The Capsaspora genome reveals a complex unicellular prehistory of animals.

Abstract:

:To reconstruct the evolutionary origin of multicellular animals from their unicellular ancestors, the genome sequences of diverse unicellular relatives are essential. However, only the genome of the choanoflagellate Monosiga brevicollis has been reported to date. Here we completely sequence the genome of the filasterean Capsaspora owczarzaki, the closest known unicellular relative of metazoans besides choanoflagellates. Analyses of this genome alter our understanding of the molecular complexity of metazoans' unicellular ancestors showing that they had a richer repertoire of proteins involved in cell adhesion and transcriptional regulation than previously inferred only with the choanoflagellate genome. Some of these proteins were secondarily lost in choanoflagellates. In contrast, most intercellular signalling systems controlling development evolved later concomitant with the emergence of the first metazoans. We propose that the acquisition of these metazoan-specific developmental systems and the co-option of pre-existing genes drove the evolutionary transition from unicellular protists to metazoans.

journal_name

Nat Commun

journal_title

Nature communications

authors

Suga H,Chen Z,de Mendoza A,Sebé-Pedrós A,Brown MW,Kramer E,Carr M,Kerner P,Vervoort M,Sánchez-Pons N,Torruella G,Derelle R,Manning G,Lang BF,Russ C,Haas BJ,Roger AJ,Nusbaum C,Ruiz-Trillo I

doi

10.1038/ncomms3325

subject

Has Abstract

pub_date

2013-01-01 00:00:00

pages

2325

issn

2041-1723

pii

ncomms3325

journal_volume

4

pub_type

杂志文章
  • Two pathways regulate cortical granule translocation to prevent polyspermy in mouse oocytes.

    abstract::An egg must be fertilized by a single sperm only. To prevent polyspermy, the zona pellucida, a structure that surrounds mammalian eggs, becomes impermeable upon fertilization, preventing the entry of further sperm. The structural changes in the zona upon fertilization are driven by the exocytosis of cortical granules....

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms13726

    authors: Cheeseman LP,Boulanger J,Bond LM,Schuh M

    更新日期:2016-12-19 00:00:00

  • Non-conventional mechanism of ferroelectric fatigue via cation migration.

    abstract::The unique properties of ferroelectric materials enable a plethora of applications, which are hindered by the phenomenon known as ferroelectric fatigue that leads to the degradation of ferroelectric properties with polarization cycling. Multiple microscopic models explaining fatigue have been suggested; however, the c...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-11089-w

    authors: Ievlev AV,Kc S,Vasudevan RK,Kim Y,Lu X,Alexe M,Cooper VR,Kalinin SV,Ovchinnikova OS

    更新日期:2019-07-11 00:00:00

  • A single evolutionary innovation drives the deep evolution of symbiotic N2-fixation in angiosperms.

    abstract::Symbiotic associations occur in every habitat on earth, but we know very little about their evolutionary histories. Current models of trait evolution cannot adequately reconstruct the deep history of symbiotic innovation, because they assume homogenous evolutionary processes across millions of years. Here we use a rec...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms5087

    authors: Werner GD,Cornwell WK,Sprent JI,Kattge J,Kiers ET

    更新日期:2014-06-10 00:00:00

  • Single-shot spectro-temporal characterization of XUV pulses from a seeded free-electron laser.

    abstract::Intense ultrashort X-ray pulses produced by modern free-electron lasers (FELs) allow one to probe biological systems, inorganic materials and molecular reaction dynamics with nanoscale spatial and femtoscale temporal resolution. These experiments require the knowledge, and possibly the control, of the spectro-temporal...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms9075

    authors: De Ninno G,Gauthier D,Mahieu B,Ribič PR,Allaria E,Cinquegrana P,Danailov MB,Demidovich A,Ferrari E,Giannessi L,Penco G,Sigalotti P,Stupar M

    更新日期:2015-08-20 00:00:00

  • A wheat cysteine-rich receptor-like kinase confers broad-spectrum resistance against Septoria tritici blotch.

