Proteomic analysis of hearts from Akita mice suggests that increases in soluble epoxide hydrolase and antioxidative programming are key changes in early stages of diabetic cardiomyopathy.

Abstract:

:Cardiovascular disease is the leading cause of diabetic morbidity with more than 10% of type 1 diabetes mellitus (T1DM) patients dying before they are 40 years old. This study utilized Akita mice, a murine model with T1DM progression analogous to that of humans. Diabetic cardiomyopathy in Akita mice presents as cardiac atrophy and diastolic impairment at 3 months of age, but we observed cardiac atrophy in hearts from recently diabetic mice (5 weeks old). Hearts from 5 week old mice were analyzed with a rigorous label-free quantitative proteomic approach to identify proteins that may play a critical role in the early pathophysiology of diabetic cardiomyopathy. Eleven proteins were differentially expressed in diabetic hearts: products of GANC, PLEKHN1, COL1A1, GSTK1, ATP1A3, RAP1A, ACADS, EEF1A1, HRC, EPHX2, and PKP2 (gene names). These proteins are active in cellular defense, metabolism, insulin signaling, and calcium handling. Further analysis of Akita hearts using biochemical assays showed that the cellular defenses against oxidative stress were increased, including antioxidant capacity (2-3-fold) and glutathione levels (20%). Immunoblots of five and twelve week old Akita heart homogenates showed 30% and 145% increases in expression of soluble epoxide hydrolase (sEH (gene name EPHX2)), respectively, and an approximate 100% increase in sEH was seen in gastrocnemius tissue of 12 week old Akita mice. In contrast, 12 week old Akita livers showed no change in sEH expression. Our results suggest that increases in sEH and antioxidative programming are key factors in the development of type 1 diabetic cardiomyopathy in Akita mice and reveal several other proteins whose expression may be important in this complex pathophysiology.

journal_name

J Proteome Res

authors

Dewey S,Lai X,Witzmann FA,Sohal M,Gomes AV

doi

10.1021/pr4004739

subject

Has Abstract

pub_date

2013-09-06 00:00:00

pages

3920-33

issue

9

eissn

1535-3893

issn

1535-3907

journal_volume

12

pub_type

杂志文章
  • Quantitative overview of N2 fixation in Nostoc punctiforme ATCC 29133 through cellular enrichments and iTRAQ shotgun proteomics.

    abstract::Nostoc punctiforme ATCC 29133 is a photoautotrophic cyanobacterium with the capacity to fix atmospheric N 2. Its ability to mediate this process is similar to that described for Nostoc sp. PCC 7120, where vegetative cells differentiate into heterocysts. Quantitative proteomic investigations at both the filament level ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr800285v

    authors: Ow SY,Noirel J,Cardona T,Taton A,Lindblad P,Stensjö K,Wright PC

    更新日期:2009-01-01 00:00:00

  • Serum metabolic signature of minimal hepatic encephalopathy by (1)H-nuclear magnetic resonance.

    abstract::Minimal hepatic encephalopathy (MHE) reduces quality of life of cirrhotic patients, predicts overt hepatic encephalopathy, and is associated with poor prognosis. We hypothesized that MHE arises once metabolic alterations derived from the liver reach a particular threshold. Our aim was to assess whether metabolic profi...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr100486e

    authors: Jiménez B,Montoliu C,MacIntyre DA,Serra MA,Wassel A,Jover M,Romero-Gomez M,Rodrigo JM,Pineda-Lucena A,Felipo V

    更新日期:2010-10-01 00:00:00

  • Proteomics approach to identify the interacting partners of cellular prion protein and characterization of Rab7a interaction in neuronal cells.

    abstract::The present study was undertaken to identify proteins interacting with PrP(C) that could provide new insights into its physiological functions and pathological role. Human PrP(C) was expressed in prion protein-deficient murine hippocampus (HpL3-4) neuronal cells. The PrP(C) along with its interacting proteins were aff...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr2001989

    authors: Zafar S,von Ahsen N,Oellerich M,Zerr I,Schulz-Schaeffer WJ,Armstrong VW,Asif AR

