Femtosecond optical transfection of individual mammalian cells.

Abstract:

:Laser-mediated gene transfection into mammalian cells has recently emerged as a powerful alternative to more traditional transfection techniques. In particular, the use of a femtosecond-pulsed laser operating in the near-infrared (NIR) region has been proven to provide single-cell selectivity, localized delivery, low toxicity and consistent performance. This approach can easily be integrated with advanced multimodal live-cell microscopy and micromanipulation techniques. The efficiency of this technique depends on an understanding by the user of both biology and physics. Therefore, in this protocol we discuss the subtleties that apply to both fields, including sample preparation, alignment and calibration of laser optics and their integration into a microscopy platform. The entire protocol takes ~5 d to complete, from the initial setup of the femtosecond optical transfection system to the final stage of fluorescence imaging to assay for successful expression of the gene of interest.

journal_name

Nat Protoc

journal_title

Nature protocols

authors

Antkowiak M,Torres-Mapa ML,Stevenson DJ,Dholakia K,Gunn-Moore FJ

doi

10.1038/nprot.2013.071

subject

Has Abstract

pub_date

2013-06-01 00:00:00

pages

1216-33

issue

6

eissn

1754-2189

issn

1750-2799

pii

nprot.2013.071

journal_volume

8

pub_type

杂志文章
  • A convenient, high-throughput method for enzyme-luminescence detection of dopamine released from PC12 cells.

    abstract::This protocol represents a novel enzyme-luminescence method to detect dopamine sensitively and rapidly with high temporal resolution. In principle, dopamine is first oxidized with tyramine oxidase to produce H(2)O(2), and then the produced H(2)O(2) reacts with luminol to generate chemiluminescence in the presence of h...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2008.158

    authors: Shinohara H,Wang F,Hossain SM

    更新日期:2008-01-01 00:00:00

  • Genetically modified mouse models to help fight COVID-19.

    abstract::The research community is in a race to understand the molecular mechanisms of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection, to repurpose currently available antiviral drugs and to develop new therapies and vaccines against coronavirus disease 2019 (COVID-19). One major challenge in achieving ...

    journal_title:Nature protocols

    pub_type: 杂志文章,评审

    doi:10.1038/s41596-020-00403-2

    authors: Gurumurthy CB,Quadros RM,Richardson GP,Poluektova LY,Mansour SL,Ohtsuka M

    更新日期:2020-12-01 00:00:00

  • Enhanced delivery of cell-penetrating peptide-peptide nucleic acid conjugates by endosomal disruption.

    abstract::Improvement of cellular uptake and cellular localization is still one of the main obstacles to the development of antisense-antigene therapeutics, including peptide nucleic acid (PNA). Cell-penetrating peptides (CPPs) such as Tat peptide and polyarginine have been widely used to improve the cellular uptake of PNA and ...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2006.92

    authors: Shiraishi T,Nielsen PE

    更新日期:2006-01-01 00:00:00

  • Analysis of mutational spectra by denaturing capillary electrophoresis.

    abstract::The point mutational spectrum over nearly any 75- to 250-bp DNA sequence isolated from cells, tissues or large populations may be discovered using denaturing capillary electrophoresis (DCE). A modification of the standard DCE method that uses cycling temperature (e.g., +/-5 degrees C), CyDCE, permits optimal resolutio...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2008.79

    authors: Ekstrøm PO,Khrapko K,Li-Sucholeiki XC,Hunter IW,Thilly WG

    更新日期:2008-01-01 00:00:00

  • Miniaturized parallel screens to identify chromatographic steps required for recombinant protein purification.

    abstract::Methods development in chromatography is a time-consuming, trial-and-error process that requires laborious experimentation. We describe a high-throughput screening (HTS) protocol for the rapid identification of chromatographic steps for protein purification from cell-free expression broths. Broths containing the prote...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2009.149

    authors: Rege K,Heng M

    更新日期:2010-03-01 00:00:00

  • Generation of human antral and fundic gastric organoids from pluripotent stem cells.

    abstract::The human stomach contains two primary domains: the corpus, which contains the fundic epithelium, and the antrum. Each of these domains has distinct cell types and functions, and therefore each presents with unique disease pathologies. Here, we detail two protocols to differentiate human pluripotent stem cells (hPSCs)...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/s41596-018-0080-z

    authors: Broda TR,McCracken KW,Wells JM

    更新日期:2019-01-01 00:00:00

  • Polyethylene glycol-based bidentate ligands to enhance quantum dot and gold nanoparticle stability in biological media.

