Drug-sensitive DNA polymerase δ reveals a role for mismatch repair in checkpoint activation in yeast.

Abstract:

:We have used a novel method to activate the DNA damage S-phase checkpoint response in Saccharomyces cerevisiae to slow lagging-strand DNA replication by exposing cells expressing a drug-sensitive DNA polymerase δ (L612M-DNA pol δ) to the inhibitory drug phosphonoacetic acid (PAA). PAA-treated pol3-L612M cells arrest as large-budded cells with a single nucleus in the bud neck. This arrest requires all of the components of the S-phase DNA damage checkpoint: Mec1, Rad9, the DNA damage clamp Ddc1-Rad17-Mec3, and the Rad24-dependent clamp loader, but does not depend on Mrc1, which acts as the signaling adapter for the replication checkpoint. In addition to the above components, a fully functional mismatch repair system, including Exo1, is required to activate the S-phase damage checkpoint and for cells to survive drug exposure. We propose that mismatch repair activity produces persisting single-stranded DNA gaps in PAA-treated pol3-L612M cells that are required to increase DNA damage above the threshold needed for checkpoint activation. Our studies have important implications for understanding how cells avoid inappropriate checkpoint activation because of normal discontinuities in lagging-strand replication and identify a role for mismatch repair in checkpoint activation that is needed to maintain genome integrity.

journal_name

Genetics

journal_title

Genetics

authors

Reha-Krantz LJ,Siddique MS,Murphy K,Tam A,O'Carroll M,Lou S,Schultz A,Boone C

doi

10.1534/genetics.111.131938

subject

Has Abstract

pub_date

2011-12-01 00:00:00

pages

1211-24

issue

4

eissn

0016-6731

issn

1943-2631

pii

genetics.111.131938

journal_volume

189

pub_type

杂志文章

相关文献

GENETICS文献大全
  • Evolutionary relationships of four species of hawaiian Drosophila as measured by DNA reassociation.

    abstract::Four species of the Hawaiian Drosophila planitibia subgroup which are homosequential in their polytene chromosomes are resident on the islands of Molokai, Maui and Hawaii. Comparisons of DNA sequence divergence in these four have been made by hybridization of total single-copy radiolabeled tracer DNA from each of the ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Hunt JA,Carson HL

    更新日期:1983-06-01 00:00:00

  • An ancient retrovirus-like element contains hot spots for SINE insertion.

    abstract::Vertebrate retrotransposons have been used extensively for phylogenetic analyses and studies of molecular evolution. Information can be obtained from specific inserts either by comparing sequence differences that have accumulated over time in orthologous copies of that insert or by determining the presence or absence ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Cantrell MA,Filanoski BJ,Ingermann AR,Olsson K,DiLuglio N,Lister Z,Wichman HA

    更新日期:2001-06-01 00:00:00

  • Starvation-Induced Stress Response Is Critically Impacted by Ceramide Levels in Caenorhabditis elegans.

    abstract::Our understanding of the cellular mechanisms by which animals regulate their response to starvation is limited, despite the strong relevance of the problem to major human health issues. The L1 diapause of Caenorhabditis elegans, where first-stage larvae arrest in response to a food-less environment, is an excellent sy...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.116.194282

    authors: Cui M,Wang Y,Cavaleri J,Kelson T,Teng Y,Han M

    更新日期:2017-02-01 00:00:00

  • Cell cycle arrest of cdc mutants and specificity of the RAD9 checkpoint.

    abstract::In eucaryotes a cell cycle control called a checkpoint ensures that mitosis occurs only after chromosomes are completely replicated and any damage is repaired. The function of this checkpoint in budding yeast requires the RAD9 gene. Here we examine the role of the RAD9 gene in the arrest of the 12 cell division cycle ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Weinert TA,Hartwell LH

    更新日期:1993-05-01 00:00:00

  • The small ribosomal subunit RNA isoforms in Plasmodium cynomolgi.

    abstract::We report the isolation, characterization and analysis of the small subunit rRNA genes in Plasmodium cynomolgi (Ceylon). As in other Plasmodium species, these genes are present in low copy number, are unlinked and form two types that are distinct in sequence and are expressed stage specifically. The asexually expresse...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Corredor V,Enea V

    更新日期:1994-03-01 00:00:00

  • Polycomblike: a gene that appears to be required for the normal expression of the bithorax and antennapedia gene complexes of Drosophila melanogaster.

