Abstract:
:Three genetic variants of grapevine leafroll-associated virus 3 (GLRaV-3) were identified in vineyards of the Western Cape, South Africa. The GLRaV-3 variants were identified by single-strand conformation polymorphism (SSCP) profiles generated from a region amplified in ORF5. ORF5 sequence data confirmed the three genetic variant groups, and a specific SSCP profile was assigned to each variant group. The results of SSCP analysis of this region in ORF5 showed that this method gives a fast and reliable indication of the GLRaV-3 variant status of a plant, which in many instances showed mixed infections. The full genome sequence of one representative of each variant group i.e. isolates 621 (group I), 623 (group II) and PL-20 (group III), was determined by sequencing overlapping cloned fragments of these isolates. The sequences of genomic 5' ends of these isolates were determined by RLM-RACE. Sequence alignment of the 5'UTRs indicated significant sequence and length variation in this region between the three South African variant groups. Alignment of the Hsp70h and CP gene regions of these isolates with those of isolates from elsewhere in the world, followed by phylogenetic analysis, further supported the presence of three variants of GLRaV-3 in South Africa and the presence of two or three additional variant groups elsewhere in the world.
journal_name
Arch Viroljournal_title
Archives of virologyauthors
Jooste AE,Maree HJ,Bellstedt DU,Goszczynski DE,Pietersen G,Burger JTdoi
10.1007/s00705-010-0793-ysubject
Has Abstractpub_date
2010-12-01 00:00:00pages
1997-2006issue
12eissn
0304-8608issn
1432-8798journal_volume
155pub_type
杂志文章abstract::A novel Vibrio alginolyticus phage, VAP7, was isolated from seawater collected from Sanya, Hainan province, China. Whole-genome sequencing analysis revealed that phage VAP7 has a linear, double-stranded DNA genome of 144,685 bp with an average G+C content of 41.9% and a high degree of sequence similarity to Vibrio pha...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/s00705-020-04535-4
更新日期:2020-04-01 00:00:00
abstract::Brugmansia suaveolens mottle virus (BsMoV) was the first potyvirus isolated from "angel trumpet" (Brugmansia suaveolens), described in Brazil. In this study, the complete nucleotide (nt) genome sequence of BsMoV was determined, and the deduced amino acid (aa) sequence was analyzed. The BsMoV RNA genome consists of 987...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/s00705-010-0798-6
更新日期:2010-10-01 00:00:00
abstract::Spartina mottle virus (SpMV), an unassigned member of the family Potyviridae, has been known since 1980, when it was first described in England and Wales in symptomatic plants of the genus Spartina. In infected cells, flexuous particles and pinwheel inclusion bodies were found that resemble those of potyvirids. To dat...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/s00705-020-04726-z
更新日期:2020-10-01 00:00:00
abstract::A novel iflavirus, tentatively named "Sogatella furcifera honeydew virus 1" (SFHV1), discovered through transcriptome sequencing analysis of white-backed planthoppers (Sogatella furcifera) collected in southern China, is described here. The full genome of SFHV1 is 10,837 nucleotides (nt) long, including the polyA tail...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/s00705-018-3817-7
更新日期:2018-07-01 00:00:00
abstract::A hemagglutinating virus (8KS0813) was isolated from a red-necked stint. Hemagglutination inhibition and neutralization tests indicated that 8KS0813 was antigenically related to a prototype strain, APMV-6/duck/Hong Kong/18/199/77, but with an 8- and 16-fold difference, respectively, in their titers. The full genome se...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/s00705-014-2162-8
更新日期:2014-11-01 00:00:00