    abstract::The poverty of disease resistance gene reservoirs limits the breeding of crops for durable resistance against evolutionary dynamic pathogens. Zymoseptoria tritici which causes Septoria tritici blotch (STB), represents one of the most genetically diverse and devastating wheat pathogens worldwide. No fully virulent Z. t...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-20685-0

    authors: Saintenac C,Cambon F,Aouini L,Verstappen E,Ghaffary SMT,Poucet T,Marande W,Berges H,Xu S,Jaouannet M,Favery B,Alassimone J,Sánchez-Vallet A,Faris J,Kema G,Robert O,Langin T

    更新日期:2021-01-19 00:00:00

  • Computational screen-out strategy for electrically pumped organic laser materials.

    abstract::Electrically pumped organic lasing is one of the most challenging issues in organic optoelectronics. We present a systematic theoretical investigation to screen out electrical pumping lasing molecules over a wide range of organic materials. With the electronic structure information obtained from time-dependent density...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-18144-x

    authors: Ou Q,Peng Q,Shuai Z

    更新日期:2020-09-08 00:00:00

  • Toll-like receptor signaling in thymic epithelium controls monocyte-derived dendritic cell recruitment and Treg generation.

    abstract::The development of thymic regulatory T cells (Treg) is mediated by Aire-regulated self-antigen presentation on medullary thymic epithelial cells (mTECs) and dendritic cells (DCs), but the cooperation between these cells is still poorly understood. Here we show that signaling through Toll-like receptors (TLR) expressed...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-16081-3

    authors: Vobořil M,Brabec T,Dobeš J,Šplíchalová I,Březina J,Čepková A,Dobešová M,Aidarova A,Kubovčiak J,Tsyklauri O,Štěpánek O,Beneš V,Sedláček R,Klein L,Kolář M,Filipp D

    更新日期:2020-05-12 00:00:00

  • Proteomic maps of breast cancer subtypes.

    abstract::Systems-wide profiling of breast cancer has almost always entailed RNA and DNA analysis by microarray and sequencing techniques. Marked developments in proteomic technologies now enable very deep profiling of clinical samples, with high identification and quantification accuracy. We analysed 40 oestrogen receptor posi...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms10259

    authors: Tyanova S,Albrechtsen R,Kronqvist P,Cox J,Mann M,Geiger T

    更新日期:2016-01-04 00:00:00

  • Multifunctional molecular modulators for perovskite solar cells with over 20% efficiency and high operational stability.

    abstract::Perovskite solar cells present one of the most prominent photovoltaic technologies, yet their stability, scalability, and engineering at the molecular level remain challenging. We demonstrate a concept of multifunctional molecular modulation of scalable and operationally stable perovskite solar cells that exhibit exce...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-06709-w

    authors: Bi D,Li X,Milić JV,Kubicki DJ,Pellet N,Luo J,LaGrange T,Mettraux P,Emsley L,Zakeeruddin SM,Grätzel M

    更新日期:2018-10-26 00:00:00

  • Modulation of virus-induced NF-κB signaling by NEMO coiled coil mimics.

    abstract::Protein-protein interactions featuring intricate binding epitopes remain challenging targets for synthetic inhibitors. Interactions of NEMO, a scaffolding protein central to NF-κB signaling, exemplify this challenge. Various regulators are known to interact with different coiled coil regions of NEMO, but the topologic...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-15576-3

    authors: Sadek J,Wuo MG,Rooklin D,Hauenstein A,Hong SH,Gautam A,Wu H,Zhang Y,Cesarman E,Arora PS

    更新日期:2020-04-14 00:00:00

  • Mapping tenascin-C interaction with toll-like receptor 4 reveals a new subset of endogenous inflammatory triggers.

    abstract::Pattern recognition underpins innate immunity; the accurate identification of danger, including infection, injury, or tumor, is key to an appropriately targeted immune response. Pathogen detection is increasingly well defined mechanistically, but the discrimination of endogenous inflammatory triggers remains unclear. ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-017-01718-7

    authors: Zuliani-Alvarez L,Marzeda AM,Deligne C,Schwenzer A,McCann FE,Marsden BD,Piccinini AM,Midwood KS

