Distant cousins: genomic and sequence diversity within the BPI fold-containing (BPIF)/PLUNC protein family.

Abstract:

:PLUNC (palate, lung and nasal epithelium clone) proteins make up the largest branch of the BPI (bactericidal/permeability-increasing protein)/LBP (lipopolysaccharide-binding protein) family of lipid-transfer proteins. PLUNCs make up one of the most rapidly evolving mammalian protein families and exhibit low levels of sequence similarity coupled with multiple examples of species-specific gene acquisition and gene loss. Vertebrate genomes contain multiple examples of genes that do not meet our original definition of what is required to be a member of the PLUNC family, namely conservation of exon numbers/sizes, overall protein size, genomic location and the presence of a conserved disulfide bond. This suggests that evolutionary forces have continued to act on the structure of this conserved domain in what are likely to be functionally important ways.

journal_name

Biochem Soc Trans

authors

Bingle CD,Bingle L,Craven CJ

doi

10.1042/BST0390961

subject

Has Abstract

pub_date

2011-08-01 00:00:00

pages

961-5

issue

4

eissn

0300-5127

issn

1470-8752

pii

BST0390961

journal_volume

39

pub_type

杂志文章,评审
  • Emerging paradigms for PilZ domain-mediated C-di-GMP signaling.

    abstract::PilZ domain-containing proteins constitute a large family of bacterial signaling proteins. As a widely distributed protein domain for the binding of the second messenger c-di-GMP, the canonical PilZ domain contains a set of motifs that define the binding site for c-di-GMP and an allosteric switch for propagating local...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST20180543

    authors: Cheang QW,Xin L,Chea RYF,Liang ZX

    更新日期:2019-02-28 00:00:00

  • Mesophyll conductance: the leaf corridors for photosynthesis.

    abstract::Besides stomata, the photosynthetic CO2 pathway also involves the transport of CO2 from the sub-stomatal air spaces inside to the carboxylation sites in the chloroplast stroma, where Rubisco is located. This pathway is far to be a simple and direct way, formed by series of consecutive barriers that the CO2 should cros...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章

    doi:10.1042/BST20190312

    authors: Gago J,Daloso DM,Carriquí M,Nadal M,Morales M,Araújo WL,Nunes-Nesi A,Flexas J

    更新日期:2020-04-29 00:00:00

  • On conducting electron traffic across the periplasm.

    abstract::Dissimilatory metal-reducing bacteria are able to conduct electrons from their cytoplasmic membrane across the periplasm and the outer membrane to redox proteins located on the surface of their cells. The Mtr respiratory pathway in Shewanella is the best-understood metal-reducing pathway to date. The core components o...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章

    doi:10.1042/BST20120129

    authors: Gralnick JA

    更新日期:2012-12-01 00:00:00

  • Multifaceted roles of long non-coding RNAs in triple-negative breast cancer: biology and clinical applications.

    abstract::Triple-negative breast cancer (TNBC) is a heterogeneous breast cancer subtype that lacks targeted therapy due to the absence of estrogen, progesterone, and HER2 receptors. Moreover, TNBC was shown to have a poor prognosis, since it involves aggressive phenotypes that confer significant hindrance to therapeutic treatme...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章

    doi:10.1042/BST20200666

    authors: Rajagopal T,Talluri S,Venkatabalasubramanian S,Dunna NR

    更新日期:2020-12-01 00:00:00

  • Polyamine dependence of normal cell-cycle progression.

    abstract::The driving force of the cell cycle is the activities of cyclin-dependent kinases (CDKs). Key steps in the regulation of the cell cycle therefore must impinge upon the activities of the CDKs. CDKs exert their functions when bound to cyclins that are expressed cyclically during the cell cycle. Polyamine biosynthesis va...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/bst0310366

    authors: Oredsson SM

    更新日期:2003-04-01 00:00:00

  • Lack of TXNIP protects beta-cells against glucotoxicity.

    abstract::Glucotoxicity plays a major role in pancreatic beta-cell apoptosis and diabetes progression, but the factors involved have remained largely unknown. Our recent studies have identified TXNIP (thioredoxin-interacting protein) as a novel pro-apoptotic beta-cell factor that is induced by glucose, suggesting that TXNIP may...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章

    doi:10.1042/BST0360963

    authors: Shalev A

    更新日期:2008-10-01 00:00:00

  • Glyoxalase I--structure, function and a critical role in the enzymatic defence against glycation.

