Isolation, phylogeny and evolution of the SymRK gene in the legume genus Lupinus L.

Abstract:

:SymRK is one of the key genes involved in initial steps of legume symbiotic association with fungi (mycorrhization) and nitrogen-fixing bacteria (nodulation). A large portion of the sequence encoding the extracellular domain of SYMRK was obtained for 38 lupine accessions and 2 outgroups in order to characterize this region, to evaluate its phylogenetic utility, and to examine whether its molecular evolutionary pattern is correlated with rhizobial diversity and specificity in Lupinus. The data suggested that, in Lupinus, SymRK is a single copy gene that shows good phylogenetic potential. Accordingly, SymRK provided additional support to previous molecular phylogenies, and shed additional light on relationships within the Old World group of Lupinus, especially among the African species. Similar to results of other studies, analyses of SymRK sequences were unable to resolve placement of the Florida unifoliolate lineage, whose relationship was weakly supported to either the Old or the New World lupines. Our data are consistent with strong purifying selection operating on SymRK in Lupinus, preserving rather than diversifying its function. Thus, although SymRK was demonstrated to be a vital gene in the early stages of the root-bacterial symbiotic associations, no evidence from present analyses indicate that this gene is involved in changes in rhizobial specificity in Lupinus.

journal_name

Mol Phylogenet Evol

authors

Mahé F,Markova D,Pasquet R,Misset MT,Aïnouche A

doi

10.1016/j.ympev.2011.04.017

subject

Has Abstract

pub_date

2011-07-01 00:00:00

pages

49-61

issue

1

eissn

1055-7903

issn

1095-9513

pii

S1055-7903(11)00209-0

journal_volume

60

pub_type

杂志文章
  • Molecular phylogenetics and historical biogeography of Hawaiian Dryopteris (Dryopteridaceae).

    abstract::The fern genus Dryopteris (Dryopteridaceae) is represented in the Hawaiian Islands by 18 endemic taxa and one non-endemic, native species. The goals of this study were to determine whether Dryopteris in Hawai'i is monophyletic and to infer the biogeographical origins of Hawaiian Dryopteris by determining the geographi...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2004.11.001

    authors: Geiger JM,Ranker TA

    更新日期:2005-02-01 00:00:00

  • Convergent evolution of morphological and ecological traits in the open-habitat chat complex (Aves, Muscicapidae: Saxicolinae).

    abstract::Open-habitat chats (genera Myrmecocichla, Cercomela, Oenanthe and relative) are a morphologically and ecologically cohesive group of genera with unclear phylogenetic relationships. They are distributed mostly in open, arid and/or rocky habitats of Africa and Eurasia. Here, we present the most comprehensive molecular p...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2012.05.011

    authors: Aliabadian M,Kaboli M,Förschler MI,Nijman V,Chamani A,Tillier A,Prodon R,Pasquet E,Ericson PG,Zuccon D

    更新日期:2012-10-01 00:00:00

  • Phylogenetic relationships within genus Leuciscus (Pisces, Cyprinidae) in Portuguese fresh waters, based on mitochondrial DNA cytochrome b sequences.

    abstract::To investigate phylogenetic relationships among Leuciscus species occurring in Portuguese inland waters, the cytochrome b gene was sequenced from representatives of the main rivers. This study supports the recognition of the species level for L. pyrenaicus, including populations from the southern Portuguese drainages ...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1006/mpev.1997.0429

    authors: Brito RM,Briolay J,Galtier N,Bouvet Y,Coelho MM

    更新日期:1997-12-01 00:00:00

  • A novel BLAST-Based Relative Distance (BBRD) method can effectively group members of protein arginine methyltransferases and suggest their evolutionary relationship.

    abstract::We developed a novel BLAST-Based Relative Distance (BBRD) method by Pearson's correlation coefficient to avoid the problems of tedious multiple sequence alignment and complicated outgroup selection. We showed its application on reconstructing reliable phylogeny for nucleotide and protein sequences as exemplified by th...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2014.12.002

    authors: Wang YC,Wang JD,Chen CH,Chen YW,Li C

    更新日期:2015-03-01 00:00:00

  • On the classification, evolution and biogeography of terrestrial haemadipsoid leeches (Hirudinida: Arhynchobdellida: Hirudiniformes).

    abstract::A scourge of tropical and subtropical jungles, bloodfeeding terrestrial leeches of Haemadipsidae have long confused systematists and defied sensible biogeographic interpretation. The family Haemadipsidae usually includes problematic taxa that neither fit the typical IndoPacific distribution of the group, nor properly ...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2007.09.006

    authors: Borda E,Oceguera-Figueroa A,Siddall ME

    更新日期:2008-01-01 00:00:00

  • A multilocus molecular phylogeny of Fasciolariidae (Neogastropoda: Buccinoidea).

