New microsatellite markers for assessment of genetic diversity in date palm (Phoenix dactylifera L.).

Abstract:

:New primer pairs of genomic DNA microsatellite markers were tested to assess the genetic diversity of eleven date palm genotypes. The results indicated that out of thirty, only seven primers (23.3%) failed to amplify the expected PCR fragments, while thirteen primers (43.3%) amplified monomorphic banding patterns and the remaining ten primers (33.4%) generated polymorphic banding patterns. A total of 77 alleles have been observed with a mean of 7.7 alleles per locus. The average of gene diversity was 0.80 ranging from 0.6 (in marker DP168) to 0.9 (in two markers DP157 and DP175). These new co-dominant markers will be a starting point for researchers making use of the markers for genetic mapping and diversity analysis of date palm.

journal_name

3 Biotech

journal_title

3 Biotech

authors

Elmeer K,Sarwath H,Malek J,Baum M,Hamwieh A

doi

10.1007/s13205-011-0010-z

subject

Has Abstract

pub_date

2011-09-01 00:00:00

pages

91-97

issue

2

eissn

2190-572X

issn

2190-5738

pii

10

journal_volume

1

pub_type

杂志文章
  • Polymorphisms in 5' proximal regulating region of THRSP gene are associated with fat production in pigs.

    abstract::Chinese and imported pig breeds differ in fat production potential, which is associated with the polymorphisms in the 5' proximal regulating region (5'PRR) of thyroid hormone responsive gene (THRSP). In three Chinese breeds (Dingyuan, CDY; Wannanhua, CWH; and Jixi, CJX) and one introduced breed (Yorkshire, YKS), three...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-020-02266-6

    authors: Wang X,Cheng J,Qin W,Chen H,Chen G,Shang X,Zhang M,Balsai N,Chen H

    更新日期:2020-06-01 00:00:00

  • Isolation and biological evaluation of N-(4-aminocyclooctyl)-3, 5-dinitrobenzamide, a new semisynthetic derivative from the Mangrove-associated actinomycete Pseudonocardia endophytica VUK-10.

    abstract::The present study was aimed to isolate novel bioactive compounds from actinomycetes species isolated from mangrove habitats. With this connection, Pseudonocardia endophytica (VUK-10) was isolated using dilution plate technique and was examined for its secondary metabolite profiling. After successive purification and s...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-016-0472-0

    authors: Mangamuri UK,Vijayalakshmi M,Poda S,Manavathi B,Chitturi B,Yenamandra V

    更新日期:2016-12-01 00:00:00

  • Molecular characterization and amplified ribosomal DNA restriction analysis of entomopathogenic bacteria associated with Rhabditis (Oscheius) spp.

    abstract::Bacterial strains associated with entomopathogenic nematodes (EPNs) Rhabditis (Oscheius) spp. were isolated from infected cadavers of Galleria mellonella. The obtained 18 isolates were subdivided into nine phylogenetically different genera based on comparative sequence analysis of their 16S rRNA genes. The isolates we...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-015-0326-1

    authors: Sangeetha BG,Jayaprakas CA,Siji JV,Rajitha M,Shyni B,Mohandas C

    更新日期:2016-06-01 00:00:00

  • Transcripts of pectin-degrading enzymes and isolation of complete cDNA sequence of a pectate lyase gene induced by coffee white stem borer (Xylotrechus quadripes) in the bark tissue of Coffea canephora (robusta coffee).

    abstract::Of the two commercially cultivated coffee (Coffea) species, C. arabica (arabica) is highly susceptible and C. canephora (robusta) is highly resistant to the insect pest Xylotrechus quadripes (Coleoptera: Cerambycidae), commonly known as coffee white stem borer (CWSB). We constructed a forward-subtracted cDNA library b...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-017-0715-8

    authors: Bharathi K,Santosh P,Sreenath HL

    更新日期:2017-05-01 00:00:00

  • Bacterial lactase genes diversity in intestinal mucosa of mice with dysbacterial diarrhea induced by antibiotics.

