Common variants at 11p13 are associated with susceptibility to tuberculosis.

Abstract:

:After imputation of data from the 1000 Genomes Project into a genome-wide dataset of Ghanaian individuals with tuberculosis and controls, we identified a resistance locus on chromosome 11p13 downstream of the WT1 gene (encoding Wilms tumor 1). The strongest signal was obtained at the rs2057178 SNP (P = 2.63 × 10(-9)). Replication in Gambian, Indonesian and Russian tuberculosis case-control study cohorts increased the significance level for the association with this SNP to P = 2.57 × 10(-11).

journal_name

Nat Genet

journal_title

Nature genetics

authors

Thye T,Owusu-Dabo E,Vannberg FO,van Crevel R,Curtis J,Sahiratmadja E,Balabanova Y,Ehmen C,Muntau B,Ruge G,Sievertsen J,Gyapong J,Nikolayevskyy V,Hill PC,Sirugo G,Drobniewski F,van de Vosse E,Newport M,Alisjahbana B,

doi

10.1038/ng.1080

subject

Has Abstract

pub_date

2012-02-05 00:00:00

pages

257-9

issue

3

eissn

1061-4036

issn

1546-1718

pii

ng.1080

journal_volume

44

pub_type

杂志文章,meta分析
  • Untangling the genetics from the epigenetics in pancreatic cancer metastasis.

    abstract::Comparative genomic analyses of primary tumors and metastases within individuals with pancreatic cancer have exposed the complex clonal dynamics that underlie the dissemination of cancer cells to distant sites. Recent studies implicate non-genetic mechanisms in this process, particularly fluctuations in chromatin stat...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.3798

    authors: Vakoc CR,Tuveson DA

    更新日期:2017-02-24 00:00:00

  • Integration of summary data from GWAS and eQTL studies predicts complex trait gene targets.

    abstract::Genome-wide association studies (GWAS) have identified thousands of genetic variants associated with human complex traits. However, the genes or functional DNA elements through which these variants exert their effects on the traits are often unknown. We propose a method (called SMR) that integrates summary-level data ...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.3538

    authors: Zhu Z,Zhang F,Hu H,Bakshi A,Robinson MR,Powell JE,Montgomery GW,Goddard ME,Wray NR,Visscher PM,Yang J

    更新日期:2016-05-01 00:00:00

  • Hyperactivation of HUSH complex function by Charcot-Marie-Tooth disease mutation in MORC2.

    abstract::Dominant mutations in the MORC2 gene have recently been shown to cause axonal Charcot-Marie-Tooth (CMT) disease, but the cellular function of MORC2 is poorly understood. Here, through a genome-wide CRISPR-Cas9-mediated forward genetic screen, we identified MORC2 as an essential gene required for epigenetic silencing b...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.3878

    authors: Tchasovnikarova IA,Timms RT,Douse CH,Roberts RC,Dougan G,Kingston RE,Modis Y,Lehner PJ

    更新日期:2017-07-01 00:00:00

  • Finding host targets for HIV therapy.

    abstract::A CRISPR screen conducted in a CD4+ T cell leukemia line has identified host factors required for HIV infection but dispensable for cellular survival. The results highlight sulfation on the HIV co-receptor CCR5 and cellular aggregation as potential targets for therapeutic intervention. ...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.3777

    authors: Tsui CK,Gupta A,Bassik MC

    更新日期:2017-01-31 00:00:00

  • Rapid amplification of a retrotransposon subfamily is evolving the mouse genome.

    abstract::Retrotransposition affects genome structure by increasing repetition and producing insertional mutations. Dispersion of the retrotransposon L1 throughout mammalian genomes suggests that L1 activity might be an important evolutionary force. Here we report that L1 retrotransposition contributes to rapid genome evolution...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/3104

    authors: DeBerardinis RJ,Goodier JL,Ostertag EM,Kazazian HH Jr

    更新日期:1998-11-01 00:00:00

  • Common variants at 6p21.1 are associated with large artery atherosclerotic stroke.