    abstract::The neogastropod family Fasciolariidae Gray, 1853 - tulips, horse-conchs, spindles, etc., comprises important representatives of tropical and subtropical molluscan assemblages, with over 500 species in the subfamilies Fasciolariinae Gray, 1853, Fusininae Wrigley, 1927 and Peristerniinae Tryon, 1880. Fasciolariids have...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2016.03.025

    authors: Couto DR,Bouchet P,Kantor YI,Simone LRL,Giribet G

    更新日期:2016-06-01 00:00:00

  • A phylogeny of the northern temperate leafy liverwort genus Scapania (Scapaniaceae, Jungermanniales).

    abstract::Scapania is a northern temperate genus with a few disjunctions in the south. Despite receiving considerable attention, the supraspecific classification of this genus remains unsatisfactorily solved. We use three molecular markers (nrITS, cpDNA trnL-F region, atpB-rbcL spacer) and 175 accessions belonging to 50 species...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2011.11.029

    authors: Heinrichs J,Bombosch A,Feldberg K,Kreier HP,Hentschel J,Eckstein J,Long D,Zhu RL,Schäfer-Verwimp A,Schmidt AR,Shaw B,Shaw AJ,Váňa J

    更新日期:2012-03-01 00:00:00

  • Incongruent plastid and nuclear DNA phylogenies reveal ancient intergeneric hybridization in Pilosella hawkweeds (Hieracium, Cichorieae, Asteraceae).

    abstract::Phylogenetic relationships for Hieracium subgen. Pilosella were inferred from chloroplast (trnT-trnL, matK) and nuclear (ITS) sequence data. Chloroplast markers revealed the existence of two divergent haplotype groups within the subgenus that did not correspond to presumed relationships. Furthermore, chloroplast haplo...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2006.07.004

    authors: Fehrer J,Gemeinholzer B,Chrtek J Jr,Bräutigam S

    更新日期:2007-02-01 00:00:00

  • Integrative description of bisexual Paramacrobiotus experimentalis sp. nov. (Macrobiotidae) from republic of Madagascar (Africa) with microbiome analysis.

    abstract::In a moss samples collected on Madagascar two populations of Paramacrobiotus experimentalis sp. nov. were found. Paramacrobiotus experimentalis sp. nov. with the presence of a microplacoid and areolatus type of eggs is similar to Pam. danielae, Pam. garynahi, Pam. hapukuensis, Pam. peteri, Pam. rioplatensis and Pam. s...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2019.106730

    authors: Kaczmarek Ł,Roszkowska M,Poprawa I,Janelt K,Kmita H,Gawlak M,Fiałkowska E,Mioduchowska M

    更新日期:2020-04-01 00:00:00

  • Monophyly and relationships of wrens (Aves: Troglodytidae): a congruence analysis of heterogeneous mitochondrial and nuclear DNA sequence data.

    abstract::The wrens (Aves: Troglodytidae) are a group of primarily New World insectivorous birds, the monophyly of which has long been recognized, but whose intergeneric relationships are essentially unknown. In order to test the monophyly of the group, and to attempt to resolve relationships among genera within it, sequences f...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2003.08.005

    authors: Barker FK

    更新日期:2004-05-01 00:00:00

  • Return flight to the Canary Islands--the key role of peripheral populations of Afrocanarian blue tits (Aves: Cyanistes teneriffae) in multi-gene reconstructions of colonization pathways.

    abstract::Afrocanarian blue tits (Cyanistes teneriffae) have a scattered distribution on the Canary Islands and on the North African continent. To date, the Canary Islands have been considered the species' main Pleistocene evolutionary center, but their colonization pathways remain uncertain. We set out to reconstruct a dated m...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2013.02.010

    authors: Päckert M,Martens J,Hering J,Kvist L,Illera JC

    更新日期:2013-05-01 00:00:00

  • Molecular taxonomy and phylogenetic relationships among Australian Nasutitermes and Tumulitermes genera (Isoptera, Nasutitermitinae) inferred from mitochondrial COII and 16S sequences.

    abstract::The subfamily Nasutitermitinae Hare (1937) is a tropical and subtropical group, generally considered as the most specialised subfamily of Termitidae. To highlight some taxonomic inconsistencies, the phylogenetic relationships among seven Australian species, morphologically ascribed to the genera Nasutitermes and Tumul...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2007.07.014

    authors: Bergamaschi S,Dawes-Gromadzki TZ,Luchetti A,Marini M,Mantovani B

    更新日期:2007-12-01 00:00:00

  • Differential expansion of the merozoite surface protein (msp)-7 gene family in Plasmodium species under a birth-and-death model of evolution.