    abstract::The current study aimed at exploring the diversity of bacterial lactase genes in the intestinal mucosa of mice with dysbacterial diarrhea induced by antibiotics and to provide experimental basis for antibiotics-induced diarrhea. Mice model of dysbacterial diarrhea was established by gastric perfusion with mixture of c...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-018-1191-5

    authors: Long C,Liu Y,He L,Tan Q,Yu Z,Xiao N,Tan Z

    更新日期:2018-03-01 00:00:00

  • Identification and analysis of RNA editing sites in chloroplast transcripts of kenaf (Hibiscus cannabinus L.).

    abstract::RNA editing is one of the post-transcriptional modification processes and can lead to changes in sequencing and functioning of corresponding proteins and genetic information. To reveal the composition and characteristic of RNA editing of kenaf chloroplast genome, the RNA editing sites in kenaf chloroplast were predict...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-019-1893-3

    authors: Tang D,Wei F,Kashif MH,Munsif F,Zhou R

    更新日期:2019-10-01 00:00:00

  • Isolation and characterization of bacterial endophytes of Curcuma longa L.

    abstract::Fourteen endophytic bacterial isolates were isolated from the rhizome of Curcuma longa L. were characterized on the basis of morphology, biochemical characteristics and 16S rRNA gene sequence analysis. The isolates were identified to six strains namely Bacillus cereus (ECL1), Bacillus thuringiensis (ECL2), Bacillus sp...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-016-0393-y

    authors: Kumar A,Singh R,Yadav A,Giri DD,Singh PK,Pandey KD

    更新日期:2016-06-01 00:00:00

  • Enhanced saccharification of rice straw using combined ultra-high pressure and ionic liquid microemulsion pretreatments.

    abstract::Energy efficiency ratio is significant in completely estimating lignocellulosic biomass pretreatment. In this work, rice straw (RS) was pretreated by ultra-high pressure (UHP), ionic liquid microemulsion (ILM), and a combination of UHP and ILM (ILM + UHP) at mild temperature. The chemical composition, crystalline stru...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-018-1216-0

    authors: Gao J,Zheng C,Tan T,Liu S,Ji H

    更新日期:2018-04-01 00:00:00

  • Disease management of tomato through PGPB: current trends and future perspective.

    abstract::Tomato is the world's second most cultivated vegetable. During cultivation or post-harvest storage, it is susceptible to more than 200 diseases caused by an array of pathogenic fungi, nematodes, bacteria, and viruses. Although wide range of chemical pesticides are currently available to manage plant diseases, continuo...

    journal_title:3 Biotech

    pub_type: 杂志文章,评审

    doi:10.1007/s13205-017-0896-1

    authors: Singh VK,Singh AK,Kumar A

    更新日期:2017-08-01 00:00:00

  • Draft genome sequence of Actinocorallia populi A251T, an actinomycetes producing polyketides and nonribosomal polypeptides.

    abstract::In this work, we present the draft genome sequence of Actinocorallia populi A251T consisting of 8,253,402 bp with a G + C content of 71.5 mol%. The genome sequence includes 3 5S rRNA genes, 54 tRNA genes, 28 snRNA genes and 19 CRISPRs in 26 contigs. Using the Rapid Annotation using Subsystem Technology, a total of 776...

    journal_title:3 Biotech

    pub_type:

    doi:10.1007/s13205-020-2070-4

    authors: Li X,Wang Z,Gan L,Tian Y

    更新日期:2020-02-01 00:00:00

  • Dark fermentation effluent as substrate for hydrogen production from Rhodobacter capsulatus highlighting the performance of different fermentation systems.

    abstract::Hydrogen production by biological route is a potentially sustainable alternative. Nowadays, energy production from sustainable sources has become urgent for several countries as well as for international policies. In this perspective, hydrogen has gained substantial global attention as clean, sustainable, and versatil...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-019-1676-x

    authors: Silva FTM,Bessa LP,Vieira LM,Moreira FS,de Souza Ferreira J,Batista FRX,Cardoso VL