    abstract::Genome-wide association studies (GWAS) have not consistently detected replicable genetic risk factors for ischemic stroke, potentially due to etiological heterogeneity of this trait. We performed GWAS of ischemic stroke and a major ischemic stroke subtype (large artery atherosclerosis, LAA) using 1,162 ischemic stroke...

    journal_title:Nature genetics

    pub_type: 杂志文章,meta分析

    doi:10.1038/ng.2397

    authors: Holliday EG,Maguire JM,Evans TJ,Koblar SA,Jannes J,Sturm JW,Hankey GJ,Baker R,Golledge J,Parsons MW,Malik R,McEvoy M,Biros E,Lewis MD,Lincz LF,Peel R,Oldmeadow C,Smith W,Moscato P,Barlera S,Bevan S,Bis JC,Boer

    更新日期:2012-10-01 00:00:00

  • A genetic link between cold responses and flowering time through FVE in Arabidopsis thaliana.

    abstract::Cold induces expression of a number of genes that encode proteins that enhance tolerance to freezing temperatures in plants. A cis-acting element responsive to cold and drought, the C-repeat/dehydration-responsive element (C/DRE), was identified in the Arabidopsis thaliana stress-inducible genes RD29A and COR15a and f...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng1298

    authors: Kim HJ,Hyun Y,Park JY,Park MJ,Park MK,Kim MD,Kim HJ,Lee MH,Moon J,Lee I,Kim J

    更新日期:2004-02-01 00:00:00

  • Molecular basis of Thomsen's disease (autosomal dominant myotonia congenita).

    abstract::Thomsen's disease (autosomal dominant myotonia congenita) has recently been linked to chromosome 7q35 in the region of the human skeletal muscle chloride channel gene (HUMCLC). Single strand conformation polymorphism analysis (SSCP) was used to screen DNA from members of four unrelated pedigrees with this disorder for...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng0493-305

    authors: George AL Jr,Crackower MA,Abdalla JA,Hudson AJ,Ebers GC

    更新日期:1993-04-01 00:00:00

  • Distinct in vivo requirements for establishment versus maintenance of transcriptional repression.

    abstract::Low-level ectopic expression of the Runt transcription factor blocks activation of the Drosophila melanogaster segmentation gene engrailed (en) in odd-numbered parasegments and is associated with a lethal phenotype. Here we show, by using a genetic screen for maternal factors that contribute in a dose-dependent fashio...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng942

    authors: Wheeler JC,VanderZwan C,Xu X,Swantek D,Tracey WD,Gergen JP

    更新日期:2002-09-01 00:00:00

  • Publisher Correction: Compartmentalized activities of the pyruvate dehydrogenase complex sustain lipogenesis in prostate cancer.

    abstract::In the HTML version of this article initially published, the name of author Diletta Di Mitri was miscoded in the XML such that Di was included as part of the given name instead of the family name. The error has been corrected in the HTML version of the article. ...

    journal_title:Nature genetics

    pub_type: 杂志文章,已发布勘误

    doi:10.1038/s41588-018-0181-1

    authors: Chen J,Guccini I,Di Mitri D,Brina D,Revandkar A,Sarti M,Pasquini E,Alajati A,Pinton S,Losa M,Civenni G,Catapano CV,Sgrignani J,Cavalli A,D'Antuono R,Asara JM,Morandi A,Chiarugi P,Crotti S,Agostini M,Montopoli M,

    更新日期:2018-09-01 00:00:00

  • Early TP53 alterations engage environmental exposures to promote gastric premalignancy in an integrative mouse model.

    abstract::Somatic alterations in cancer genes are being detected in normal and premalignant tissue, thus placing greater emphasis on gene-environment interactions that enable disease phenotypes. By combining early genetic alterations with disease-relevant exposures, we developed an integrative mouse model to study gastric prema...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/s41588-019-0574-9

    authors: Sethi NS,Kikuchi O,Duronio GN,Stachler MD,McFarland JM,Ferrer-Luna R,Zhang Y,Bao C,Bronson R,Patil D,Sanchez-Vega F,Liu JB,Sicinska E,Lazaro JB,Ligon KL,Beroukhim R,Bass AJ

    更新日期:2020-02-01 00:00:00

  • A mutant PTH/PTHrP type I receptor in enchondromatosis.