    abstract::Glyoxalase I is part of the glyoxalase system present in the cytosol of cells. The glyoxalase system catalyses the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids. Glyoxalase I catalyses the isomerization of the hemithioacetal, formed spontaneously from alpha-oxoaldehyde an...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/bst0311343

    authors: Thornalley PJ

    更新日期:2003-12-01 00:00:00

  • The role of triacylglycerol as a reservoir of polyunsaturated fatty acids for the rapid production of chloroplastic lipids in certain microalgae.

    abstract::Many microalgae are known to accumulate triacylglycerols (TAGs), especially under nitrate starvation. Generally, these TAGs are predominantly constructed of saturated and monounsaturated fatty acids. In contrast, the TAGs of the red microalga Porphyridium cruentum are rich in arachidonic acid (AA, 20:4 omega6) and eic...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章

    doi:

    authors: Cohen Z,Khozin-Goldberg I,Adlerstein D,Bigogno C

    更新日期:2000-12-01 00:00:00

  • ATM (ataxia telangiectasia mutated): expanding roles in the DNA damage response and cellular homeostasis.

    abstract::DNA damage is one of the most acute threats to cellular homeostasis and life. The cell responds to such damage by activating a vast array of responses, ranging from DNA repair to numerous signalling pathways, which temporarily slow down the cellular life cycle while the damage is being repaired. Sophisticated relays c...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/0300-5127:0290661

    authors: Shiloh Y

    更新日期:2001-11-01 00:00:00

  • Understanding non-coding DNA regions in yeast.

    abstract::Non-coding transcripts play an important role in gene expression regulation in all species, including budding and fission yeast. Such regulatory transcripts include intergenic ncRNA (non-coding RNA), 5' and 3' UTRs, introns and antisense transcripts. In the present review, we discuss advantages and limitations of rece...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST20130144

    authors: Schlackow M,Gullerova M

    更新日期:2013-12-01 00:00:00

  • EOGT and O-GlcNAc on secreted and membrane proteins.

    abstract::Here, we describe a recently discovered O-GlcNAc transferase termed EOGT for EGF domain-specific O-GlcNAc transferase. EOGT transfers GlcNAc (N-acetylglucosamine) to Ser or Thr in secreted and membrane proteins that contain one or more epidermal growth factor-like repeats with a specific consensus sequence. Thus, EOGT...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST20160165

    authors: Varshney S,Stanley P

    更新日期:2017-04-15 00:00:00

  • Small nucleolar RNAs: continuing identification of novel members and increasing diversity of their molecular mechanisms of action.

    abstract::Identified five decades ago amongst the most abundant cellular RNAs, small nucleolar RNAs (snoRNAs) were initially described as serving as guides for the methylation and pseudouridylation of ribosomal RNA through direct base pairing. In recent years, however, increasingly powerful high-throughput genomic approaches an...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章

    doi:10.1042/BST20191046

    authors: Bergeron D,Fafard-Couture É,Scott MS

    更新日期:2020-04-29 00:00:00

  • PI3K-signalling in B- and T-cells: insights from gene-targeted mice.

    abstract::Phosphoinositide 3-kinases (PI3Ks) are important signalling enzymes in most cell types. Recent gene targeting studies have shed light on the importance of this family of lipid kinases in the immune system, and the complex mechanisms by which these kinases are regulated in vivo. We have recently reported a phenotype of...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/bst0310270

    authors: Okkenhaug K,Vanhaesebroeck B

    更新日期:2003-02-01 00:00:00

  • Sterol regulatory element-binding proteins: transcriptional activators of lipid synthesis.

    abstract::Sterol regulatory element-binding proteins (SREBPs) are a family of transcription factors that regulate lipid homoeostasis. Three SREBP isoforms control the expression of more than 30 genes required for the biosynthesis of cholesterol, fatty acids, triacylglycerols and phospholipids. The unique regulation and activati...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/bst0301091

    authors: Horton JD

    更新日期:2002-11-01 00:00:00

  • Coupling of histamine H1 and adenosine A1 receptors to phospholipase C in DDT1MF-2 cells: synergistic interactions and regulation by cyclic AMP.