    abstract::MSP-7 is a surface protein expressed by the Plasmodium merozoite as part of a protein-complex involved in initial interaction between merozoite and erythrocyte. Contigs of seven Plasmodium species were analyzed in order to identify all msp-7 family genes. The search identified annotated and unannotated open reading fr...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2010.02.017

    authors: Garzón-Ospina D,Cadavid LF,Patarroyo MA

    更新日期:2010-05-01 00:00:00

  • Phylogeny, biogeography and evolution of Triglochin L. (Juncaginaceae)--morphological diversification is linked to habitat shifts rather than to genetic diversification.

    abstract::A species-level phylogeny is presented for Triglochin, the largest genus of Juncaginaceae (Alismatales) comprising about 30 species of annual and perennial herbs. Triglochin has an almost cosmopolitan distribution with Australia as centre of species diversity. Trans-Atlantic and trans-African disjunctions exist in the...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2014.10.014

    authors: von Mering S,Kadereit JW

    更新日期:2015-02-01 00:00:00

  • Geographic isolation drives divergence of uncorrelated genetic and song variation in the Ruddy-capped Nightingale-Thrush (Catharus frantzii; Aves: Turdidae).

    abstract::Montane barriers influence the evolutionary history of lineages by promoting isolation of populations. The effects of these historical processes are evident in patterns of differentiation among extant populations, which are often expressed as genetic and behavioral variation between populations. We investigated the ef...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2015.08.017

    authors: Ortiz-Ramírez MF,Andersen MJ,Zaldívar-Riverón A,Ornelas JF,Navarro-Sigüenza AG

    更新日期:2016-01-01 00:00:00

  • Mysteries of host switching: Diversification and host specificity in rodent-coccidia associations.

    abstract::Recent studies show that host switching is much more frequent than originally believed and constitutes an important driver in evolution of host-parasite associations. However, its frequency and ecological mechanisms at the population level have been rarely investigated. We address this issue by analyzing phylogeny and...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2018.05.009

    authors: Mácová A,Hoblíková A,Hypša V,Stanko M,Martinů J,Kvičerová J

    更新日期:2018-10-01 00:00:00

  • Estimating divergence dates and evaluating dating methods using phylogenomic and mitochondrial data in squamate reptiles.

    abstract::Recently, phylogenetics has expanded to routinely include estimation of clade ages in addition to their relationships. Various dating methods have been used, but their relative performance remains understudied. Here, we generate and assemble an extensive phylogenomic data set for squamate reptiles (lizards and snakes)...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2012.08.018

    authors: Mulcahy DG,Noonan BP,Moss T,Townsend TM,Reeder TW,Sites JW Jr,Wiens JJ

    更新日期:2012-12-01 00:00:00

  • Support for the hypothesis of anguimorph ancestry for the suborder Serpentes from phylogenetic analysis of mitochondrial DNA sequences.

    abstract::Snakes represent one of the most ubiquitous and successful groups of terrestrial vertebrates; however, many aspects of their evolutionary relationships remain uncertain. Previous research, which utilized morphological and immunological data, has not resolved the origin of snakes or clearly delineated the relationships...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1006/mpev.1995.1010

    authors: Forstner MR,Davis SK,Arévalo E

    更新日期:1995-03-01 00:00:00

  • More data, fewer shifts: molecular insights into the evolution of the spinning apparatus in non-orb-weaving spiders.

    abstract::All spiders produce silk and use it for various functions throughout their lives, but not all spiders produce the same silks, or use them for the same functions. These functions may include building shelters, protecting eggs, and trapping prey. The "RTA clade" of spiders (grass spiders, jumping-spiders, wolf spiders, ...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2007.08.008

    authors: Spagna JC,Gillespie RG

    更新日期:2008-01-01 00:00:00

  • The PNarec method for detection of ancient recombinations through phylogenetic network analysis.

    abstract::Recombinations are known to disrupt bifurcating tree structure of gene genealogies. Although recently occurred recombinations are easily detectable by using conventional methods, recombinations may have occurred at any time. We devised a new method for detecting ancient recombinations through phylogenetic network anal...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2012.09.015

    authors: Saitou N,Kitano T

    更新日期:2013-02-01 00:00:00

  • A comparison of populations of island and adjacent mainland species of Caribbean Selenops (Araneae: Selenopidae) spiders.

    abstract::The role of the landscape in structuring populations has been the focus of numerous studies, in particular, the extent to which islands provide opportunities for isolation, and the consistency of such an effect across lineages. The current study examines this phenomenon using a series of relatively widespread taxa, al...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2009.10.012

    authors: Crews SC,Puente-Rolón AR,Rutstein E,Gillespie RG

    更新日期:2010-03-01 00:00:00

  • Molecular markers reveal genetic isolation and phylogeography of the S and F intersterility groups of the wood-decay fungus Heterobasidion annosum.