    abstract::A newly identified gene is described that is required for the maintenance of normal identities in many of the body segments of the fly. The effects of mutants in this gene, which is called Polycomblike (Pcl), suggest that its wild-type allele functions in the regulation of the bithorax gene complex (BX-C) and the Ante...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Duncan IM

    更新日期:1982-09-01 00:00:00

  • Mutations causing transformation of sexual phenotype in the nematode Caenorhabditis elegans.

    abstract::Ten mutations are described that transform genotypic hermaphrodites of the nematode Caenorhabditis elegans into phenotypic males. These fall into three autosomal complementation groups, termed tra-1, tra-2, and tra-3. Two alleles of tra-1 produce almost complete transformation, to a fertile male phenotype; such transf...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Hodgkin JA,Brenner S

    更新日期:1977-06-01 00:00:00

  • Multiple mechanisms for degradation of bacteriophage T4 soc mRNA.

    abstract::The dmd gene of bacteriophage T4 is required for regulation of mRNA stability in a stage-dependent manner during infection. When this gene is mutated, late genes are globally silenced because of rapid degradation of mRNAs. To investigate the mechanism of such mRNA degradation, we analyzed the late gene soc transcripts...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Kai T,Yonesaki T

    更新日期:2002-01-01 00:00:00

  • A Bayesian Approach to Inferring Rates of Selfing and Locus-Specific Mutation.

    abstract::We present a Bayesian method for characterizing the mating system of populations reproducing through a mixture of self-fertilization and random outcrossing. Our method uses patterns of genetic variation across the genome as a basis for inference about reproduction under pure hermaphroditism, gynodioecy, and a model de...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.115.179093

    authors: Redelings BD,Kumagai S,Tatarenkov A,Wang L,Sakai AK,Weller SG,Culley TM,Avise JC,Uyenoyama MK

    更新日期:2015-11-01 00:00:00

  • Accumulation of spontaneous mutations in the ciliate Tetrahymena thermophila.

    abstract::Knowledge of the rate and fitness effects of mutations is essential for understanding the process of evolution. Mutations are inherently difficult to study because they are rare and are frequently eliminated by natural selection. In the ciliate Tetrahymena thermophila, mutations can accumulate in the germline genome w...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.113.153536

    authors: Long HA,Paixão T,Azevedo RB,Zufall RA

    更新日期:2013-10-01 00:00:00

  • VNTR allele frequency distributions under the stepwise mutation model: a computer simulation approach.

    abstract::Variable numbers of tandem repeats (VNTRs) are a class of highly informative and widely dispersed genetic markers. Despite their wide application in biological science, little is known about their mutational mechanisms or population dynamics. The objective of this work was to investigate four summary measures of VNTR ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Shriver MD,Jin L,Chakraborty R,Boerwinkle E

    更新日期:1993-07-01 00:00:00

  • Questions and Assays.

    abstract::The Thomas Hunt Morgan Medal is awarded to an individual Genetics Society of America member for lifetime achievement in the field of genetics. It recognizes the full body of work of an exceptional geneticist. The 2016 recipient is Nancy Kleckner, who has made many significant contributions to our understanding of chro...

    journal_title:Genetics

    pub_type: 历史文章,杂志文章

    doi:10.1534/genetics.116.197608

    authors: Kleckner N

    更新日期:2016-12-01 00:00:00

  • Preferential Occurrence of Nonsister Spores in Two-Spored Asci of SACCHAROMYCES CEREVISIAE: Evidence for Regulation of Spore-Wall Formation by the Spindle Pole Body.

    abstract::Yeast cells subjected to a reversible thermal arrest of meiosis yielded progressively fewer spores per ascus as the arrest was extended. Dissection of two-spored asci by a newly developed method that prevents selection of false asci revealed that the spores were not a random sample of the haploid meiotic products. Mos...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Davidow LS,Goetsch L,Byers B

    更新日期:1980-03-01 00:00:00

  • The Genetics of Axon Guidance and Axon Regeneration in Caenorhabditis elegans.

    abstract::The correct wiring of neuronal circuits depends on outgrowth and guidance of neuronal processes during development. In the past two decades, great progress has been made in understanding the molecular basis of axon outgrowth and guidance. Genetic analysis in Caenorhabditis elegans has played a key role in elucidating ...