    abstract::We describe a simple and versatile scheme to prepare a series of poly(ethylene glycol)-based bidentate ligands that permit strong interactions with colloidal semiconductor nanocrystals (quantum dots, QDs) and gold nanoparticles (AuNPs) alike and promote their dispersion in aqueous solutions. These ligands are synthesi...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2008.243

    authors: Mei BC,Susumu K,Medintz IL,Mattoussi H

    更新日期:2009-01-01 00:00:00

  • Genome-wide analysis of replication timing by next-generation sequencing with E/L Repli-seq.

    abstract::This protocol is an extension to: Nat. Protoc. 6, 870-895 (2014); doi:10.1038/nprot.2011.328; published online 02 June 2011Cycling cells duplicate their DNA content during S phase, following a defined program called replication timing (RT). Early- and late-replicating regions differ in terms of mutation rates, transcr...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2017.148

    authors: Marchal C,Sasaki T,Vera D,Wilson K,Sima J,Rivera-Mulia JC,Trevilla-García C,Nogues C,Nafie E,Gilbert DM

    更新日期:2018-05-01 00:00:00

  • Spatial transcriptomic analysis of cryosectioned tissue samples with Geo-seq.

    abstract::Conventional gene expression studies analyze multiple cells simultaneously or single cells, for which the exact in vivo or in situ position is unknown. Although cellular heterogeneity can be discerned when analyzing single cells, any spatially defined attributes that underpin the heterogeneous nature of the cells cann...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2017.003

    authors: Chen J,Suo S,Tam PP,Han JJ,Peng G,Jing N

    更新日期:2017-03-01 00:00:00

  • Using hyperLOPIT to perform high-resolution mapping of the spatial proteome.

    abstract::The organization of eukaryotic cells into distinct subcompartments is vital for all functional processes, and aberrant protein localization is a hallmark of many diseases. Microscopy methods, although powerful, are usually low-throughput and dependent on the availability of fluorescent fusion proteins or highly specif...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2017.026

    authors: Mulvey CM,Breckels LM,Geladaki A,Britovšek NK,Nightingale DJH,Christoforou A,Elzek M,Deery MJ,Gatto L,Lilley KS

    更新日期:2017-06-01 00:00:00

  • Cryosectioning and immunolabeling.

    abstract::In this protocol, we describe cryoimmunolabeling methods for the subcellular localization of proteins and certain lipids. The methods start with chemical fixation of cells and tissue in formaldehyde (FA) and/or glutaraldehyde (GA), sometimes supplemented with acrolein. Cell and tissue blocks are then immersed in 2.3 M...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2007.365

    authors: Slot JW,Geuze HJ

    更新日期:2007-01-01 00:00:00

  • Fast, efficient and reproducible genetic transformation of Phaseolus spp. by Agrobacterium rhizogenes.

    abstract::This transformation procedure generates, with high efficiency (70-90%), hairy roots in cultivars, landraces and accessions of Phaseolus vulgaris (common bean) and other Phaseolus spp. Hairy roots rapidly develop after wounding young plantlets with Agrobacterium rhizogenes, at the cotyledon node, and keeping the plants...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2007.259

    authors: Estrada-Navarrete G,Alvarado-Affantranger X,Olivares JE,Guillén G,Díaz-Camino C,Campos F,Quinto C,Gresshoff PM,Sanchez F

    更新日期:2007-01-01 00:00:00

  • Genome editing comes of age.

    abstract::Genome editing harnesses programmable nucleases to cut and paste genetic information in a targeted manner in living cells and organisms. Here, I review the development of programmable nucleases, including zinc finger nucleases (ZFNs), TAL (transcription-activator-like) effector nucleases (TALENs) and CRISPR (cluster o...

    journal_title:Nature protocols

    pub_type: 杂志文章,评审

    doi:10.1038/nprot.2016.104

    authors: Kim JS

    更新日期:2016-09-01 00:00:00

  • Generation of cortical neurons from mouse embryonic stem cells.

    abstract::Embryonic stem cells (ESCs) constitute a tool of great potential in neurobiology, enabling the directed differentiation of specific neural cell types. We have shown recently that neurons of the cerebral cortex can be generated from mouse ESCs cultured in a chemically defined medium that contains no morphogen, but in t...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2009.157

    authors: Gaspard N,Bouschet T,Herpoel A,Naeije G,van den Ameele J,Vanderhaeghen P