    更新日期:2011-07-01 00:00:00

  • Evolutionary conservation of mammalian sperm proteins associates with overall, not tyrosine, phosphorylation in human spermatozoa.

    abstract::We investigated possible associations between sequence evolution of mammalian sperm proteins and their phosphorylation status in humans. As a reference, spermatozoa from three normozoospermic men were analyzed combining two-dimensional gel electrophoresis, immunoblotting, and mass spectrometry. We identified 99 sperm ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr400228c

    authors: Schumacher J,Ramljak S,Asif AR,Schaffrath M,Zischler H,Herlyn H

    更新日期:2013-12-06 00:00:00

  • Characterization of Metabolomic Profile Associated with Metabolic Improvement after Bariatric Surgery in Subjects with Morbid Obesity.

    abstract::The exact impact of bariatric surgery in metabolically "healthy" (MH) or "unhealthy" (MU) phenotypes for the study of the metabolic improvement is still unknown. We applied an untargeted LC-ESI-TripleTOF-MS-driven metabolomics approach in serum samples from 39 patients with morbid obesity (MH and MU) 1, 3, and 6 month...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.8b00144

    authors: Palau-Rodriguez M,Tulipani S,Marco-Ramell A,Miñarro A,Jauregui O,Gonzalez-Dominguez R,Sanchez-Pla A,Ramos-Molina B,Tinahones FJ,Andres-Lacueva C

    更新日期:2018-08-03 00:00:00

  • Protein expression profiles of necrosis and apoptosis induced by 5-fluoro-2'-deoxyuridine in mouse cancer cells.

    abstract::We have investigated the molecular mechanisms regulating the necrosis and apoptosis that occur on treatment of mouse mammary tumor FM3A cells with 5-fluoro-2'-deoxyuridine (FUdR), a potent anticancer agent, using the original clone F28-7 and its variant F28-7-A cells. Previously, we reported an interesting observation...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr9010537

    authors: Sato A,Satake A,Hiramoto A,Wataya Y,Kim HS

    更新日期:2010-05-07 00:00:00

  • Evaluation of a Yeast Two-Hybrid Library by High-Throughput Sequencing.

    abstract::Yeast two-hybridization (Y2H) is a classical method to study protein-protein interactions in organisms, and the top limitation of Y2H is the high ratio of false negatives and false positives. The most efficient way to reduce this error is to improve the quality of the library. The traditional library quality evaluatio...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.0c00189

    authors: Yu Q,Hu Y,Su J,Li P,Zhang L,Fu X,Chen F,Song A

    更新日期:2020-08-07 00:00:00

  • Targeting XIAP and PPARγ in Granulosa Cell Tumors Alters Metabolic Signaling.

    abstract::Ovarian granulosa cell tumors (GCTs) are hormonally active cancers characterized by indolent growth and late, invasive relapse. No therapies have yet proven to be efficacious. We previously reported that the inhibition of the antiapoptotic X-linked inhibitor of apoptosis protein (XIAP) removes transrepression of the p...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.8b00917

    authors: Leung DTH,Rainczuk A,Nguyen T,Stephens A,Silke J,Fuller PJ,Chu S

    更新日期:2019-04-05 00:00:00

  • Analysis of oxygen/glucose-deprivation-induced changes in SUMO3 conjugation using SILAC-based quantitative proteomics.

    abstract::Transient cerebral ischemia dramatically activates small ubiquitin-like modifier (SUMO2/3) conjugation. In cells exposed to 6 h of transient oxygen/glucose deprivation (OGD), a model of ischemia, SUMOylation increases profoundly between 0 and 30 min following re-oxygenation. To elucidate the effect of transient OGD on...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr200834f

    authors: Yang W,Thompson JW,Wang Z,Wang L,Sheng H,Foster MW,Moseley MA,Paschen W

    更新日期:2012-02-03 00:00:00

  • Global De Novo Protein-Protein Interactome Elucidates Interactions of Drought-Responsive Proteins in Horse Gram (Macrotyloma uniflorum).