    journal_title:Genetics

    pub_type: 杂志文章,评审

    doi:10.1534/genetics.115.186262

    authors: Chisholm AD,Hutter H,Jin Y,Wadsworth WG

    更新日期:2016-11-01 00:00:00

  • Mutation of l7Rn3 shows that Odz4 is required for mouse gastrulation.

    abstract::A mouse homolog of the Drosophila pair-rule gene Odd Oz (Odz4) maps to the critical region of the l7Rn3 locus on mouse chromosome 7. Here we show that Odz4 is an excellent candidate for this allelic series because (1) it spans the entire critical region, (2) the phenotypes correlate with embryonic expression, (3) the ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.104.034967

    authors: Lossie AC,Nakamura H,Thomas SE,Justice MJ

    更新日期:2005-01-01 00:00:00

  • A test of neutrality based on interlocus associations.

    abstract::The evolutionary processes governing variability within genomic regions of low recombination have been the focus of many studies. Here, I investigate the statistical properties of a measure of interlocus genetic associations under the assumption that mutations are selectively neutral and sites are completely linked. T...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Kelly JK

    更新日期:1997-07-01 00:00:00

  • Imputing Genotypes in Biallelic Populations from Low-Coverage Sequence Data.

    abstract::Low-coverage next-generation sequencing methodologies are routinely employed to genotype large populations. Missing data in these populations manifest both as missing markers and markers with incomplete allele recovery. False homozygous calls at heterozygous sites resulting from incomplete allele recovery confound man...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.115.182071

    authors: Fragoso CA,Heffelfinger C,Zhao H,Dellaporta SL

    更新日期:2016-02-01 00:00:00

  • Genetic variation in a heterogeneous environment. V. Spatial heterogeneity in finite populations.

    abstract::The spatial model of Levene (1953) was examined in a finite population and compared to a temporal model. The spatial model was much more effective in retaining genetic variation in a finite population. Furthermore, the haploid spatial model was more effective in retaining genetic variation than the analogous diploid a...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Hedrick PW

    更新日期:1978-06-01 00:00:00

  • Virility Deficiency and the Sex-Ratio Trait in DROSOPHILA PSEUDOOBSCURA. I. Sperm Displacement and Sexual Selection.

    abstract::The Sex-Ratio (SR) phenomenon is associated with the X chromosome of many species of Drosophila. Males carrying SR transmit predominantly sperm bearing the X chromosome. SR, therefore, has a very significant advantage in segregation. This paper provides an experimental analysis of the role of virility selection in pre...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Wu CI

    更新日期:1983-11-01 00:00:00

  • Genomic Structure of Hstx2 Modifier of Prdm9-Dependent Hybrid Male Sterility in Mice.

    abstract::F1 hybrids between mouse inbred strains PWD and C57BL/6 represent the most thoroughly genetically defined model of hybrid sterility in vertebrates. Hybrid male sterility can be fully reconstituted from three components of this model, the Prdm9 gene, intersubspecific homeology of Mus musculus musculus and Mus musculus ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.119.302554

    authors: Lustyk D,Kinský S,Ullrich KK,Yancoskie M,Kašíková L,Gergelits V,Sedlacek R,Chan YF,Odenthal-Hesse L,Forejt J,Jansa P

    更新日期:2019-11-01 00:00:00

  • Genotypic Complexity of Fisher's Geometric Model.

    abstract::Fisher's geometric model was originally introduced to argue that complex adaptations must occur in small steps because of pleiotropic constraints. When supplemented with the assumption of additivity of mutational effects on phenotypic traits, it provides a simple mechanism for the emergence of genotypic epistasis from...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.116.199497

    authors: Hwang S,Park SC,Krug J

    更新日期:2017-06-01 00:00:00

  • The three-dimensional organization of polytene nuclei in male Drosophila melanogaster with compound XY or ring X chromosomes.

    abstract::The three-dimensional organization of polytene chromosomes within nuclei containing rearranged X chromosomes was examined in male Drosophila melanogaster. Salivary glands of third instar larvae containing either an inverted X chromosome (YSX.YL, In(1)EN/O) or a ring X chromosome (R(1) 2/BSYy+) were fixed, embedded, an...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Mathog D,Sedat JW

    更新日期:1989-02-01 00:00:00

  • Selective Somatic Elimination of NICOTIANA GLUTINOSA Chromosomes in the F(1) Hybrids of N. SUAVEOLENS and N. GLUTINOSA.

