Exploring TCGA Pan-Cancer data at the UCSC Cancer Genomics Browser.

Abstract:

:The UCSC Cancer Genomics Browser (https://genome-cancer.ucsc.edu) offers interactive visualization and exploration of TCGA genomic, phenotypic, and clinical data, as produced by the Cancer Genome Atlas Research Network. Researchers can explore the impact of genomic alterations on phenotypes by visualizing gene and protein expression, copy number, DNA methylation, somatic mutation and pathway inference data alongside clinical features, Pan-Cancer subtype classifications and genomic biomarkers. Integrated Kaplan-Meier survival analysis helps investigators to assess survival stratification by any of the information.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Cline MS,Craft B,Swatloski T,Goldman M,Ma S,Haussler D,Zhu J

doi

10.1038/srep02652

subject

Has Abstract

pub_date

2013-10-02 00:00:00

pages

2652

issn

2045-2322

pii

srep02652

journal_volume

3

pub_type

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