    abstract::Inspired by the availability of de novo transcriptome of horse gram (Macrotyloma uniflorum) and recent developments in systems biology studies, the first ever global protein-protein interactome (PPI) map was constructed for this highly drought-tolerant legume. Large-scale studies of PPIs and the constructed database w...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.5b01114

    authors: Bhardwaj J,Gangwar I,Panzade G,Shankar R,Yadav SK

    更新日期:2016-06-03 00:00:00

  • Dynamic omics approach identifies nutrition-mediated microbial interactions.

    abstract::"Omics" studies reported to date have dealt with either thoroughly characterized single species or poorly explored meta-microbial communities. However, these techniques are capable of producing highly informative data for the analysis of interactions between two organisms. We examined the bacterial interaction between...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr100989c

    authors: Nakanishi Y,Fukuda S,Chikayama E,Kimura Y,Ohno H,Kikuchi J

    更新日期:2011-02-04 00:00:00

  • BioNSi: A Discrete Biological Network Simulator Tool.

    abstract::Modeling and simulation of biological networks is an effective and widely used research methodology. The Biological Network Simulator (BioNSi) is a tool for modeling biological networks and simulating their discrete-time dynamics, implemented as a Cytoscape App. BioNSi includes a visual representation of the network t...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.6b00278

    authors: Rubinstein A,Bracha N,Rudner L,Zucker N,Sloin HE,Chor B

    更新日期:2016-08-05 00:00:00

  • Intrinsic disorder in nuclear hormone receptors.

    abstract::Many proteins possess intrinsic disorder (ID) and lack a rigid three-dimensional structure in at least part of their sequence. ID has been hypothesized to influence protein-protein and protein-ligand interactions. We calculated ID for nearly 400 vertebrate and invertebrate members of the biomedically important nuclear...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr8003024

    authors: Krasowski MD,Reschly EJ,Ekins S

    更新日期:2008-10-01 00:00:00

  • Application of a Novel Mass Spectral Data Acquisition Approach to Lipidomic Analysis of Liver Extracts from Sitaxentan-Treated Liver-Humanized PXB Mice.

    abstract::The application of a data-independent acquisition (DIA) method ("SONAR") that employs a rapidly scanning quadrupole is described for the lipidomic analysis of complex biological extracts. Using this approach, the MS acquisition window can be varied between 1 and 25 Da, enabling the isolation of ions prior to their ent...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.9b00334

    authors: King A,Baginski M,Morikawa Y,Rainville PD,Gethings LA,Wilson ID,Plumb RS

    更新日期:2019-11-01 00:00:00

  • Extended Snake Venomics by Top-Down In-Source Decay: Investigating the Newly Discovered Anatolian Meadow Viper Subspecies, Vipera anatolica senliki.

    abstract::Herein, we report on the venom proteome of Vipera anatolica senliki, a recently discovered and hitherto unexplored subspecies of the critically endangered Anatolian meadow viper endemic to the Antalya Province of Turkey. Integrative venomics, including venom gland transcriptomics as well as complementary bottom-up and...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.9b00869

    authors: Hempel BF,Damm M,Mrinalini,Göçmen B,Karış M,Nalbantsoy A,Kini RM,Süssmuth RD

    更新日期:2020-04-03 00:00:00

  • Quantitative phosphoproteomic analysis of T cell receptor signaling in diabetes prone and resistant mice.

    abstract::Type 1 diabetes, in human patients and NOD mice, results from an immune attack on insulin-producing beta-cells of the pancreas by autoreactive T lymphocytes. In NOD mice, genetically controlled perturbations in the signaling pathways downstream of the antigen-specific T cell receptor (TCR) may be instrumental in the a...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr100035b

    authors: Iwai LK,Benoist C,Mathis D,White FM

    更新日期:2010-06-04 00:00:00

  • Metabolic flux analysis and visualization.