    更新日期:2019-04-01 00:00:00

  • Molecular mechanism, diagnosis, and potential treatment for novel coronavirus (COVID-19): a current literature review and perspective.

    abstract::Novel coronavirus disease 2019 (COVID-19) is a positive-sense single-stranded RNA virus which belongs to the Coronaviridae family. COVID-19 outbreak became evident after the severe acute respiratory syndrome coronavirus and the Middle East respiratory syndrome coronavirus in the twenty-first century as the start of th...

    journal_title:3 Biotech

    pub_type: 杂志文章,评审

    doi:10.1007/s13205-021-02657-3

    authors: Ratre YK,Kahar N,Bhaskar LVKS,Bhattacharya A,Verma HK

    更新日期:2021-02-01 00:00:00

  • Involvement of exogenous polyamines enhances regeneration and Agrobacterium-mediated genetic transformation in half-seeds of soybean.

    abstract::The present work demonstrates the participation of polyamines (PAs) to improve direct regeneration and Agrobacterium-mediated transformation in soybean half-seeds. The inclusion of PAs to culture medium along with optimal plant growth regulators (PGRs) enhanced shoot induction [98.3 %; 4.44 µM N6-benzyladenine (BA) an...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-016-0448-0

    authors: Arun M,Chinnathambi A,Subramanyam K,Karthik S,Sivanandhan G,Theboral J,Alharbi SA,Kim CK,Ganapathi A

    更新日期:2016-12-01 00:00:00

  • Isolation and characterization of plant and human pathogenic bacteria from green pepper (Capsicum annum L.) in Riyadh, Saudi Arabia.

    abstract::Forty-three bacterial isolates in five genera were recovered from naturally infected green pepper fruits (38 samples) showing dark brown, irregular-shaped splotches. The pathogenicity test was performed on healthy green pepper fruits and red colonies were from inoculated fruits showing the same symptoms and the infect...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-013-0136-2

    authors: Al-Mijalli SH

    更新日期:2014-08-01 00:00:00

  • Bacopaside N1 biosynthetic potential of endophytic Aspergillus sp. BmF 16 isolated from Bacopa monnieri.

    abstract::Chemically unique environment of endophytes makes them to have various adaptive mechanisms for survival. One of such mechanisms involves the production of pharmacologically significant plant-specific metabolites. In the present study, 26 endophytic fungi were isolated from stem of Bacopa monnieri (L.) Wettst. plants. ...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-017-0788-4

    authors: Jasim B,Daya PS,Sreelakshmi KS,Sachidanandan P,Aswani R,Jyothis M,Radhakrishnan EK

    更新日期:2017-07-01 00:00:00

  • Genome of a known but distinct begomovirus associated with a novel satellite molecule infecting a new host bitter gourd (Momordica charantia).

    abstract::Coccinia mosaic Virdhunagar virus (KY860899), Tomato leaf curl New Delhi virus (KY860898) and Tomato leaf curl Virdhunagar alphasatellite (KY848691) were found to be associated with leaf curl disease in Momordica charantia (bitter gourd). The complete nucleotide sequence of Coccinia mosaic Virdhunagar virus showed 82%...

    journal_title:3 Biotech

    pub_type:

    doi:10.1007/s13205-019-1775-8

    authors: Muthupandi K,Marwal A,Tennyson J

    更新日期:2019-06-01 00:00:00

  • Profiling of red pigment produced by Streptomyces sp. JAR6 and its bioactivity.

    abstract::Actinomycetes strain was isolated from leaf litter soil sample and was identified as Streptomyces sp. by conventional and molecular approaches. The biologically active compound responsible for antimicrobial and anticancer activity of the strain JAR6 was elucidated by solid state fermentation followed by subsequent chr...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-017-1044-7

    authors: Abraham J,Chauhan R

    更新日期:2018-01-01 00:00:00

  • Molecular characterization and an 80-bp indel polymorphism within the prolactin receptor (PRLR) gene and its associations with chicken growth and carcass traits.