    更新日期:2017-11-17 00:00:00

  • Self-cleaning and surface chemical reactions during hafnium dioxide atomic layer deposition on indium arsenide.

    abstract::Atomic layer deposition (ALD) enables the ultrathin high-quality oxide layers that are central to all modern metal-oxide-semiconductor circuits. Crucial to achieving superior device performance are the chemical reactions during the first deposition cycle, which could ultimately result in atomic-scale perfection of the...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-03855-z

    authors: Timm R,Head AR,Yngman S,Knutsson JV,Hjort M,McKibbin SR,Troian A,Persson O,Urpelainen S,Knudsen J,Schnadt J,Mikkelsen A

    更新日期:2018-04-12 00:00:00

  • FDA-ARGOS is a database with public quality-controlled reference genomes for diagnostic use and regulatory science.

    abstract::FDA proactively invests in tools to support innovation of emerging technologies, such as infectious disease next generation sequencing (ID-NGS). Here, we introduce FDA-ARGOS quality-controlled reference genomes as a public database for diagnostic purposes and demonstrate its utility on the example of two use cases. We...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-11306-6

    authors: Sichtig H,Minogue T,Yan Y,Stefan C,Hall A,Tallon L,Sadzewicz L,Nadendla S,Klimke W,Hatcher E,Shumway M,Aldea DL,Allen J,Koehler J,Slezak T,Lovell S,Schoepp R,Scherf U

    更新日期:2019-07-25 00:00:00

  • Novel loci affecting iron homeostasis and their effects in individuals at risk for hemochromatosis.

    abstract::Variation in body iron is associated with or causes diseases, including anaemia and iron overload. Here, we analyse genetic association data on biochemical markers of iron status from 11 European-population studies, with replication in eight additional cohorts (total up to 48,972 subjects). We find 11 genome-wide-sign...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms5926

    authors: Benyamin B,Esko T,Ried JS,Radhakrishnan A,Vermeulen SH,Traglia M,Gögele M,Anderson D,Broer L,Podmore C,Luan J,Kutalik Z,Sanna S,van der Meer P,Tanaka T,Wang F,Westra HJ,Franke L,Mihailov E,Milani L,Hälldin J,Win

    更新日期:2014-10-29 00:00:00

  • Iron limitation of microbial phosphorus acquisition in the tropical North Atlantic.

    abstract::In certain regions of the predominantly nitrogen limited ocean, microbes can become co-limited by phosphorus. Within such regions, a proportion of the dissolved organic phosphorus pool can be accessed by microbes employing a variety of alkaline phosphatase (APase) enzymes. In contrast to the PhoA family of APases that...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms15465

    authors: Browning TJ,Achterberg EP,Yong JC,Rapp I,Utermann C,Engel A,Moore CM

    更新日期:2017-05-19 00:00:00

  • DNA-enabled rational design of fluorescence-Raman bimodal nanoprobes for cancer imaging and therapy.

    abstract::Recently, surface-enhanced Raman scattering nanoprobes have shown tremendous potential in oncological imaging owing to the high sensitivity and specificity of their fingerprint-like spectra. As current Raman scanners rely on a slow, point-by-point spectrum acquisition, there is an unmet need for faster imaging to cove...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-09173-2

    authors: Pal S,Ray A,Andreou C,Zhou Y,Rakshit T,Wlodarczyk M,Maeda M,Toledo-Crow R,Berisha N,Yang J,Hsu HT,Oseledchyk A,Mondal J,Zou S,Kircher MF

    更新日期:2019-04-26 00:00:00

  • Particle-resolved topological defects of smectic colloidal liquid crystals in extreme confinement.

    abstract::Confined samples of liquid crystals are characterized by a variety of topological defects and can be exposed to external constraints such as extreme confinements with nontrivial topology. Here we explore the intrinsic structure of smectic colloidal layers dictated by the interplay between entropy and an imposed extern...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-20842-5

    authors: Wittmann R,Cortes LBG,Löwen H,Aarts DGAL

    更新日期:2021-01-27 00:00:00

  • Tensor-network approach for quantum metrology in many-body quantum systems.