    abstract::One of the ultimate goals of systems biology research is to obtain a comprehensive understanding of the control mechanisms of complex cellular metabolisms. Metabolic Flux Analysis (MFA) is a important method for the quantitative estimation of intracellular metabolic flows through metabolic pathways and the elucidation...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr2002885

    authors: Toya Y,Kono N,Arakawa K,Tomita M

    更新日期:2011-08-05 00:00:00

  • MS Amanda, a universal identification algorithm optimized for high accuracy tandem mass spectra.

    abstract::Today's highly accurate spectra provided by modern tandem mass spectrometers offer considerable advantages for the analysis of proteomic samples of increased complexity. Among other factors, the quantity of reliably identified peptides is considerably influenced by the peptide identification algorithm. While most wide...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr500202e

    authors: Dorfer V,Pichler P,Stranzl T,Stadlmann J,Taus T,Winkler S,Mechtler K

    更新日期:2014-08-01 00:00:00

  • Interaction of Drug Candidates with Various SARS-CoV-2 Receptors: An in Silico Study to Combat COVID-19.

    abstract::The world is currently facing the COVID-19 pandemic caused by the SARS-CoV-2 virus. The pandemic is causing the death of people around the world, and public and social health measures to slow or prevent the spread of COVID-19 are being implemented with the involvement of all members of society. Research institutions a...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.0c00327

    authors: Barros RO,Junior FLCC,Pereira WS,Oliveira NMN,Ramos RM

    更新日期:2020-11-06 00:00:00

  • iMonDB: Mass Spectrometry Quality Control through Instrument Monitoring.

    abstract::Over the past few years, awareness has risen that for mass-spectrometry-based proteomics methods to mature into everyday analytical and clinical practices, extensive quality assessment is mandatory. A currently overlooked source of qualitative information originates from the mass spectrometer itself. Apart from the ac...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.5b00127

    authors: Bittremieux W,Willems H,Kelchtermans P,Martens L,Laukens K,Valkenborg D

    更新日期:2015-05-01 00:00:00

  • Systematic analyses of the transcriptome, translatome, and proteome provide a global view and potential strategy for the C-HPP.

    abstract::To estimate the potential of the state-of-the-art proteomics technologies on full coverage of the encoding gene products, the Chinese Human Chromosome Proteome Consortium (CCPC) applied a multiomics strategy to systematically analyze the transciptome, translatome, and proteome of the same cultured hepatoma cells with ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr4009018

    authors: Chang C,Li L,Zhang C,Wu S,Guo K,Zi J,Chen Z,Jiang J,Ma J,Yu Q,Fan F,Qin P,Han M,Su N,Chen T,Wang K,Zhai L,Zhang T,Ying W,Xu Z,Zhang Y,Liu Y,Liu X,Zhong F,Shen H,Wang Q,Hou G,Zhao H,Li G,Liu S,G

    更新日期:2014-01-03 00:00:00

  • Solid Digestion of Demineralized Bone as a Method To Access Potentially Insoluble Proteins and Post-Translational Modifications.

    abstract::Bone proteomics is an expanding field for understanding protein changes associated with disease as well as characterizing and detecting proteins preserved in fossil bone. Most previous studies have utilized a protocol with demineralization and extraction approach to isolate and characterize proteins from bone. Through...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.7b00670

    authors: Cleland TP

    更新日期:2018-01-05 00:00:00

  • Proteome analysis of antiproliferative mechanism of 12-O-tetradecanoylphorbol 13-acetate on cultured nasopharyngeal carcinoma CNE2 cells.

    abstract::12-O-Tetradecanoyl-phorbol-13-acetate (TPA) is a plant derivative with multiple function as tumor promoter, differentiation revulsant or leukemia therapy drug. The molecular mechanism of its function is perplexing. Many studies have focused on the mechanism of TPA stimulation in tumor promotion of mouse models or term...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr0497677

    authors: Jiang P,Gan M,Huang H,Shen X,Wang S,Yao K

    更新日期:2005-03-01 00:00:00

  • Comprehensive appraisal of the extracellular proteins from a monoderm bacterium: theoretical and empirical exoproteomes of Listeria monocytogenes EGD-e by secretomics.

