A network of genes antagonistic to the LIN-35 retinoblastoma protein of Caenorhabditis elegans.

Abstract:

:The Caenorhabditis elegans pRb ortholog, LIN-35, functions in a wide range of cellular and developmental processes. This includes a role of LIN-35 in nutrient utilization by the intestine, which it carries out redundantly with SLR-2, a zinc-finger protein. This and other redundant functions of LIN-35 were identified in genetic screens for mutations that display synthetic phenotypes in conjunction with loss of lin-35. To explore the intestinal role of LIN-35, we conducted a genome-wide RNA-interference-feeding screen for suppressors of lin-35; slr-2 early larval arrest. Of the 26 suppressors identified, 17 fall into three functional classes: (1) ribosome biogenesis genes, (2) mitochondrial prohibitins, and (3) chromatin regulators. Further characterization indicates that different categories of suppressors act through distinct molecular mechanisms. We also tested lin-35; slr-2 suppressors, as well as suppressors of the synthetic multivulval phenotype, to determine the spectrum of lin-35-synthetic phenotypes that could be suppressed following inhibition of these genes. We identified 19 genes, most of which are evolutionarily conserved, that can suppress multiple unrelated lin-35-synthetic phenotypes. Our study reveals a network of genes broadly antagonistic to LIN-35 as well as genes specific to the role of LIN-35 in intestinal and vulval development. Suppressors of multiple lin-35 phenotypes may be candidate targets for anticancer therapies. Moreover, screening for suppressors of phenotypically distinct synthetic interactions, which share a common altered gene, may prove to be a novel and effective approach for identifying genes whose activities are most directly relevant to the core functions of the shared gene.

journal_name

Genetics

journal_title

Genetics

authors

Polley SR,Fay DS

doi

10.1534/genetics.112.140152

subject

Has Abstract

pub_date

2012-08-01 00:00:00

pages

1367-80

issue

4

eissn

0016-6731

issn

1943-2631

pii

genetics.112.140152

journal_volume

191

pub_type

杂志文章

相关文献

GENETICS文献大全
  • Analysis of dominant mutations affecting muscle excitation in Caenorhabditis elegans.

    abstract::We examined mutations that disrupt muscle activation in Caenorhabditis elegans. Fifteen of 17 of these genes were identified previously and we describe new mutations in three of them. We also describe mutations in two new genes, exp-3 and exp-4. We assessed the degree of defect in pharyngeal, body-wall, egg-laying, an...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Reiner DJ,Weinshenker D,Thomas JH

    更新日期:1995-11-01 00:00:00

  • Modeling the zebrafish segmentation clock's gene regulatory network constrained by expression data suggests evolutionary transitions between oscillating and nonoscillating transcription.

    abstract::During segmentation of vertebrate embryos, somites form in accordance with a periodic pattern established by the segmentation clock. In the zebrafish (Danio rerio), the segmentation clock includes six hairy/enhancer of split-related (her/hes) genes, five of which oscillate due to negative autofeedback. The nonoscillat...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.114.163642

    authors: Schwendinger-Schreck J,Kang Y,Holley SA

    更新日期:2014-06-01 00:00:00

  • Recombination-Driven Genome Evolution and Stability of Bacterial Species.

    abstract::While bacteria divide clonally, horizontal gene transfer followed by homologous recombination is now recognized as an important contributor to their evolution. However, the details of how the competition between clonality and recombination shapes genome diversity remains poorly understood. Using a computational model,...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.117.300061

    authors: Dixit PD,Pang TY,Maslov S

    更新日期:2017-09-01 00:00:00

  • A genetic analysis of the 63E-64A genomic region of Drosophila melanogaster: identification of mutations in a replication factor C subunit.

    abstract::We have performed an F2 genetic screen to identify lethal mutations within the 63E-64A genomic region. We have isolated 122 mutations in 20 different complementation groups. Of these groups, 16 are represented by multiple alleles. We have also established that the Rop and Ras2 genes are located within the 63E-64A geno...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Harrison SD,Solomon N,Rubin GM

    更新日期:1995-04-01 00:00:00

  • Sequence diversity, reproductive isolation and species concepts in Saccharomyces.