    abstract::The prolactin receptor (PRLR), a type I cytokine receptor, must bind prolactin (PRL) to act on target cells to mediate various physiological functions, including reproduction and lactation. This study identified an 80-bp insertion/deletion (indel) polymorphism in the 3'-untranslated region (3'-UTR) of the chicken PRLR...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-019-1827-0

    authors: Liang K,Wang X,Tian X,Geng R,Li W,Jing Z,Han R,Tian Y,Liu X,Kang X,Li Z

    更新日期:2019-08-01 00:00:00

  • Elimination and detection of viruses in meristem-derived plantlets of sweetpotato as a low-cost option toward commercialization.

    abstract::Viral diseases affecting sweetpotato are the most devastating and cause up to 98 % yield loss. In this paper, we report, meristem culture, graft transmission and virus indexing for management of viral pathogens in seven elite sweetpotato cultivars. Plantlets were developed in vitro from the apical meristematic dome wi...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-012-0080-6

    authors: Alam I,Sharmin SA,Naher MK,Alam MJ,Anisuzzaman M,Alam MF

    更新日期:2013-04-01 00:00:00

  • Chikungunya virus: genomic microevolution in Eastern India and its in-silico epitope prediction.

    abstract::This is the first study reporting whole genome sequences of two CHIKV strains (KJ679577 and KJ679578) isolated from Eastern Indian patients sera during 2010-2011 outbreak, both of which were of ECSA genotype, but from different subgroups: Indian Ocean outbreak and ECSA subtypes. Furthermore, viral sequences were analy...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-018-1339-3

    authors: Dutta SK,Bhattacharya T,Tripathi A

    更新日期:2018-07-01 00:00:00

  • Single and combined effects of acetic acid, furfural, and sugars on the growth of the pentose-fermenting yeast Meyerozyma guilliermondii.

    abstract::The tolerance of the pentose-fermenting yeast Meyerozyma guilliermondii to the inhibitors released after the biomass hydrolysis, such as acetic acid and furfural, was surveyed. We first verified the effects of acetic acid and cell concentrations and initial pH on the growth of a M. guilliermondii strain in a semi-synt...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-018-1143-0

    authors: Perna MDSC,Bastos RG,Ceccato-Antonini SR

    更新日期:2018-02-01 00:00:00

  • ACC deaminase-producing rhizosphere competent Bacillus spp. mitigate salt stress and promote Zea mays growth by modulating ethylene metabolism.

    abstract::Plant growth-promoting rhizobacteria (PGPR) are known for growth promotion and mitigating environmental stresses. Here, we examined the propitiousness of three indigenous salt-tolerant PGPR, i.e., Bacillus subtilis (NBRI 28B), B. subtilis (NBRI 33 N), and B. safensis (NBRI 12 M) for plant growth promotion and salt str...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-020-2104-y

    authors: Misra S,Chauhan PS

    更新日期:2020-03-01 00:00:00

  • Hot springs of Indian Himalayas: potential sources of microbial diversity and thermostable hydrolytic enzymes.

    abstract::Microbial communities in hot springs at high elevations have been extensively studied worldwide. In this sense, the Indian Himalaya regions is valuable ecosystems for providing both the extreme 'cold' and 'hot' sites for exploring microbial diversity. In the present study, a total of 140 thermophilic bacteria were iso...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-017-0762-1

    authors: Sahay H,Yadav AN,Singh AK,Singh S,Kaushik R,Saxena AK

    更新日期:2017-06-01 00:00:00

  • Molecular characterization of teosinte branched1 gene governing branching architecture in cultivated maize and wild relatives.

