Diffusion imaging of whole, post-mortem human brains on a clinical MRI scanner.

Abstract:

:Diffusion imaging of post mortem brains has great potential both as a reference for brain specimens that undergo sectioning, and as a link between in vivo diffusion studies and "gold standard" histology/dissection. While there is a relatively mature literature on post mortem diffusion imaging of animals, human brains have proven more challenging due to their incompatibility with high-performance scanners. This study presents a method for post mortem diffusion imaging of whole, human brains using a clinical 3-Tesla scanner with a 3D segmented EPI spin-echo sequence. Results in eleven brains at 0.94 × 0.94 × 0.94 mm resolution are presented, and in a single brain at 0.73 × 0.73 × 0.73 mm resolution. Region-of-interest analysis of diffusion tensor parameters indicate that these properties are altered compared to in vivo (reduced diffusivity and anisotropy), with significant dependence on post mortem interval (time from death to fixation). Despite these alterations, diffusion tractography of several major tracts is successfully demonstrated at both resolutions. We also report novel findings of cortical anisotropy and partial volume effects.

journal_name

Neuroimage

journal_title

NeuroImage

authors

Miller KL,Stagg CJ,Douaud G,Jbabdi S,Smith SM,Behrens TEJ,Jenkinson M,Chance SA,Esiri MM,Voets NL,Jenkinson N,Aziz TZ,Turner MR,Johansen-Berg H,McNab JA

doi

10.1016/j.neuroimage.2011.03.070

subject

Has Abstract

pub_date

2011-07-01 00:00:00

pages

167-181

issue

1

eissn

1053-8119

issn

1095-9572

pii

S1053-8119(11)00349-1

journal_volume

57

pub_type

杂志文章
  • Human cortical circuits for central executive function emerge by theta phase synchronization.

    abstract::Dynamic networking of brain regions is suggested to be one of the key factors involved in various brain computations. Central executive function typically requires instantaneous coordination among the medial prefrontal regions and other distant regions, depending on the on-going task situation. In human scalp-recorded...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2007.02.026

    authors: Mizuhara H,Yamaguchi Y

    更新日期:2007-05-15 00:00:00

  • Thalamic cholinergic innervation makes a specific bottom-up contribution to signal detection: Evidence from Parkinson's disease patients with defined cholinergic losses.

    abstract::Successful behavior depends on the ability to detect and respond to relevant cues, especially under challenging conditions. This essential component of attention has been hypothesized to be mediated by multiple neuromodulator systems, but the contributions of individual systems (e.g., cholinergic, dopaminergic) have r...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2017.02.006

    authors: Kim K,Müller MLTM,Bohnen NI,Sarter M,Lustig C

    更新日期:2017-04-01 00:00:00

  • Visual feature and conjunction searches of equal difficulty engage only partially overlapping frontoparietal networks.

    abstract::According to a classical view of visual object recognition, targets are detected "pre-attentively" if they carry unique features, whereas attention has to be deployed serially to object locations for feature binding if the targets can be distinguished from distracters only in terms of their feature conjunctions. Consi...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1006/nimg.2001.0951

    authors: Donner TH,Kettermann A,Diesch E,Ostendorf F,Villringer A,Brandt SA

    更新日期:2002-01-01 00:00:00

  • MRI correlates of pathology in parkinsonism: segmented inversion recovery ratio imaging (SIRRIM).

    abstract::The two commonest, clinically well-defined, forms of parkinsonism are idiopathic Parkinson's disease (PD) and progressive supranuclear palsy (PSP). Both involve, inter alia, pathological changes in the substantia nigra pars compacta (SN(C)). In PD there is neuronal loss with associated Lewy body pathology and microgli...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2003.07.012

    authors: Hutchinson M,Raff U,Lebedev S

    更新日期:2003-11-01 00:00:00

  • The effect of concurrent reward on aversive information processing in the brain.

    abstract::Neural networks for the processing of appetitive and aversive information, in isolation, have been well characterized. However, how the brain integrates competing signals associated with simultaneous appetitive and aversive information is less clear. In particular, it is unknown how the presence of concurrent reward m...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2020.116890

    authors: Kim AJ,Anderson BA

    更新日期:2020-08-15 00:00:00

  • Covariance PET patterns in early Alzheimer's disease and subjects with cognitive impairment but no dementia: utility in group discrimination and correlations with functional performance.