    更新日期:2009-01-01 00:00:00

  • Visualization of protein interactions in living Caenorhabditis elegans using bimolecular fluorescence complementation analysis.

    abstract::The bimolecular fluorescence complementation (BiFC) assay is a powerful tool for visualizing and identifying protein interactions in living cells. This assay is based on the principle of protein-fragment complementation, using two nonfluorescent fragments derived from fluorescent proteins. When two fragments are broug...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2008.16

    authors: Shyu YJ,Hiatt SM,Duren HM,Ellis RE,Kerppola TK,Hu CD

    更新日期:2008-01-01 00:00:00

  • Comprehensive structural glycomic characterization of the glycocalyxes of cells and tissues.

    abstract::The glycocalyx comprises glycosylated proteins and lipids and fcorms the outermost layer of cells. It is involved in fundamental inter- and intracellular processes, including non-self-cell and self-cell recognition, cell signaling, cellular structure maintenance, and immune protection. Characterization of the glycocal...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/s41596-020-0350-4

    authors: Li Q,Xie Y,Wong M,Barboza M,Lebrilla CB

    更新日期:2020-08-01 00:00:00

  • MicroRNA detection by northern blotting using locked nucleic acid probes.

    abstract::MicroRNAs (miRNAs) are short, about 21 nucleotides in length, noncoding, regulatory RNA molecules representing a new layer in post-transcriptional regulation of gene expression. Intensive miRNA research has necessitated the development of effective miRNA detection methods such as northern analyses, quantitative real-t...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2007.528

    authors: Várallyay E,Burgyán J,Havelda Z

    更新日期:2008-01-01 00:00:00

  • Direct detection of small RNAs using splinted ligation.

    abstract::This protocol describes a method for direct labeling and detection of small RNAs present in total RNA by splinted ligation. The assay uses a small RNA-specific bridge oligonucleotide to form base pairs with the small RNA and a 5'-end-radiolabeled ligation oligonucleotide. The captured small RNA is directly labeled by ...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2007.530

    authors: Maroney PA,Chamnongpol S,Souret F,Nilsen TW

    更新日期:2008-01-01 00:00:00

  • Template-based protein structure modeling using the RaptorX web server.

    abstract::A key challenge of modern biology is to uncover the functional role of the protein entities that compose cellular proteomes. To this end, the availability of reliable three-dimensional atomic models of proteins is often crucial. This protocol presents a community-wide web-based method using RaptorX (http://raptorx.uch...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2012.085

    authors: Källberg M,Wang H,Wang S,Peng J,Wang Z,Lu H,Xu J

    更新日期:2012-07-19 00:00:00

  • Fluorometric measurement of nitrite/nitrate by 2,3-diaminonaphthalene.

    abstract::We describe a step-by-step protocol for measuring the stable products of the nitric oxide (NO) pathway: nitrite, nitrite plus nitrate and nitrate. This described protocol is easy to apply and is about 50 times more sensitive than the commonly used Griess reaction or commercially available assay kits based on the Gries...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2006.341

    authors: Nussler AK,Glanemann M,Schirmeier A,Liu L,Nüssler NC

    更新日期:2006-01-01 00:00:00

  • Development of a highly reproducible three-dimensional organotypic model of the oral mucosa.

    abstract::In this report we describe the development of a standardized three-dimensional (3D) system of the human oral mucosa based on an immortalized human oral keratinocyte cell line (OKF6/TERT-2). The procedure takes approximately 2-3 weeks to complete and includes three main stages: preparation of collagen-embedded fibrobla...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2006.323

    authors: Dongari-Bagtzoglou A,Kashleva H

    更新日期:2006-01-01 00:00:00

  • Synthesis of enantiomerically enriched (R)-5-tert-butylazepan-2-one using a hydroxyalkyl azide mediated ring-expansion reaction.

    abstract::A procedure for the conversion of a symmetrical ketone to an enantiomerically pure lactam is described. The technique described here involves a ring-expansion reaction of a 4-substituted cyclohexanone accomplished with a chiral 1,3-azidopropanol derivative. The procedure entails first a one-step preparation of (R)-1-p...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2007.518

    authors: Ribelin TP,Aubé J

    更新日期:2008-01-01 00:00:00

  • Six alternative proteases for mass spectrometry-based proteomics beyond trypsin.