abstract::The use of the complete DNA sequence for the Marek's disease virus (MDV) serotype 1 vaccine strain CVI988 Rispens in comparative genomic studies with virulent strains of MDV has revealed the presence of a number of insertions, deletions and single-nucleotide polymorphisms. In this study, we investigated a SNP in the H...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/s00705-008-0152-4
更新日期:2008-01-01 00:00:00
abstract::Usurpation of the host's signalling pathways is a common strategy employed by viruses to promote their successful replication. Here we show that infection with the orthopoxvirus vaccinia virus (VACV) leads to sustained stimulation of c-Jun activity during the entire infective cycle. This stimulation is temporally regu...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/s00705-017-3446-6
更新日期:2017-10-01 00:00:00
abstract::HSV-2 infections suppress the antibody response to HSV-1 but do not impair the mouse cytomegalo virus (MCMV) antibody generating system. In contrast, the sheep red blood cell (SRBC) IgM response is impaired by preinfections with HSV-2 but not with HSV-1. From the time kinetics of this suppression it can be concluded t...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/BF01310741
更新日期:1987-01-01 00:00:00
abstract::Group C rotavirus (GCRV) infection has been described in several parts of the world, predominantly as sporadic cases of acute gastroenteritis. Little is known about the yearly changes in the GCRV strains from diarrheal outbreaks. Stool samples collected from outbreaks of acute gastroenteritis in Yokohama, Japan, betwe...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/s00705-013-1894-1
更新日期:2014-04-01 00:00:00
abstract::We determined the complete nucleotide sequence of a broad bean wilt virus 2 (BBWV-2) isolate from gentian in Japan. The full-length RNA1 and RNA2 sequences, excluding poly(A) tails, were 5955 and 3600 nucleotides long, respectively. Analysis indicated that, in contrast to other BBWV-2 isolates, the 5' end of both RNA1...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/s00705-013-1625-7
更新日期:2013-07-01 00:00:00
abstract::A large-scale dengue fever (DF) outbreak occurred in Chaozhou, Guangdong province, China 2015. In our study, 528 dengue-positive patient samples were collected for clinical and laboratory data analysis. 491 cases (93.0%) were primary dengue fever (PDF), 22 cases (4.2%) were dengue hemorrhagic fever (DHF) and 15 cases ...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/s00705-019-04266-1
更新日期:2019-08-01 00:00:00
abstract::The molecular epidemiology of a recent norovirus (NoV) outbreak in Brazil performed by comparative analysis with Genebank NoV sequences showed that the GII.4 strain was responsible for 72.5% of all NoV-positive cases (58/80). Other detected NoV strains included GII.3 (7/80; 8.8%) and GII.9 (8/80; 10%). This is the fir...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/s00705-008-0078-x
更新日期:2008-01-01 00:00:00
abstract::To determine the prevalence of enteroviruses in aquatic environments in Shenzhen, water samples were collected monthly from April 2010 to December 2011. After concentration by the filter adsorption-beef extract elution method, the enteroviruses were propagated in RD cells. Thirty-five of 105 water samples (33.33 %) we...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/s00705-013-1611-0
更新日期:2013-06-01 00:00:00
abstract::The genome of Japanese iris necrotic ring virus (JINRV) consists of a positive-sense ssRNA of 4014 nucleotides with six major open reading frames (ORFs). A 5'-non-coding region of 31 nucleotides precedes the first initiation codon. Like Carnation mottle virus (CarMV), the 5'-proximal three ORFs encode a 26 kDa protein...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/s007050050054
更新日期:2000-01-01 00:00:00
abstract::A pivotal step in the development of a consistent nomenclature for virus classification was the introduction of the virus species concept by the International Committee on Taxonomy of Viruses (ICTV) in 1991. Yet, almost two decades later, many virologists still are unable to differentiate between virus species and act...