    abstract::The F(1) hybrids of Nicotiana suaveolens (subgenus Petunioides, 2n = 32) and N. glutinosa (subgenus Tabacum, 2n = 24), were examined during their development, from seedlings to mature plants. It was observed that in the hybrids, there was a progressive change of dominant N. glutinosa morphological characteristics towa...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Gupta SB,Gupta P

    更新日期:1973-04-01 00:00:00

  • The rec8 gene of Schizosaccharomyces pombe is involved in linear element formation, chromosome pairing and sister-chromatid cohesion during meiosis.

    abstract::The fission yeast Schizosaccharomyces pombe does not form tripartite synaptonemal complexes during meiotic prophase, but axial core-like structures (linear elements). To probe the relationship between meiotic recombination and the structure, pairing, and segregation of meiotic chromosomes, we genetically and cytologic...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Molnar M,Bähler J,Sipiczki M,Kohli J

    更新日期:1995-09-01 00:00:00

  • Role of the Tsc1-Tsc2 complex in signaling and transport across the cell membrane in the fission yeast Schizosaccharomyces pombe.

    abstract::Heterozygous inactivation of either human TSC1 or TSC2 causes tuberous sclerosis (TSC), in which development of benign tumors, hamartomas, occurs via a two-hit mechanism. In this study, fission yeast genes homologous to TSC1 and TSC2 were identified, and their protein products were shown to physically interact like th...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Matsumoto S,Bandyopadhyay A,Kwiatkowski DJ,Maitra U,Matsumoto T

    更新日期:2002-07-01 00:00:00

  • Isolation and molecular characterization of the Aspergillus nidulans wA gene.

    abstract::The walls of Aspergillus nidulans conidia contain a green pigment that protects the spores from damage by ultraviolet light. At least two genes, wA and yA, are required for pigment synthesis: yA mutants produce yellow spores, wA mutants produce white spores, and wA mutations are epistatic to yA mutations. We cloned wA...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Mayorga ME,Timberlake WE

    更新日期:1990-09-01 00:00:00

  • A Genetic Screen for Pre-mRNA Splicing Mutants of Arabidopsis thaliana Identifies Putative U1 snRNP Components RBM25 and PRP39a.

    abstract::In a genetic screen for mutants showing modified splicing of an alternatively spliced GFP reporter gene in Arabidopsis thaliana, we identified mutations in genes encoding the putative U1 small nuclear ribonucleoprotein (snRNP) factors RBM25 and PRP39a. The latter has not yet been studied for its role in pre-messenger ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.117.300149

    authors: Kanno T,Lin WD,Fu JL,Chang CL,Matzke AJM,Matzke M

    更新日期:2017-12-01 00:00:00

  • Maintenance of Heterochromatin by the Large Subunit of the CAF-1 Replication-Coupled Histone Chaperone Requires Its Interaction with HP1a Through a Conserved Motif.

    abstract::In eukaryotic cells, the organization of genomic DNA into chromatin regulates many biological processes, from the control of gene expression to the regulation of chromosome segregation. The proper maintenance of this structure upon cell division is therefore of prime importance during development for the maintenance o...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.116.190785

    authors: Roelens B,Clémot M,Leroux-Coyau M,Klapholz B,Dostatni N

    更新日期:2017-01-01 00:00:00

  • A non-Mendelian MAPK-generated hereditary unit controlled by a second MAPK pathway in Podospora anserina.

    abstract::The Podospora anserina PaMpk1 MAP kinase (MAPK) signaling pathway can generate a cytoplasmic and infectious element resembling prions. When present in the cells, this C element causes the crippled growth (CG) cell degeneration. CG results from the inappropriate autocatalytic activation of the PaMpk1 MAPK pathway durin...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.112.139469

    authors: Lalucque H,Malagnac F,Brun S,Kicka S,Silar P

    更新日期:2012-06-01 00:00:00

  • Knockout targeting of the Drosophila nap1 gene and examination of DNA repair tracts in the recombination products.

    abstract::We used ends-in gene targeting to generate knockout mutations of the nucleosome assembly protein 1 (Nap1) gene in Drosophila melanogaster. Three independent targeted null-knockout mutations were produced. No wild-type NAP1 protein could be detected in protein extracts. Homozygous Nap1(KO) knockout flies were either em...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Lankenau S,Barnickel T,Marhold J,Lyko F,Mechler BM,Lankenau DH

    更新日期:2003-02-01 00:00:00