    abstract::The root-rot fungus Heterobasidion annosum (Fr.) Bref. species complex consists of three intersterility groups (S, F, and P), separated by their host affinity. The phylogenetic relationship of the species complex was studied, with the focus on the S and F groups, by comparing DNA sequences of four nuclear gene fragmen...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/s1055-7903(03)00087-3

    authors: Johannesson H,Stenlid J

    更新日期:2003-10-01 00:00:00

  • Towards a molecular phylogeny of Mollusks: bivalves' early evolution as revealed by mitochondrial genes.

    abstract::Despite huge fossil, morphological and molecular data, bivalves' early evolutionary history is still a matter of debate: recently, established phylogeny has been mostly challenged by DNA studies, and little agreement has been reached in literature, because of a substantial lack of widely-accepted methodological approa...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2010.08.032

    authors: Plazzi F,Passamonti M

    更新日期:2010-11-01 00:00:00

  • Variation in ribosomal and mitochondrial DNA sequences demonstrates the existence of intraspecific groups in Paramecium multimicronucleatum (Ciliophora, Oligohymenophorea).

    abstract::This is the first phylogenetic study of the intraspecific variability within Paramecium multimicronucleatum with the application of two-loci analysis (ITS1-5.8S-ITS2-5'LSU rDNA and COI mtDNA) carried out on numerous strains originated from different continents. The species has been shown to have a complex structure of...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2012.01.024

    authors: Tarcz S,Potekhin A,Rautian M,Przyboś E

    更新日期:2012-05-01 00:00:00

  • Discovery of an old, archipelago-wide, endemic radiation of Philippine snakes.

    abstract::The extraordinarily rich land vertebrate biodiversity of the Philippines includes at least 112 species of terrestrial snakes (74% of which are endemic to the archipelago) in 41 genera (12% endemic). Endemic Philippine snake genera include Cyclocorus (two species), Hemibungarus (three species), Hologerrhum (two species...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2017.11.004

    authors: Weinell JL,Brown RM

    更新日期:2018-02-01 00:00:00

  • Molecular phylogeny of the family Pectinidae (Mollusca: Bivalvia) based on mitochondrial 16S and 12S rRNA genes.

    abstract::Pectinidae is a large bivalve family characterised by almost circular, flat shells. Species are distributed worldwide and fall into three life-styles: swimming, byssally attached to hard substrates, and cemented to rocks with one valve. Despite these very different life strategies, pectinid shells are highly conservat...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2003.07.003

    authors: Barucca M,Olmo E,Schiaparelli S,Canapa A

    更新日期:2004-04-01 00:00:00

  • A phylogenetic analysis of the major groups of catfishes (Teleostei: Siluriformes) using rag1 and rag2 nuclear gene sequences.

    abstract::Higher-level relationships among catfishes were investigated by parsimony, maximum likelihood and Bayesian analyses of two nuclear genes across 110 catfish species representing 36 of 37 families and Conorhynchos (family incertae sedis). Analysis of 3660 aligned base pairs from the rag1 and rag2 genes confirms monophyl...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2006.05.044

    authors: Sullivan JP,Lundberg JG,Hardman M

    更新日期:2006-12-01 00:00:00

  • Diversification and repeated morphological transitions in endoparasitic cnidarians (Myxozoa: Malacosporea).

    abstract::Malacosporeans are a poorly known myxozoan clade that uniquely demonstrates a tissue level of organisation. Thus, when exploiting their invertebrate hosts (freshwater bryozoans) they occur as non-motile sacs or vermiform stages capable of active swimming. We combine phylogenetic analyses of SSU and LSU rDNA with morph...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2014.03.010

    authors: Hartikainen H,Gruhl A,Okamura B

    更新日期:2014-07-01 00:00:00

  • Species-level phylogeography and evolutionary history of the hyperdiverse marine gastropod genus Conus.

    abstract::Phylogenetic and paleontological analyses are combined to reveal patterns of species origination and divergence and to define the significance of potential and actual barriers to dispersal in Conus, a species-rich genus of predatory gastropods distributed throughout the world's tropical oceans. Species-level phylogene...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2004.09.012

    authors: Duda TF Jr,Kohn AJ

    更新日期:2005-02-01 00:00:00

  • Phylogeny of the Polytrichales (Bryophyta) based on simultaneous analysis of molecular and morphological data.

    abstract::Phylogenetic analyses of Polytrichales were conducted using morphology and sequence data from the chloroplast genes rbcL and rps4 plus the trnL-F gene region, part of the mitochondrial nad5 and the nuclear-encoded 18S rDNA. Our analyses included 46 species representing all genera of Polytrichales. Phylogenetic trees w...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2003.11.003

    authors: Hyvönen J,Koskinen S,Merrill GL,Hedderson TA,Stenroos S

    更新日期:2004-06-01 00:00:00