    abstract::Identification of the optimal quantum metrological protocols in realistic many particle quantum models is in general a challenge that cannot be efficiently addressed by the state-of-the-art numerical and analytical methods. Here we provide a comprehensive framework exploiting matrix product operators (MPO) type tensor...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-13735-9

    authors: Chabuda K,Dziarmaga J,Osborne TJ,Demkowicz-Dobrzański R

    更新日期:2020-01-14 00:00:00

  • Acetylation of histone H4 lysine 5 and 12 is required for CENP-A deposition into centromeres.

    abstract::Centromeres are specified epigenetically through the deposition of the centromere-specific histone H3 variant CENP-A. However, how additional epigenetic features are involved in centromere specification is unknown. Here, we find that histone H4 Lys5 and Lys12 acetylation (H4K5ac and H4K12ac) primarily occur within the...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms13465

    authors: Shang WH,Hori T,Westhorpe FG,Godek KM,Toyoda A,Misu S,Monma N,Ikeo K,Carroll CW,Takami Y,Fujiyama A,Kimura H,Straight AF,Fukagawa T

    更新日期:2016-11-04 00:00:00

  • Human and mouse essentiality screens as a resource for disease gene discovery.

    abstract::The identification of causal variants in sequencing studies remains a considerable challenge that can be partially addressed by new gene-specific knowledge. Here, we integrate measures of how essential a gene is to supporting life, as inferred from viability and phenotyping screens performed on knockout mice by the In...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-14284-2

    authors: Cacheiro P,Muñoz-Fuentes V,Murray SA,Dickinson ME,Bucan M,Nutter LMJ,Peterson KA,Haselimashhadi H,Flenniken AM,Morgan H,Westerberg H,Konopka T,Hsu CW,Christiansen A,Lanza DG,Beaudet AL,Heaney JD,Fuchs H,Gailus-Durner

    更新日期:2020-01-31 00:00:00

  • Ray-optics cloaking devices for large objects in incoherent natural light.

    abstract::A cloak that can hide living creatures from sight is a common feature of mythology but still remains unrealized as a practical device. To preserve the wave phase, the previous cloaking solution proposed by Pendry and colleagues required transformation of the electromagnetic space around the hidden object in such a way...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms3652

    authors: Chen H,Zheng B,Shen L,Wang H,Zhang X,Zheludev NI,Zhang B

    更新日期:2013-01-01 00:00:00

  • Broadband light management using low-Q whispering gallery modes in spherical nanoshells.

    abstract::Light trapping across a wide band of frequencies is important for applications such as solar cells and photodetectors. Here, we demonstrate a new approach to light management by forming whispering-gallery resonant modes inside a spherical nanoshell structure. The geometry of the structure gives rise to a low quality-f...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms1664

    authors: Yao Y,Yao J,Narasimhan VK,Ruan Z,Xie C,Fan S,Cui Y

    更新日期:2012-02-07 00:00:00

  • Local mapping of detector response for reliable quantum state estimation.

    abstract::Improved measurement techniques are central to technological development and foundational scientific exploration. Quantum physics relies on detectors sensitive to non-classical features of systems, enabling precise tests of physical laws and quantum-enhanced technologies including precision measurement and secure comm...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms5332

    authors: Cooper M,Karpiński M,Smith BJ

    更新日期:2014-07-14 00:00:00

  • Compounding impact of severe weather events fuels marine heatwave in the coastal ocean.

    abstract::Exposure to extreme events is a major concern in coastal regions where growing human populations and stressed natural ecosystems are at significant risk to such phenomena. However, the complex sequence of processes that transform an event from notable to extreme can be challenging to identify and hence, limit forecast...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-18339-2

    authors: Dzwonkowski B,Coogan J,Fournier S,Lockridge G,Park K,Lee T

    更新日期:2020-09-22 00:00:00

  • Demographic histories and genetic diversity across pinnipeds are shaped by human exploitation, ecology and life-history.