    abstract::Using the biological species definition, yeasts of the genus Saccharomyces sensu stricto comprise six species and one natural hybrid. Previous work has shown that reproductive isolation between the species is due primarily to sequence divergence acted upon by the mismatch repair system and not due to major gene differ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.106.062166

    authors: Liti G,Barton DB,Louis EJ

    更新日期:2006-10-01 00:00:00

  • Haldane's rule is linked to extraordinary sex ratios and sperm length in stalk-eyed flies.

    abstract::We use three allopatric populations of the stalk-eyed fly Teleopsis dalmanni from Southeast Asia to test two predictions made by the sex chromosome drive hypothesis for Haldane's rule. The first is that modifiers that suppress or enhance drive should evolve rapidly and independently in isolated populations. The second...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.114.167536

    authors: Wilkinson GS,Christianson SJ,Brand CL,Ru G,Shell W

    更新日期:2014-11-01 00:00:00

  • Interaction between the oxa1 and rmp1 genes modulates respiratory complex assembly and life span in Podospora anserina.

    abstract::A causal link between deficiency of the cytochrome respiratory pathway and life span was previously shown in the filamentous fungus Podospora anserina. To gain more insight into the relationship between mitochondrial function and life span, we have constructed a strain carrying a thermosensitive mutation of the gene o...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.104.033837

    authors: Sellem CH,Lemaire C,Lorin S,Dujardin G,Sainsard-Chanet A

    更新日期:2005-03-01 00:00:00

  • RNAi of met1 reduces DNA methylation and induces genome-specific changes in gene expression and centromeric small RNA accumulation in Arabidopsis allopolyploids.

    abstract::Changes in genome structure and gene expression have been documented in both resynthesized and natural allopolyploids that contain two or more divergent genomes. The underlying mechanisms for rapid and stochastic changes in gene expression are unknown. Arabidopsis suecica is a natural allotetraploid derived from the e...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.107.086272

    authors: Chen M,Ha M,Lackey E,Wang J,Chen ZJ

    更新日期:2008-04-01 00:00:00

  • High intake of dietary sugar enhances bisphenol A (BPA) disruption and reveals ribosome-mediated pathways of toxicity.

    abstract::Bisphenol A (BPA) is an organic compound to which human populations are ubiquitously exposed. Epidemiological data suggest BPA exposure might be associated with higher rates of diabetes and reproductive anomalies. Health concerns also include transgenerational consequences, but these mechanisms are crudely defined. Si...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.114.163170

    authors: Branco AT,Lemos B

    更新日期:2014-05-01 00:00:00

  • Centromere locations and associated chromosome rearrangements in Arabidopsis lyrata and A. thaliana.

    abstract::We analyzed linkage and chromosomal positions of genes in A. lyrata ssp. petraea that are located near the centromere (CEN) regions of A. thaliana, using at least two genes from the short and long arms of each chromosome. In our map, genes from all 10 A. thaliana chromosome arms are also tightly linked in A. lyrata. G...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.106.057182

    authors: Kawabe A,Hansson B,Hagenblad J,Forrest A,Charlesworth D

    更新日期:2006-07-01 00:00:00

  • Regulated Alternative Splicing of Drosophila Dscam2 Is Necessary for Attaining the Appropriate Number of Photoreceptor Synapses.

    abstract::How the brain makes trillions of synaptic connections using a genome of only 20,000 genes is a major question in modern neuroscience. Alternative splicing is one mechanism that can increase the number of proteins produced by each gene, but its role in regulating synapse formation is poorly understood. In Drosophila, p...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.117.300432

    authors: Kerwin SK,Li JSS,Noakes PG,Shin GJ,Millard SS

    更新日期:2018-02-01 00:00:00

  • Inferring coancestry in population samples in the presence of linkage disequilibrium.

    abstract::In both pedigree linkage studies and in population-based association studies there has been much interest in the use of modern dense genetic marker data to infer segments of gene identity by descent (ibd) among individuals not known to be related, to increase power and resolution in localizing genes affecting complex ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.111.137570

    authors: Brown MD,Glazner CG,Zheng C,Thompson EA

    更新日期:2012-04-01 00:00:00

  • Gag proteins of Drosophila telomeric retrotransposons: collaborative targeting to chromosome ends.