    abstract::Although multivariate analytic techniques might identify diagnostic patterns that are not captured by univariate methods, they have rarely been used to study the neural correlates of Alzheimer's disease (AD) or cognitive impairment. Nonquantitative H2(15)O PET scans were acquired during rest in 17 probable AD subjects...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2004.04.032

    authors: Scarmeas N,Habeck CG,Zarahn E,Anderson KE,Park A,Hilton J,Pelton GH,Tabert MH,Honig LS,Moeller JR,Devanand DP,Stern Y

    更新日期:2004-09-01 00:00:00

  • The link between callosal thickness and intelligence in healthy children and adolescents.

    abstract::The link between brain structure and intelligence is a well-investigated topic, but existing analyses have mainly focused on adult samples. Studies in healthy children and adolescents are rare, and normative data specifically addressing the association between corpus callosum morphology and intellectual abilities are ...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2010.09.083

    authors: Luders E,Thompson PM,Narr KL,Zamanyan A,Chou YY,Gutman B,Dinov ID,Toga AW

    更新日期:2011-02-01 00:00:00

  • Anxiolytic-like effect of pregabalin on unconditioned fear in the rat: an autoradiographic brain perfusion mapping and functional connectivity study.

    abstract::Clinical and preclinical evidence suggests anxiolytic-like efficacy of pregabalin (PGB, Lyrica). However, its mechanism of action remains under investigation. The current study applied [(14)C]-iodoantipyrine cerebral blood flow (CBF) mapping to examine the effect of PGB on neural substrates underlying unconditioned fe...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2011.11.047

    authors: Wang Z,Pang RD,Hernandez M,Ocampo MA,Holschneider DP

    更新日期:2012-02-15 00:00:00

  • Ten simple rules for predictive modeling of individual differences in neuroimaging.

    abstract::Establishing brain-behavior associations that map brain organization to phenotypic measures and generalize to novel individuals remains a challenge in neuroimaging. Predictive modeling approaches that define and validate models with independent datasets offer a solution to this problem. While these methods can detect ...

    journal_title:NeuroImage

    pub_type: 杂志文章,评审

    doi:10.1016/j.neuroimage.2019.02.057

    authors: Scheinost D,Noble S,Horien C,Greene AS,Lake EM,Salehi M,Gao S,Shen X,O'Connor D,Barron DS,Yip SW,Rosenberg MD,Constable RT

    更新日期:2019-06-01 00:00:00

  • In vivo diffusion tensor imaging of the human optic chiasm at sub-millimeter resolution.

    abstract::In this work we report findings from an in vivo diffusion tensor imaging (DTI) study of the human optic chiasm at sub-millimeter voxel resolution. Data were collected at 3 T using a diffusion-weighted radial-FSE sequence, which provides images free from typical magnetic susceptibility artifacts. The general DTI featur...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2009.05.098

    authors: Sarlls JE,Pierpaoli C

    更新日期:2009-10-01 00:00:00

  • Extensive training leads to temporal and spatial shifts of cortical activity underlying visual category selectivity.

    abstract::The human visual system is able to distinguish naturally occurring categories with exceptional speed and accuracy. At the same time, it exhibits substantial plasticity, permitting the seamless and fast learning of entirely novel categories. Here we investigate the interplay of these two processes by asking how categor...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2016.03.066

    authors: Kietzmann TC,Ehinger BV,Porada D,Engel AK,König P

    更新日期:2016-07-01 00:00:00

  • Task-dependent modulation of the visual sensory thalamus assists visual-speech recognition.

    abstract::The cerebral cortex modulates early sensory processing via feed-back connections to sensory pathway nuclei. The functions of this top-down modulation for human behavior are poorly understood. Here, we show that top-down modulation of the visual sensory thalamus (the lateral geniculate body, LGN) is involved in visual-...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2018.05.032

    authors: Díaz B,Blank H,von Kriegstein K

    更新日期:2018-09-01 00:00:00

  • The influence of stimulus format on drawing--a functional imaging study of decision making in portrait drawing.

    abstract::To copy a natural visual image as a line drawing, visual identification and extraction of features in the image must be guided by top-down decisions, and is usually influenced by prior knowledge. In parallel with other behavioral studies testing the relationship between eye and hand movements when drawing, we report h...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2014.08.015

    authors: Miall RC,Nam SH,Tchalenko J

    更新日期:2014-11-15 00:00:00

  • Voxel-based cortical thickness measurements in MRI.