    abstract::Enchondromas are common benign cartilage tumors of bone. They can occur as solitary lesions or as multiple lesions in enchondromatosis (Ollier and Maffucci diseases). Clinical problems caused by enchondromas include skeletal deformity and the potential for malignant change to chondrosarcoma. The extent of skeletal inv...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng844

    authors: Hopyan S,Gokgoz N,Poon R,Gensure RC,Yu C,Cole WG,Bell RS,Jüppner H,Andrulis IL,Wunder JS,Alman BA

    更新日期:2002-03-01 00:00:00

  • Cohesin promotes stochastic domain intermingling to ensure proper regulation of boundary-proximal genes.

    abstract::The human genome can be segmented into topologically associating domains (TADs), which have been proposed to spatially sequester genes and regulatory elements through chromatin looping. Interactions between TADs have also been suggested, presumably because of variable boundary positions across individual cells. Howeve...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/s41588-020-0647-9

    authors: Luppino JM,Park DS,Nguyen SC,Lan Y,Xu Z,Yunker R,Joyce EF

    更新日期:2020-08-01 00:00:00

  • The genome of the hydatid tapeworm Echinococcus granulosus.

    abstract::Cystic echinococcosis (hydatid disease), caused by the tapeworm E. granulosus, is responsible for considerable human morbidity and mortality. This cosmopolitan disease is difficult to diagnose, treat and control. We present a draft genomic sequence for the worm comprising 151.6 Mb encoding 11,325 genes. Comparisons wi...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.2757

    authors: Zheng H,Zhang W,Zhang L,Zhang Z,Li J,Lu G,Zhu Y,Wang Y,Huang Y,Liu J,Kang H,Chen J,Wang L,Chen A,Yu S,Gao Z,Jin L,Gu W,Wang Z,Zhao L,Shi B,Wen H,Lin R,Jones MK,Brejova B,Vinar T,Zhao G,McManus DP,C

    更新日期:2013-10-01 00:00:00

  • New HLA-DPB1 alleles generated by interallelic gene conversion detected by analysis of sperm.

    abstract::The rate at which allelic diversity at the HLA loci evolves has been the subject of considerable controversy. The patchwork pattern of sequence polymorphism within the second exon of the HLA class II loci, particularly in the DPB1 locus, may have been generated by segmental exchange (gene conversion). We have analysed...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng0895-407

    authors: Zangenberg G,Huang MM,Arnheim N,Erlich H

    更新日期:1995-08-01 00:00:00

  • Mutations in IRX5 impair craniofacial development and germ cell migration via SDF1.

    abstract::Using homozygosity mapping and locus resequencing, we found that alterations in the homeodomain of the IRX5 transcription factor cause a recessive congenital disorder affecting face, brain, blood, heart, bone and gonad development. We found through in vivo modeling in Xenopus laevis embryos that Irx5 modulates the mig...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.2259

    authors: Bonnard C,Strobl AC,Shboul M,Lee H,Merriman B,Nelson SF,Ababneh OH,Uz E,Güran T,Kayserili H,Hamamy H,Reversade B

    更新日期:2012-05-13 00:00:00

  • Mutations in genes encoding ribonuclease H2 subunits cause Aicardi-Goutières syndrome and mimic congenital viral brain infection.

    abstract::Aicardi-Goutières syndrome (AGS) is an autosomal recessive neurological disorder, the clinical and immunological features of which parallel those of congenital viral infection. Here we define the composition of the human ribonuclease H2 enzyme complex and show that AGS can result from mutations in the genes encoding a...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng1842

    authors: Crow YJ,Leitch A,Hayward BE,Garner A,Parmar R,Griffith E,Ali M,Semple C,Aicardi J,Babul-Hirji R,Baumann C,Baxter P,Bertini E,Chandler KE,Chitayat D,Cau D,Déry C,Fazzi E,Goizet C,King MD,Klepper J,Lacombe D,Lan

    更新日期:2006-08-01 00:00:00

  • Exome sequencing identifies recurrent mutations in NF1 and RASopathy genes in sun-exposed melanomas.