    abstract::We sequenced the entire tb1 gene in six maize inbreds and its wild relatives (parviglumis, mexicana, perennis and luxurians) to characterize it at molecular level. Hopscotch and Tourist transposable elements were observed in the upstream of tb1 in all maize inbreds, while they were absent in wild relatives. In maize, ...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-020-2052-6

    authors: Prakash NR,Chhabra R,Zunjare RU,Muthusamy V,Hossain F

    更新日期:2020-02-01 00:00:00

  • Plant stem cells and their applications: special emphasis on their marketed products.

    abstract::Stem cells are becoming increasingly popular in public lexicon owing to their prospective applications in the biomedical and therapeutic domains. Extensive research has found various independent stem cell systems fulfilling specific needs of plant development. Plant stem cells are innately undifferentiated cells prese...

    journal_title:3 Biotech

    pub_type: 杂志文章,评审

    doi:10.1007/s13205-020-02247-9

    authors: Aggarwal S,Sardana C,Ozturk M,Sarwat M

    更新日期:2020-07-01 00:00:00

  • Isolation and in silico characterization of novel esterase gene with β-lactamase fold isolated from metagenome of north western Himalayas.

    abstract::An esterase-producing clone Aph2 was isolated from the Apharwat soil metagenomic library, a mountain peak in NW Himalayas. ORF 2 (Est Ac) of clone Aph2 corresponds to 271 aa protein and showed 26 % sequence similarity to carboxylesterase gene of Synechococcus sp. JA-2-3B. Est Ac contains nucleophilic Ser in S68-X-X-K7...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-014-0254-5

    authors: Sudan AK,Vakhlu J

    更新日期:2015-08-01 00:00:00

  • A statistical approach for the production of thermostable and alklophilic alpha-amylase from Bacillus amyloliquefaciens KCP2 under solid-state fermentation.

    abstract::The bacterial strain producing thermostable, alklophilic alpha-amylase was identified as Bacillus amyloliquefaciens KCP2 using 16S rDNA gene sequencing data (NCBI Accession No: KF112071). Medium components were optimized through the statistical approach for the synthesis of alpha-amylase by the organism under solid-st...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-014-0213-1

    authors: Prajapati VS,Trivedi UB,Patel KC

    更新日期:2015-04-01 00:00:00

  • Comparative adsorption of amylase, protease and lipase on ZnFe2O4: kinetics, isothermal and thermodynamics studies.

    abstract::The role of enzyme engineering in biotechnology, biological and pharmaceutical process cannot be over emphasized. This study compared the adsorption of digestives enzymes; amylase, protease and lipase on to Zn-ferrite (ZnFe2O4). The metal ferrite was synthesized via a sol-gel technique and characterized with scanning ...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-017-0859-6

    authors: Adeogun AI,Kareeem SO,Adebayo OS,Balogun SA

    更新日期:2017-07-01 00:00:00

  • Degradation of p-chlorocresol by facultative Thauera sp. strain DO.

    abstract::In this work, Thauera sp. DO isolated from sludge and sediment utilized p-chlorocresol and some related compounds as the sole carbon and energy sources under both aerobic and anaerobic conditions. The pathways for p-chlorocresol in the isolate under each condition were different. Under the aerobic condition, p-chloroc...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-019-2025-9

    authors: Ha DD,Nguyen OT

    更新日期:2020-02-01 00:00:00

  • Chemical constituents, antioxidant and cytotoxicity properties of Leonotis leonurus used in the folklore management of neurological disorders in the Eastern Cape, South Africa.

    abstract::In the present study, we evaluated the phytochemical compounds and antioxidant properties of chloroform, ethanol and acetone extracts for leaves and flowers of Leonutusleonurus (L.leonurus) alongside with their cytotoxic effects on human cervical carcinoma (HeLa) cell lines. The phytochemical compounds present in the ...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-020-2126-5

    authors: Tonisi S,Okaiyeto K,Hoppe H,Mabinya LV,Nwodo UU,Okoh AI

    更新日期:2020-03-01 00:00:00