    abstract::TAHRE, the least abundant of the three retrotransposons forming telomeres in Drosophila melanogaster, has high sequence similarity to the gag gene and untranslated regions of HeT-A, the most abundant telomere-specific retrotransposon. Despite TAHRE's apparent evolutionary relationship to HeT-A, we find TAHRE Gag canno...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.109.109744

    authors: Fuller AM,Cook EG,Kelley KJ,Pardue ML

    更新日期:2010-03-01 00:00:00

  • Euploid derivatives of duplications from a translocation in neurospora.

    abstract::Nontandem terminal chromosome duplications derived from N. crassa translocation T(I-->VI)NM103 give rise mitotically to some daughter nuclei which have become euploid by loss of one or the other of the two duplicated segments. Loss of the segment in normal sequence occurs as often as loss of the translocated segment. ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Turner BC

    更新日期:1977-03-01 00:00:00

  • Distributive disjunction of authentic chromosomes in Saccharomyces cerevisiae.

    abstract::Distributive disjunction is defined as the first division meiotic segregation of either nonhomologous chromosomes that lack homologs or homologous chromosomes that have not recombined. To determine if chromosomes from the yeast Saccharomyces cerevisiae were capable of distributive disjunction, we constructed a strain ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Guacci V,Kaback DB

    更新日期:1991-03-01 00:00:00

  • Sex-specific differences in meiotic chromosome segregation revealed by dicentric bridge resolution in mice.

    abstract::The meiotic properties of paracentric inversion heterozygotes have been well studied in insects and plants, but not in mammalian species. In essence, a single meiotic recombination event within the inverted region results in the formation of a dicentric chromatid, which usually breaks or is stretched between the two d...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Koehler KE,Millie EA,Cherry JP,Burgoyne PS,Evans EP,Hunt PA,Hassold TJ

    更新日期:2002-11-01 00:00:00

  • Simulation studies on electrophoretically detectable genetic variability in a finite population.

    abstract::Using a new model of isoalleles, extensive Monte Carlo experiments were performed to examine the pattern of allelic distribution in a finite population. In this model it was assumed that the set of allelic states is represented by discrete points on a one-dimensional lattice and that change of state by mutation occurs...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Ohta T,Kimura M

    更新日期:1974-03-01 00:00:00

  • Cloning of a mutable bz2 allele of maize by transposon tagging and differential hybridization.

    abstract::Sequences of Bronze2 (Bz2), a maize gene which is required for the synthesis of the purple pigment anthocyanin, have been cloned by combining the techniques of transposon tagging and differential hybridization. First, a mutable bz2 allele (bz2-mu1) was recovered from a Mutator line. The mutation was assumed to result ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: McLaughlin M,Walbot V

    更新日期:1987-12-01 00:00:00

  • The number of loci that affect milk production traits in dairy cattle.

    abstract::We have used the results of an experiment mapping quantitative trait loci (QTL) affecting milk yield and composition to estimate the total number of QTL affecting these traits. We did this by estimating the number of segregating QTL within a half-sib daughter design using logic similar to that used to estimate the "fa...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.107.077784

    authors: Chamberlain AJ,McPartlan HC,Goddard ME

    更新日期:2007-10-01 00:00:00

  • The hitchhiking effect of an autosomal meiotic drive gene.

    abstract::Transmission-ratio distortion is a departure from a 1:1 segregation of alleles in the gametes of a heterozygous individual. The so-called driving allele is strongly selected regardless of its effect on the fitness of the carrying individual. It may then have an important impact on neutral polymorphism due to the genet...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.105.052977

    authors: Chevin LM,Hospital F

    更新日期:2006-07-01 00:00:00

  • Models of evolution of reproductive isolation.

    abstract::Mathematical models are presented for the evolution of postmating and premating reproductive isolation. In the case of postmating isolation it is assumed that hybrid sterility or inviability is caused by incompatibility of alleles at one or two loci, and evolution of reproductive isolation occurs by random fixation of...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Nei M,Maruyama T,Wu CI

    更新日期:1983-03-01 00:00:00

  • Integration of Stress Signaling in Caenorhabditis elegans Through Cell-Nonautonomous Contributions of the JNK Homolog KGB-1.