    abstract::Intracellular cross-talk or synergism between receptors coupled negatively to adenylate cyclase via PTX-sensitive Gi-protein(s) and receptors coupled to phospholipase C via PTX-insensitive G-proteins is prevalent in a variety of cell types (see above) and may represent a universal mechanism for the modulation of phosp...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/bst0211124

    authors: Dickenson JM,Hill SJ

    更新日期:1993-11-01 00:00:00

  • Red, yellow, green go!--A novel tool for microscopic segregation of secretory vesicle pools according to their age.

    abstract::Large dense-core vesicles (LDCVs) were labelled in cultured bovine adrenal chromaffin cells expressing fluorescent chimaeric 'cargo' proteins that were targeted to these secretory vesicles. When the cells were stimulated with nicotine 48 h after transduction, the fractional loss of fluorescent LDCVs was much greater t...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/bst0310851

    authors: Wiegand UK,Duncan RR,Greaves J,Chow RH,Shipston MJ,Apps DK

    更新日期:2003-08-01 00:00:00

  • Grouping of odorant receptors: odour maps in the mammalian olfactory bulb.

    abstract::The olfactory system is unique in that the sensory input is in the form of molecular information carried in a vast variety of odorants. Nearly 1000 types of odorant receptors mediate the initial detection and discrimination of odorants at the molecular-feature level. The discrimination at the molecular level is conver...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/bst0310134

    authors: Mori K

    更新日期:2003-02-01 00:00:00

  • Twins studies as a model for studies on the interaction between smoking and genetic factors in the development of chronic bronchitis.

    abstract::Smoking is the main risk factor for COPD (chronic obstructive pulmonary disease) but genetic factors are of importance, since only a subset of smokers develops the disease. Sex differences have been suggested both in disease prevalence and response to environmental exposures. Furthermore, it has been shown that acquis...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST0370814

    authors: Svartengren M,Engström G,Anderson M,Hallberg J,Edula G,de Verdier MG,Dahlbäck M,Lindberg CM,Forsman-Semb K,Nihlén U,Fehniger TE

    更新日期:2009-08-01 00:00:00

  • Technological advances for interrogating the human kinome.

    abstract::There is increasing appreciation among researchers and clinicians of the value of investigating biology and pathobiology at the level of cellular kinase (kinome) activity. Kinome analysis provides valuable opportunity to gain insights into complex biology (including disease pathology), identify biomarkers of critical ...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST20160163

    authors: Baharani A,Trost B,Kusalik A,Napper S

    更新日期:2017-02-08 00:00:00

  • CRISPR-based gene expression control for synthetic gene circuits.

    abstract::Synthetic gene circuits allow us to govern cell behavior in a programmable manner, which is central to almost any application aiming to harness engineered living cells for user-defined tasks. Transcription factors (TFs) constitute the 'classic' tool for synthetic circuit construction but some of their inherent constra...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章

    doi:10.1042/BST20200020

    authors: Santos-Moreno J,Schaerli Y

    更新日期:2020-10-30 00:00:00

  • Ribozyme-catalysed carbon-carbon bond formation.

    abstract::Numerous RNA molecules with new catalytic properties have been isolated from synthetic combinatorial libraries. A broad range of chemical reactions is catalysed, and nucleic acids can accelerate bond formation between small organic substrates. This review focuses on carbon-carbon bond formation accelerated by in vitro...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/bst0301137

    authors: Jäschke A,Stuhlmann F,Bebenroth D,Keiper S,Wombacher R

    更新日期:2002-11-01 00:00:00

  • VEGF resistance as a molecular basis to explain the angiogenesis paradox in diabetes mellitus.

    abstract::The action of VEGF (vascular endothelial growth factor) is essential to maintain proper endothelial and vascular function. VEGF stimulates virtually all aspects of endothelial function, namely proliferation, migration, permeability and nitric oxide production and release. In addition, the action of VEGF makes the endo...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST0371167

    authors: Waltenberger J

    更新日期:2009-12-01 00:00:00

  • Sodium regulation of GAF domain function.