    abstract::A central paradigm in conservation biology is that population bottlenecks reduce genetic diversity and population viability. In an era of biodiversity loss and climate change, understanding the determinants and consequences of bottlenecks is therefore an important challenge. However, as most studies focus on single sp...

    journal_title:Nature communications

    pub_type: 历史文章,杂志文章

    doi:10.1038/s41467-018-06695-z

    authors: Stoffel MA,Humble E,Paijmans AJ,Acevedo-Whitehouse K,Chilvers BL,Dickerson B,Galimberti F,Gemmell NJ,Goldsworthy SD,Nichols HJ,Krüger O,Negro S,Osborne A,Pastor T,Robertson BC,Sanvito S,Schultz JK,Shafer ABA,Wolf JBW

    更新日期:2018-11-16 00:00:00

  • A temporary indwelling intravascular aphaeretic system for in vivo enrichment of circulating tumor cells.

    abstract::Circulating tumor cells (CTCs) have become an established biomarker for prognosis in patients with various carcinomas. However, current ex vivo CTC isolation technologies rely on small blood volumes from a single venipuncture limiting the number of captured CTCs. This produces statistical variability and inaccurate re...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-09439-9

    authors: Kim TH,Wang Y,Oliver CR,Thamm DH,Cooling L,Paoletti C,Smith KJ,Nagrath S,Hayes DF

    更新日期:2019-04-01 00:00:00

  • RC3H1 post-transcriptionally regulates A20 mRNA and modulates the activity of the IKK/NF-κB pathway.

    abstract::The RNA-binding protein RC3H1 (also known as ROQUIN) promotes TNFα mRNA decay via a 3'UTR constitutive decay element (CDE). Here we applied PAR-CLIP to human RC3H1 to identify ∼ 3,800 mRNA targets with >16,000 binding sites. A large number of sites are distinct from the consensus CDE and revealed a structure-sequence ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms8367

    authors: Murakawa Y,Hinz M,Mothes J,Schuetz A,Uhl M,Wyler E,Yasuda T,Mastrobuoni G,Friedel CC,Dölken L,Kempa S,Schmidt-Supprian M,Blüthgen N,Backofen R,Heinemann U,Wolf J,Scheidereit C,Landthaler M

    更新日期:2015-07-14 00:00:00

  • Identification of the PGRMC1 protein complex as the putative sigma-2 receptor binding site.

    abstract::The sigma-2 receptor, whose gene remains to be cloned, has been validated as a biomarker for tumour cell proliferation. Here we report the use of a novel photoaffinity probe, WC-21, to identify the sigma-2 receptor-binding site. WC-21, a sigma-2 ligand containing both a photoactive azide moiety and a fluorescein isoth...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms1386

    authors: Xu J,Zeng C,Chu W,Pan F,Rothfuss JM,Zhang F,Tu Z,Zhou D,Zeng D,Vangveravong S,Johnston F,Spitzer D,Chang KC,Hotchkiss RS,Hawkins WG,Wheeler KT,Mach RH

    更新日期:2011-07-05 00:00:00

  • Feedforward prediction error signals during episodic memory retrieval.

    abstract::Our memories enable us to form expectations for our future experiences, yet the precise neural mechanisms underlying how we compare any experience to our memory remain unknown. Here, using intracranial EEG recordings, we show that episodic memories formed after a single visual experience establish expectations for fut...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-19828-0

    authors: Haque RU,Inati SK,Levey AI,Zaghloul KA

    更新日期:2020-11-27 00:00:00

  • EPR-aided approach for solution structure determination of large RNAs or protein-RNA complexes.

    abstract::High-resolution structural information on RNA and its functionally important complexes with proteins is dramatically underrepresented compared with proteins but is urgently needed for understanding cellular processes at the molecular and atomic level. Here we present an EPR-based protocol to help solving large RNA and...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms4669

    authors: Duss O,Yulikov M,Jeschke G,Allain FH

    更新日期:2014-05-14 00:00:00