    abstract::We report on whole-exome sequencing (WES) of 213 melanomas. Our analysis established NF1, encoding a negative regulator of RAS, as the third most frequently mutated gene in melanoma, after BRAF and NRAS. Inactivating NF1 mutations were present in 46% of melanomas expressing wild-type BRAF and RAS, occurred in older pa...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.3361

    authors: Krauthammer M,Kong Y,Bacchiocchi A,Evans P,Pornputtapong N,Wu C,McCusker JP,Ma S,Cheng E,Straub R,Serin M,Bosenberg M,Ariyan S,Narayan D,Sznol M,Kluger HM,Mane S,Schlessinger J,Lifton RP,Halaban R

    更新日期:2015-09-01 00:00:00

  • MAGIC, an in vivo genetic method for the rapid construction of recombinant DNA molecules.

    abstract::We describe a highly engineered in vivo cloning method, mating-assisted genetically integrated cloning (MAGIC), that facilitates the rapid construction of recombinant DNA molecules. MAGIC uses bacterial mating, in vivo site-specific endonuclease cleavage and homologous recombination to catalyze the transfer of a DNA f...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng1505

    authors: Li MZ,Elledge SJ

    更新日期:2005-03-01 00:00:00

  • Somatic mutations of the Parkinson's disease-associated gene PARK2 in glioblastoma and other human malignancies.

    abstract::Mutation of the gene PARK2, which encodes an E3 ubiquitin ligase, is the most common cause of early-onset Parkinson's disease. In a search for multisite tumor suppressors, we identified PARK2 as a frequently targeted gene on chromosome 6q25.2-q27 in cancer. Here we describe inactivating somatic mutations and frequent ...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.491

    authors: Veeriah S,Taylor BS,Meng S,Fang F,Yilmaz E,Vivanco I,Janakiraman M,Schultz N,Hanrahan AJ,Pao W,Ladanyi M,Sander C,Heguy A,Holland EC,Paty PB,Mischel PS,Liau L,Cloughesy TF,Mellinghoff IK,Solit DB,Chan TA

    更新日期:2010-01-01 00:00:00

  • RPA regulates telomerase action by providing Est1p access to chromosome ends.

    abstract::Replication protein A (RPA) is a highly conserved single-stranded DNA-binding protein involved in DNA replication, recombination and repair. We show here that RPA is present at the telomeres of the budding yeast Saccharomyces cerevisiae, with a maximal association in S phase. A truncation of the N-terminal region of R...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng1284

    authors: Schramke V,Luciano P,Brevet V,Guillot S,Corda Y,Longhese MP,Gilson E,Géli V

    更新日期:2004-01-01 00:00:00

  • Cultivated tomato clock runs slow.

    abstract::The plant circadian clock is a complex network of genes crucial for plant survival. A new study finds that domestication gradually slowed down the circadian clock of tomato via selection on two major genes-one that delayed phasing of the clock with daylight, whereas the other induced a longer period. ...

    journal_title:Nature genetics

    pub_type: 评论,杂志文章

    doi:10.1038/ng.3476

    authors: Kay SA,Remigereau MS

    更新日期:2016-01-01 00:00:00

  • Targeted mutation in the col5a2 gene reveals a regulatory role for type V collagen during matrix assembly.

    abstract::The tissue-specific organization of collagen molecules into tridimensional macroaggregates determines the physiomechanical properties of most connective tissues, but the factors and mechanisms controlling this process are unknown. It has been postulated that quantitatively minor types V and XI collagen regulate the gr...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng0195-31

    authors: Andrikopoulos K,Liu X,Keene DR,Jaenisch R,Ramirez F

    更新日期:1995-01-01 00:00:00

  • Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.

    abstract::Numerous genetic loci have been associated with systolic blood pressure (SBP) and diastolic blood pressure (DBP) in Europeans. We now report genome-wide association studies of pulse pressure (PP) and mean arterial pressure (MAP). In discovery (N = 74,064) and follow-up studies (N = 48,607), we identified at genome-wid...