    abstract::Cyclic nucleotide PDEs (phosphodiesterases) regulate cellular levels of cAMP and cGMP by controlling the rate of degradation. Several mammalian PDE isoforms possess N-terminal GAF (found in cGMP PDEs, Anabaena adenylate cyclases and Escherichia coli FhlA; where FhlA is formate hydrogen lyase transcriptional activator)...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST0351032

    authors: Cann MJ

    更新日期:2007-11-01 00:00:00

  • How cytidylyltransferase uses an amphipathic helix to sense membrane phospholipid composition.

    abstract::CT responds to properties of PC-depleted membranes: increased negative charge density, which concentrates the enzyme at the membrane surface, and lipid packing perturbations, which create holes in the membrane surface into which the hydrophobic side chains of the amphipathic helix of domain M can intercalate. The PC-d...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/bst0260539

    authors: Cornell RB

    更新日期:1998-08-01 00:00:00

  • Inspired by lipids: the Morton Lecture Award Presentation.

    abstract::Lipids are key molecules for membranes, energy storage and signalling. I have been privileged to have worked in such a diverse field and in organisms from microbes to humans. Here I will describe some of those contrasting areas which range from environmental impacts to food production and on to human health. It has be...

    journal_title:Biochemical Society transactions

    pub_type: 历史文章,杂志文章,评审

    doi:10.1042/BST20160406

    authors: Harwood JL

    更新日期:2017-04-15 00:00:00

  • Apoptosis-like programmed cell death in the grey mould fungus Botrytis cinerea: genes and their role in pathogenicity.

    abstract::A considerable number of fungal homologues of human apoptotic genes have been identified in recent years. Nevertheless, we are far from being able to connect the different pieces and construct a primary structure of the fungal apoptotic regulatory network. To get a better picture of the available fungal components, we...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST0391493

    authors: Shlezinger N,Doron A,Sharon A

    更新日期:2011-10-01 00:00:00

  • Chromosome positioning is largely unaffected in lymphoblastoid cell lines containing emerin or A-type lamin mutations.

    abstract::Gene-poor human chromosomes are reproducibly found at the nuclear periphery in proliferating cells. There are a number of inner nuclear envelope proteins that may have roles in chromosome location and anchorage, e.g. emerin and A-type lamins. In the last decade, a number of diseases associated with tissue degeneration...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章

    doi:10.1042/BST20051438

    authors: Meaburn KJ,Levy N,Toniolo D,Bridger JM

    更新日期:2005-12-01 00:00:00

  • The role of Bradyrhizobium japonicum nitric oxide reductase in nitric oxide detoxification in soya bean root nodules.

    abstract::The identification of nitric oxide-bound leghaemoglobin within soya bean nodules has led to the question of how Bradyrhizobium japonicum bacteroids overcome the toxicity of this nitric oxide. It has previously been shown that one candidate for nitric oxide detoxification, the respiratory nitric oxide reductase, is exp...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST0340195

    authors: Meakin GE,Jepson BJ,Richardson DJ,Bedmar EJ,Delgado MJ

    更新日期:2006-02-01 00:00:00

  • Nuclear motors and nuclear structures containing A-type lamins and emerin: is there a functional link?

    abstract::Rapid interphase chromosome territory repositioning appears to function through the action of nuclear myosin and actin, in a nuclear motor complex. We have found that chromosome repositioning when cells leave the cell cycle is not apparent in cells that have mutant lamin A or that are lacking emerin. We discuss the po...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST0361384

    authors: Mehta IS,Elcock LS,Amira M,Kill IR,Bridger JM

    更新日期:2008-12-01 00:00:00

  • Incorporation of iron-sulphur clusters in membrane-bound proteins.

    abstract::The completely sequenced genome of the cyanobacterium Synechocystis PCC 6803 contains several open reading frames, of which the deduced amino acid sequences show similarities to proteins known to be involved in FeS cluster synthesis of nitrogenase (Nif proteins) and other FeS proteins (Isc proteins). In this article, ...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/bst0290418

    authors: Seidler A,Jaschkowitz K,Wollenberg M

    更新日期:2001-08-01 00:00:00