 protein from baculoviruses effectively prevents apoptosis by its broad-spectrum caspase inhibition. Here we report the crystal structure of p35 in complex with human caspase-8 at 3.0 A res...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/35068604

    authors: Xu G,Cirilli M,Huang Y,Rich RL,Myszka DG,Wu H

    更新日期:2001-03-22 00:00:00

  • High-content genome-wide RNAi screens identify regulators of parkin upstream of mitophagy.

    abstract::An increasing body of evidence points to mitochondrial dysfunction as a contributor to the molecular pathogenesis of neurodegenerative diseases such as Parkinson's disease. Recent studies of the Parkinson's disease associated genes PINK1 (ref. 2) and parkin (PARK2, ref. 3) indicate that they may act in a quality contr...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature12748

    authors: Hasson SA,Kane LA,Yamano K,Huang CH,Sliter DA,Buehler E,Wang C,Heman-Ackah SM,Hessa T,Guha R,Martin SE,Youle RJ

    更新日期:2013-12-12 00:00:00

  • Histone H2A.Z subunit exchange controls consolidation of recent and remote memory.

    abstract::Memory formation is a multi-stage process that initially requires cellular consolidation in the hippocampus, after which memories are downloaded to the cortex for maintenance, in a process termed systems consolidation. Epigenetic mechanisms regulate both types of consolidation, but histone variant exchange, in which c...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature13707

    authors: Zovkic IB,Paulukaitis BS,Day JJ,Etikala DM,Sweatt JD

    更新日期:2014-11-27 00:00:00

  • Crystal structure of the p27Kip1 cyclin-dependent-kinase inhibitor bound to the cyclin A-Cdk2 complex.

    abstract::The crystal structure of the human p27Kip1 kinase inhibitory domain bound to the phosphorylated cyclin A-cyclin-dependent kinase 2 (Cdk2) complex has been determined at 2.3 angstrom. p27Kip1 binds the complex as an extended structure interacting with both cyclin A and Cdk2. On cyclin A, it binds in a groove formed by ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/382325a0

    authors: Russo AA,Jeffrey PD,Patten AK,Massagué J,Pavletich NP

    更新日期:1996-07-25 00:00:00

  • Occluded bound calcium on the phosphorylated sarcoplasmic transport ATPase.

    abstract::The Ca2+ + Mg2+-activated ATPase of the sarcoplasmic reticulum is responsible for the active Ca2+ transport of this membrane system, the key feature of which is the formation of an energy-rich phosphorylated transport enzyme (EP) and its conversion. To understand the Ca2+-transport mechanism, it is essential to clarif...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/290271a0

    authors: Takisawa H,Makinose M

    更新日期:1981-03-19 00:00:00

  • The origin of hydrogen around HD 209458b.

    abstract::Using numerical simulation, Holmström et al. proposed a plausible alternative explanation of the observed Lyman-alpha absorption that was seen during the transit of HD 209458b (ref. 2). They conclude that radiation pressure alone cannot explain the observations and that a peculiar stellar wind is needed. Here we show ...

    journal_title:Nature

    pub_type: 评论,杂志文章

    doi:10.1038/nature07402

    authors: Lecavelier des Etangs A,Vidal-Madjar A,Désert JM

    更新日期:2008-11-13 00:00:00

  • Rearrangement and enhanced expression of c-myc in hepatocellular carcinoma of hepatitis virus infected woodchucks.

    abstract::Hepatocellularcarcinoma (HCC) that occur in woodchucks chronically infected with woodchuck hepatitis virus (WHV) were screened for activation of cellular oncogenes. Enhanced expression and allelic alterations of the c-myc oncogene were found in three HCC out of nine. Variations in the size of the c-myc transcripts, ra...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/324276a0

    authors: Möröy T,Marchio A,Etiemble J,Trépo C,Tiollais P,Buendia MA

    更新日期:1986-11-20 00:00:00

  • Identification of angiogenic activity and the cloning and expression of platelet-derived endothelial cell growth factor.

    abstract::Cloning and sequencing of the complementary DNA for platelet-derived endothelial cell growth factor indicates that it is a novel factor distinct from previously characterized proteins. The factor, a protein with a relative molecular mass of about 45,000, stimulates endothelial cell growth and chemotaxis in vitro and a...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/338557a0

    authors: Ishikawa F,Miyazono K,Hellman U,Drexler H,Wernstedt C,Hagiwara K,Usuki K,Takaku F,Risau W,Heldin CH

    更新日期:1989-04-13 00:00:00

  • Homologous expressed genes in the human sex chromosome pairing region.

    abstract::The human sex chromosomes share a pair of homologous genes which independently encode a cell-surface antigen defined by the monoclonal antibody 12E7 (refs 1, 2; see refs 3, 4 for review). The X-located homologue, MIC2X, escapes X-inactivation and the equivalent Y-located locus, MIC2Y, was one of the first genes shown ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/317739a0

    authors: Buckle V,Mondello C,Darling S,Craig IW,Goodfellow PN

    更新日期:1985-10-24 00:00:00

  • Mechanosensitivity of mammalian auditory hair cells in vitro.

    abstract::Intracellular responses recorded in vitro from the cochleas of anaesthetized mammals have shown that the mechanoreceptive inner and outer hair cells are sharply tuned, accounting for many of the properties of the afferent fibres in the auditory nerve. However, in vivo it has not been possible to measure directly the e...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/321517a0

    authors: Russell IJ,Richardson GP,Cody AR

    更新日期:1986-05-29 00:00:00