    abstract::Defined as proteins actively transported via secretion systems, secreted proteins can have radically different subcellular destinations in monoderm (Gram-positive) bacteria. From degradative enzymes in saprophytes to virulence factors in pathogens, secreted proteins are the main tools used by bacteria to interact with...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr1003642

    authors: Desvaux M,Dumas E,Chafsey I,Chambon C,Hébraud M

    更新日期:2010-10-01 00:00:00

  • Quantitative Proteomics Reveals Potential Crosstalk between a Small RNA CoaR and a Two-Component Regulator Slr1037 in Synechocystis sp. PCC6803.

    abstract::Bacterial small RNAs (sRNAs) and two-component systems (TCSs) were two vital regulatory mechanisms employed by microorganisms to respond to environmental changes and stresses. As a promising "autotrophic cell factory", photosynthetic cyanobacteria have attracted a lot of attention these years. Although most studies fo...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.7b00243

    authors: Sun T,Chen L,Zhang W

    更新日期:2017-08-04 00:00:00

  • Unrestricted Mass Spectrometric Data Analysis for Identification, Localization, and Quantification of Oxidative Protein Modifications.

    abstract::Oxidation generates multiple diverse post-translational modifications resulting in changes in protein structure and function associated with a wide range of diseases. Of these modifications, carbonylations have often been used as hallmarks of oxidative damage. However, accumulating evidence supports the hypothesis tha...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.7b00330

    authors: Rykær M,Svensson B,Davies MJ,Hägglund P

    更新日期:2017-11-03 00:00:00

  • Venom Peptide Repertoire of the European Myrmicine Ant Manica rubida: Identification of Insecticidal Toxins.

    abstract::Using an integrated transcriptomic and proteomic approach, we characterized the venom peptidome of the European red ant, Manica rubida. We identified 13 "myrmicitoxins" that share sequence similarities with previously identified ant venom peptides, one of them being identified as an EGF-like toxin likely resulting fro...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.0c00048

    authors: Touchard A,Aili SR,Téné N,Barassé V,Klopp C,Dejean A,Kini RM,Mrinalini,Coquet L,Jouenne T,Lefranc B,Leprince J,Escoubas P,Nicholson GM,Treilhou M,Bonnafé E

    更新日期:2020-04-03 00:00:00

  • Modulation of the oviductal environment by gametes.

    abstract::The notion of a gamete recognition system that alerts females to the presence of gametes in their reproductive tract profoundly influences our understanding of the physiology of events leading to conception and the bearing of offspring. Here, we show that the female responds to gametes within her tract by modulating t...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr070349m

    authors: Georgiou AS,Snijders AP,Sostaric E,Aflatoonian R,Vazquez JL,Vazquez JM,Roca J,Martinez EA,Wright PC,Fazeli A

    更新日期:2007-12-01 00:00:00

  • An integrated proteomic workflow for two-dimensional differential gel electrophoresis and robotic spot picking.

    abstract::New technologies have advanced the field of proteomics, and a number of companies have developed innovative platforms to drive this research. However, significant challenges are often encountered when trying to integrate complementary technologies from multiple manufacturers. We have developed a software and hardware ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr050465u

    authors: Mahnke RC,Corzett TH,McCutchen-Maloney SL,Chromy BA

    更新日期:2006-09-01 00:00:00

  • Analysis of genomic and proteomic data using advanced literature mining.

    abstract::High-throughput technologies, such as proteomic screening and DNA micro-arrays, produce vast amounts of data requiring comprehensive analytical methods to decipher the biologically relevant results. One approach would be to manually search the biomedical literature; however, this would be an arduous task. We developed...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr0340227

    authors: Hu Y,Hines LM,Weng H,Zuo D,Rivera M,Richardson A,LaBaer J

    更新日期:2003-07-01 00:00:00