    journal_title:Nature genetics

    pub_type: 杂志文章,meta分析

    doi:10.1038/ng.922

    authors: Wain LV,Verwoert GC,O'Reilly PF,Shi G,Johnson T,Johnson AD,Bochud M,Rice KM,Henneman P,Smith AV,Ehret GB,Amin N,Larson MG,Mooser V,Hadley D,Dörr M,Bis JC,Aspelund T,Esko T,Janssens AC,Zhao JH,Heath S,Laan M,

    更新日期:2011-09-11 00:00:00

  • Mekk3 is essential for early embryonic cardiovascular development.

    abstract::The early development of blood vessels consists of two phases, vasculogenesis and angiogenesis, which involve distinct and also overlapping molecular regulators, but the intracellular signal transduction pathways involved in these processes have not been well defined. We disrupted Map3k3 (also known as Mekk3), which e...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/73550

    authors: Yang J,Boerm M,McCarty M,Bucana C,Fidler IJ,Zhuang Y,Su B

    更新日期:2000-03-01 00:00:00

  • Normal long bone growth and development in type X collagen-null mice.

    abstract::To investigate the role of type X collagen in skeletal development, we have generated type X collagen-null mice. Surprisingly, mice without type X collagen were viable and fertile and had no gross abnormalities in long bone growth or development. No differences were detected between the type X collagen-null mice and c...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng1094-129

    authors: Rosati R,Horan GS,Pinero GJ,Garofalo S,Keene DR,Horton WA,Vuorio E,de Crombrugghe B,Behringer RR

    更新日期:1994-10-01 00:00:00

  • Mutational and functional analyses reveal that ST7 is a highly conserved tumor-suppressor gene on human chromosome 7q31.

    abstract::Loss of heterozygosity (LOH) of markers on human chromosome 7q31 is frequently encountered in a variety of human neoplasias, indicating the presence of a tumor-suppressor gene (TSG). By a combination of microcell-fusion and deletion-mapping studies, we previously established that this TSG resides within a critical reg...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/86891

    authors: Zenklusen JC,Conti CJ,Green ED

    更新日期:2001-04-01 00:00:00

  • Mutation of TRPM6 causes familial hypomagnesemia with secondary hypocalcemia.

    abstract::Familial hypomagnesemia with secondary hypocalcemia (OMIM 602014) is an autosomal recessive disease that results in electrolyte abnormalities shortly after birth. Affected individuals show severe hypomagnesemia and hypocalcemia, which lead to seizures and tetany. The disorder has been thought to be caused by a defect ...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng901

    authors: Walder RY,Landau D,Meyer P,Shalev H,Tsolia M,Borochowitz Z,Boettger MB,Beck GE,Englehardt RK,Carmi R,Sheffield VC

    更新日期:2002-06-01 00:00:00

  • Author Correction: Reference component analysis of single-cell transcriptomes elucidates cellular heterogeneity in human colorectal tumors.

    abstract::In the version of the article published, the author list is not accurate. Igor Cima and Min-Han Tan should have been authors, appearing after Mark Wong in the author list, while Paul Jongjoon Choi should not have been listed as an author. Igor Cima and Min-Han Tan both have the affiliation Institute of Bioengineering ...

    journal_title:Nature genetics

    pub_type: 杂志文章,已发布勘误

    doi:10.1038/s41588-018-0299-1

    authors: Li H,Courtois ET,Sengupta D,Tan Y,Chen KH,Goh JJL,Kong SL,Chua C,Hon LK,Tan WS,Wong M,Cima I,Tan MH,Wee LJK,Hillmer AM,Tan IB,Robson P,Prabhakar S

    更新日期:2018-12-01 00:00:00

  • Porphobilinogen deaminase deficiency in mice causes a neuropathy resembling that of human hepatic porphyria.

    abstract::Acute intermittent porphyria (AIP) is a human disease resulting from a dominantly inherited partial deficiency of the heme biosynthetic enzyme, porphobilinogen deaminase (PBGD). The frequency of the trait for AIP is 1/10,000 in most populations, but may be markedly higher (1/500) in psychiatric patients. The clinical ...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng0296-195

    authors: Lindberg RL,Porcher C,Grandchamp B,Ledermann B,Bürki K,Brandner S,Aguzzi A,Meyer UA

    更新日期:1996-02-01 00:00:00