    abstract::The thickness of the cerebral cortex can provide valuable information about normal and abnormal neuroanatomy. High resolution MRI together with powerful image processing techniques has made it possible to perform these measurements automatically over the whole brain. Here we present a method for automatically generati...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2008.01.027

    authors: Hutton C,De Vita E,Ashburner J,Deichmann R,Turner R

    更新日期:2008-05-01 00:00:00

  • On clustering fMRI time series.

    abstract::Analysis of fMRI time series is often performed by extracting one or more parameters for the individual voxels. Methods based, e.g., on various statistical tests are then used to yield parameters corresponding to probability of activation or activation strength. However, these methods do not indicate whether sets of v...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1006/nimg.1998.0391

    authors: Goutte C,Toft P,Rostrup E,Nielsen F,Hansen LK

    更新日期:1999-03-01 00:00:00

  • Working memory component processes: isolating BOLD signal changes.

    abstract::The chronology of the component processes subserving working memory (WM) and hemodynamic response lags has hindered the use of fMRI for exploring neural substrates of WM. In the present study, however, participants completed full trials that involved encoding two or six letters, maintaining the memory set over a delay...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2009.08.054

    authors: Motes MA,Rypma B

    更新日期:2010-01-15 00:00:00

  • A real-time marker of object-based attention in the human brain. A possible component of a "gate-keeping mechanism" performing late attentional selection in the Ventro-Lateral Prefrontal Cortex.

    abstract::The decision to process an incoming stimulus attentively - and to trigger a follow-up cascade of high-level processes - is strategic for the human brain as it becomes transiently unavailable to subsequent stimulus processing. In this study, we set to identify brain networks that carry out such evaluations. We therefor...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2020.116574

    authors: Perrone-Bertolotti M,El Bouzaïdi Tiali S,Vidal JR,Petton M,Croize AC,Deman P,Rheims S,Minotti L,Bhattacharjee M,Baciu M,Kahane P,Lachaux JP

    更新日期:2020-04-15 00:00:00

  • Spatiotemporal reconstruction of auditory steady-state responses to acoustic amplitude modulations: Potential sources beyond the auditory pathway.

    abstract::Investigating the neural generators of auditory steady-state responses (ASSRs), i.e., auditory evoked brain responses, with a wide range of screening and diagnostic applications, has been the focus of various studies for many years. Most of these studies employed a priori assumptions regarding the number and location ...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2017.01.032

    authors: Farahani ED,Goossens T,Wouters J,van Wieringen A

    更新日期:2017-03-01 00:00:00

  • Developmental neural networks in children performing a Categorical N-Back Task.

    abstract::The prefrontal and temporal networks subserving object working memory tasks in adults have been reported as immature in young children; yet children are adequately capable of performing such tasks. We investigated the basis of this apparent contradiction using a complex object working memory task, a Categorical n-back...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2006.07.028

    authors: Ciesielski KT,Lesnik PG,Savoy RL,Grant EP,Ahlfors SP

    更新日期:2006-11-15 00:00:00

  • Multifaceted genomic risk for brain function in schizophrenia.

    abstract::Recently, deriving candidate endophenotypes from brain imaging data has become a valuable approach to study genetic influences on schizophrenia (SZ), whose pathophysiology remains unclear. In this work we utilized a multivariate approach, parallel independent component analysis, to identify genomic risk components ass...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2012.03.022

    authors: Chen J,Calhoun VD,Pearlson GD,Ehrlich S,Turner JA,Ho BC,Wassink TH,Michael AM,Liu J

    更新日期:2012-07-16 00:00:00

  • Computing moment-to-moment BOLD activation for real-time neurofeedback.

    abstract::Estimating moment-to-moment changes in blood oxygenation level dependent (BOLD) activation levels from functional magnetic resonance imaging (fMRI) data has applications for learned regulation of regional activation, brain state monitoring, and brain-machine interfaces. In each of these contexts, accurate estimation o...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2010.07.060

    authors: Hinds O,Ghosh S,Thompson TW,Yoo JJ,Whitfield-Gabrieli S,Triantafyllou C,Gabrieli JD

    更新日期:2011-01-01 00:00:00

  • Dispersion of functional gradients across the adult lifespan.

    abstract::Ageing is commonly associated with changes to segregation and integration of functional brain networks, but, in isolation, current network-based approaches struggle to elucidate changes across the many axes of functional organisation. However, the advent of gradient mapping techniques in neuroimaging provides a new me...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2020.117299

    authors: Bethlehem RAI,Paquola C,Seidlitz J,Ronan L,Bernhardt B,Consortium CC,Tsvetanov KA