    abstract::Protein digestion using a dedicated protease represents a key element in a typical mass spectrometry (MS)-based shotgun proteomics experiment. Up to now, digestion has been predominantly performed with trypsin, mainly because of its high specificity, widespread availability and ease of use. Lately, it has become appar...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2016.057

    authors: Giansanti P,Tsiatsiani L,Low TY,Heck AJ

    更新日期:2016-05-01 00:00:00

  • Study of in vivo catheter biofilm infections using pediatric central venous catheter implanted in rat.

    abstract::Venous access catheters used in clinics are prone to biofilm contamination, contributing to chronic and nosocomial infections. Although several animal models for studying device-associated biofilms were previously described, only a few detailed protocols are currently available. Here we provide a protocol using totall...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2016.033

    authors: Chauhan A,Ghigo JM,Beloin C

    更新日期:2016-03-01 00:00:00

  • One-pot chemical synthesis of small ubiquitin-like modifier protein-peptide conjugates using bis(2-sulfanylethyl)amido peptide latent thioester surrogates.

    abstract::Small ubiquitin-like modifier (SUMO) post-translational modification (PTM) of proteins has a crucial role in the regulation of important cellular processes. This protocol describes the chemical synthesis of functional SUMO-peptide conjugates. The two crucial stages of this protocol are the solid-phase synthesis of pep...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2015.013

    authors: Boll E,Drobecq H,Ollivier N,Blanpain A,Raibaut L,Desmet R,Vicogne J,Melnyk O

    更新日期:2015-02-01 00:00:00

  • Frozen competent yeast cells that can be transformed with high efficiency using the LiAc/SS carrier DNA/PEG method.

    abstract::Here we describe a protocol for the production of frozen competent yeast cells that can be transformed with high efficiency using the lithium acetate/single-stranded carrier DNA/PEG method. This protocol allows the production of highly competent yeast cells that can be frozen and used at a later date and is especially...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2007.17

    authors: Gietz RD,Schiestl RH

    更新日期:2007-01-01 00:00:00

  • A comprehensive pipeline for translational top-down proteomics from a single blood draw.

    abstract::Top-down proteomics (TDP) by mass spectrometry (MS) is a technique by which intact proteins are analyzed. It has become increasingly popDesalting and concentrating GELFrEEular in translational research because of the value of characterizing distinct proteoforms of intact proteins. Compared to bottom-up proteomics (BUP...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/s41596-018-0085-7

    authors: Toby TK,Fornelli L,Srzentić K,DeHart CJ,Levitsky J,Friedewald J,Kelleher NL

    更新日期:2019-01-01 00:00:00

  • In situ hybridization technique for mRNA detection in whole mount Arabidopsis samples.

    abstract::High throughput microarray transcription analyses provide us with the expression profiles for large amounts of plant genes. However, their tissue and cellular resolution is limited. Thus, for detailed functional analysis, it is still necessary to examine the expression pattern of selected candidate genes at a cellular...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2006.333

    authors: Hejátko J,Blilou I,Brewer PB,Friml J,Scheres B,Benková E

    更新日期:2006-01-01 00:00:00

  • Synthesis of an ultrasensitive BODIPY-derived fluorescent probe for detecting HOCl in live cells.

    abstract::Hypochlorous acid (HOCl) is a critical member of the reactive oxygen species (ROS) produced by immune cells to fight infections. On the other hand, HOCl in homeostasis causes oxidative damage to biomolecules and is linked to many diseases, including inflammatory, neurodegenerative, and cardiovascular diseases. Herein,...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/s41596-018-0041-6

    authors: Zhu H,Zhang Z,Long S,Du J,Fan J,Peng X

    更新日期:2018-10-01 00:00:00

  • Analysis of protein glycosylation by mass spectrometry.

    abstract::We present a detailed protocol for the structural analysis of protein-linked glycans. In this approach, appropriate for glycomics studies, N-linked glycans are released using peptide N-glycosidase F and O-linked glycans are released by reductive alkaline beta-elimination. Using strategies based on mass spectrometry (m...

    journal_title:Nature protocols

    pub_type: 杂志文章

    doi:10.1038/nprot.2007.227

    authors: Morelle W,Michalski JC

    更新日期:2007-01-01 00:00:00