    abstract::Dealing with physiological stress is a necessity for all organisms, and the pathways charged with this task are highly conserved in Metazoa . Accumulating evidence highlights cell-nonautonomous activation as an important mode of integrating stress responses at the organism level. Work in Caenorhabditis elegans highlig...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.118.301446

    authors: Liu L,Ruediger C,Shapira M

    更新日期:2018-12-01 00:00:00

  • Evidence for the involvement of serine transhydroxymethylase in serine and glycine interconversions in Salmonella typhimurium.

    abstract::Salmonella typhimurium can normally use glycine as a serine source to support the growth of serine auxotrophs. This reaction was presumed to occur by the reversible activity of the enzyme, serine transhydroxymethylase (E. C. 2. 1. 2. 1; L-serine: tetrahydrofolic-5, 10 transhydroxymethylase), which is responsible for g...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Stauffer GV,Brenchley JE

    更新日期:1974-06-01 00:00:00

  • Slipped-strand mispairing at noncontiguous repeats in Poecilia reticulata: a model for minisatellite birth.

    abstract::The standard slipped-strand mispairing (SSM) model for the formation of variable number tandem repeats (VNTRs) proposes that a few tandem repeats, produced by chance mutations, provide the "raw material" for VNTR expansion. However, this model is unlikely to explain the formation of VNTRs with long motifs (e.g., minis...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Taylor JS,Breden F

    更新日期:2000-07-01 00:00:00

  • Among-environment heteroscedasticity and genetic autocorrelation: implications for the study of phenotypic plasticity.

    abstract::The impact of among-environment heteroscedasticity and genetic autocorrelation on the analysis of phenotypic plasticity is examined. Among-environment heteroscedasticity occurs when genotypic variances differ among environments. Genetic autocorrelation arises whenever the responses of a genotype to different environme...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Dutilleul P,Potvin C

    更新日期:1995-04-01 00:00:00

  • The sex chromosomes of Silene latifolia revisited and revised.

    abstract::Classical studies have established that, during meiosis, the X and Y chromosomes of the model dioecious plant Silene latifolia pair over a region at the ends of their q arms. We used fluorescence in situ hybridization of two molecular markers to demonstrate that this widely accepted model is incorrect. From these data...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Lengerova M,Moore RC,Grant SR,Vyskot B

    更新日期:2003-10-01 00:00:00

  • Fitness effects of EMS-induced mutations on the X chromosome of Drosophila melanogaster. I. Viability effects and heterozygous fitness effects.

    abstract::Drosophila melanogaster X chromosomes were mutagenized by feeding males sucrose solutions containing ethyl methanesulfonate (EMS); the concentrations of EMS in the food were 2.5 mM, 5.0 mM, and 10.0 mM. Chromosomes were exposed to the mutagen up to three times by treating males in succeeding generations. After treatme...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Mitchell JA

    更新日期:1977-12-01 00:00:00

  • DNA sequence-mediated, evolutionarily rapid redistribution of meiotic recombination hotspots.

    abstract::Hotspots regulate the position and frequency of Spo11 (Rec12)-initiated meiotic recombination, but paradoxically they are suicidal and are somehow resurrected elsewhere in the genome. After the DNA sequence-dependent activation of hotspots was discovered in fission yeast, nearly two decades elapsed before the key real...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.111.134130

    authors: Wahls WP,Davidson MK

    更新日期:2011-11-01 00:00:00

  • Length variation and heteroplasmy are frequent in mitochondrial DNA from parthenogenetic and bisexual lizards (genus Cnemidophorus).

    abstract::Samples of mtDNA isolated from each of 92 lizards representing all color pattern classes of Cnemidophorus tesselatus and two populations of C. tigris marmoratus were digested with the restriction endonucleases MboI, TaqI, RsaI and MspI. The mtDNA fragment sizes were compared after radioactive labeling and gel electrop...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Densmore LD,Wright JW,Brown WM

    更新日期:1985-08-01 00:00:00

  • The genetic structure of natural populations of Drosophila melanogaster. XX. Comparison of genotype-environment interaction in viability between a northern and a southern population.

    abstract::In order to examine the operation of diversifying selection as the maintenance mechanism of excessive additive genetic variance for viability in southern populations in comparison with northern populations of Drosophila melanogaster, two sets of experiments were conducted using second chromosomes extracted from the Og...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Takano T,Kusakabe S,Mukai T

    更新日期:1987-10-01 00:00:00