    更新日期:2020-11-15 00:00:00

  • Predicting intrinsic brain activity.

    abstract::Multivariate supervised learning methods exhibit a remarkable ability to decode externally driven sensory, behavioral, and cognitive states from functional neuroimaging data. Although they are typically applied to task-based analyses, supervised learning methods are equally applicable to intrinsic effective and functi...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2013.05.072

    authors: Craddock RC,Milham MP,LaConte SM

    更新日期:2013-11-15 00:00:00

  • Dynamic subcortical blood flow during male sexual activity with ecological validity: a perfusion fMRI study.

    abstract::This study used arterial spin labeling (ASL) fMRI to measure brain perfusion in a group of healthy men under conditions that closely resembled customary sexual behavior. Serial perfusion measures for 30 min during two self-limited periods of partnered penis stimulation, and during post-stimulatory periods, revealed no...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2009.12.034

    authors: Georgiadis JR,Farrell MJ,Boessen R,Denton DA,Gavrilescu M,Kortekaas R,Renken RJ,Hoogduin JM,Egan GF

    更新日期:2010-03-01 00:00:00

  • Non-diffeomorphic registration of brain tumor images by simulating tissue loss and tumor growth.

    abstract::Although a variety of diffeomorphic deformable registration methods exist in the literature, application of these methods in the presence of space-occupying lesions is not straightforward. The motivation of this work is spatial normalization of MR images from patients with brain tumors in a common stereotaxic space, a...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2009.01.051

    authors: Zacharaki EI,Hogea CS,Shen D,Biros G,Davatzikos C

    更新日期:2009-07-01 00:00:00

  • Functional connectivity dynamics: modeling the switching behavior of the resting state.

    abstract::Functional connectivity (FC) sheds light on the interactions between different brain regions. Besides basic research, it is clinically relevant for applications in Alzheimer's disease, schizophrenia, presurgical planning, epilepsy, and traumatic brain injury. Simulations of whole-brain mean-field computational models ...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2014.11.001

    authors: Hansen EC,Battaglia D,Spiegler A,Deco G,Jirsa VK

    更新日期:2015-01-15 00:00:00

  • Phase-amplitude coupling at the organism level: The amplitude of spontaneous alpha rhythm fluctuations varies with the phase of the infra-slow gastric basal rhythm.

    abstract::A fundamental feature of the temporal organization of neural activity is phase-amplitude coupling between brain rhythms at different frequencies, where the amplitude of a higher frequency varies according to the phase of a lower frequency. Here, we show that this rule extends to brain-organ interactions. We measured b...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2016.08.043

    authors: Richter CG,Babo-Rebelo M,Schwartz D,Tallon-Baudry C

    更新日期:2017-02-01 00:00:00

  • The importance of distributed sampling in blocked functional magnetic resonance imaging designs.

    abstract::In this study we demonstrate the importance of distributed sampling of peristimulus time in blocked design fMRI studies. Distributed sampling ensures all the components of an event-related hemodynamic response are sampled and avoids the bias incurred when stimulus presentation is time-locked to data acquisition. We fo...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1006/nimg.2002.1242

    authors: Veltman DJ,Mechelli A,Friston KJ,Price CJ

    更新日期:2002-11-01 00:00:00

  • Effects of lactate on the early visual cortex of non-human primates, investigated by pharmaco-MRI and neurochemical analysis.

    abstract::In contrast to the limited use of functional magnetic resonance imaging (fMRI) in clinical diagnostics, it is currently a mainstay of neuroimaging in clinical and basic brain research. However, its non-invasive use in combination with its high temporal and spatial resolution would make fMRI a perfect diagnostic tool. ...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2012.02.082

    authors: von Pföstl V,Li J,Zaldivar D,Goense J,Zhang X,Serr N,Logothetis NK,Rauch A

    更新日期:2012-05-15 00:00:00

  • The missing link: analogous human and primate cortical gamma oscillations.

    abstract::Recent animal studies highlighting the relationship between functional imaging signals and the underlying neuronal activity have revealed the potential capabilities of non-invasive methods. However, the valuable exchange of information between animal and human studies remains restricted by the limited evidence of dire...

    journal_title:NeuroImage

    pub_type: 临床试验,杂志文章,随机对照试验

    doi:10.1016/j.neuroimage.2005.01.009

    authors: Hall SD,Holliday IE,Hillebrand A,Singh KD,Furlong PL,Hadjipapas A,Barnes GR

    更新日期:2005-05-15 00:00:00