journal_title:Archives of virology
pub_type: 杂志文章,评审
doi:10.1007/s00705-010-0600-9
更新日期:2010-04-01 00:00:00
abstract::Segment 10, encoding nonstructural proteins 3 (NS3) and 3a (NS3a) of epizootic haemorrhagic disease virus serotype 1 (EHDV-1) was sequenced. Computer motif recognition programs were used for interpretation of the sequence data to predict a structure for NS3. Integral membrane protein theories were then applied to prod...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/BF01309968
更新日期:1995-01-01 00:00:00
abstract::A cross-sectional study was undertaken during 2012-2013 to determine the prevalence, strains and factors associated with rotavirus infection among under-5-year-old children hospitalized with acute diarrhea in Uganda. Rotaviruses were detected in 37 % (263/712) of the children. The most prevalent strains were G9P[8] (2...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/s00705-015-2742-2
更新日期:2016-04-01 00:00:00
abstract::Avian leukosis virus subgroup J (ALV-J) is an avian oncogenic retrovirus that has caused severe economic losses in China. Gp85 protein is the main envelope protein and the most variable structural protein of ALV-J. It is also involved in virus neutralization. In this study, a specific monoclonal antibody, 4A3, was pro...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/s00705-014-2318-6
更新日期:2015-04-01 00:00:00
abstract::Antigenic relationships between the Wa, Hochi, Ito, Hosokawa and Nemoto strains of human rotavirus, the SA-11 strain of simian rotavirus, the Lincoln strain of bovine rotavirus, the OSU strain of porcine rotavirus and the R-2 strain of lapine rotavirus, which were all established in cell culture, were studied by neutr...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/BF01341726
更新日期:1982-01-01 00:00:00
abstract::Chrysanthemums worldwide suffer from a high incidence of infection with chrysanthemum virus B (CVB), a member of the genus Carlavirus, family Betaflexiviridae. Three major lineages or strains of this virus have been found in India, but none have been characterized beyond the genetic variation they display in their coa...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/s00705-011-1190-x
更新日期:2012-03-01 00:00:00
abstract::Bovine herpesvirus 1 (BHV-1) is a major pathogen of cattle, causing significant disease including immunosuppression in infected animals. In vitro, the surface expression of major histocompatibility complex (MHC) class I molecules, crucial for an appropriate anti-viral immune response of the host, is down-regulated by ...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/s007050070038
更新日期:2000-01-01 00:00:00
abstract::Porcine respiratory coronavirus (PRCV), a spike (S) gene deletion mutant of Transmissible gastroenteritis virus (TGEV), causes mild or subclinical respiratory infections in pigs. The shedding of PRCV/TGEV was studied at different days post-arrival in fecal and nasal swabs from PRCV/TGEV seronegative sentinel pigs intr...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/s00705-003-0245-z
更新日期:2004-05-01 00:00:00
abstract::Scrapie and Creutzfeldt-Jakob disease (CJD) are caused by infectious agents that are defined phenomenologically. No agent-specific molecules or particles have been identified. Biological properties, such as exponential agent replication and strain variation, as well as physical characteristics of infectivity indicate ...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/BF01309662
更新日期:1993-01-01 00:00:00
abstract::Scutellaria baicalensis Georgi, a Chinese herbal decoction, has been used for the treatment of the common cold, fever and influenza virus infections. In previous studies, we found that oral administration of baicalein resulted in the inhibition of influenza A virus replication in vivo, which was linked to baicalin in ...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/s00705-014-2192-2
更新日期:2014-12-01 00:00:00
abstract::In an effort to determine whether distinct types of bovine herpesvirus 1 are responsible for causing specific syndromes, the polypeptides and DNA of 93 BHV 1 isolates from the province of Alberta as well as vaccine strains and numerous other Canadian, U.S. and European isolates were analyzed by PAGE and restriction en...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/BF01311201
更新日期:1983-01-01 00:00:00
abstract::RNA extracted from 120 leaf specimens from 17 plant species was pooled, and polyadenylated RNA species were sequenced together without barcoding in one lane using massively parallel sequencing technology. After analysis, complete or partial genome sequences representing 20 virus isolates of 16 polyadenylated RNA speci...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/s00705-011-1166-x
更新日期:2012-02-01 00:00:00
abstract::Due to their natural host-range restriction to avian species, canarypox virus (CP) and fowlpox virus (FP) represent efficient and safe vaccine vectors, as they correctly express transgenes in human cells, elicit complete immune responses, and show protective efficacy in preclinical animal models. At present, no inform...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/s00705-010-0663-7
更新日期:2010-06-01 00:00:00
abstract::A wheat-infecting furovirus found in Tompkins County, New York, U.S.A. was identified as a strain of Soil-borne wheat mosaic virus (SBWMV) by means of sequence analyses of portions of its RNA 1 and 2. The nucleotide sequences of several of its genes differed by c. 9 to 12% from those of the corresponding genome region...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/s007050200011
更新日期:2002-03-01 00:00:00
abstract::The nucleotide sequence of genomic RNA of Marburg virus strain Popp was determined. Strain Popp was isolated in 1967 during the first filoviral outbreak. The virus was purified from blood of infected guinea pigs in which it had been maintained. The length of the determined sequence was 19112 nucleotides. Amino acid se...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/BF01322532
更新日期:1995-01-01 00:00:00
abstract::China experienced an outbreak of equine influenza during 2007-2008. Meanwhile, its neighbor countries, such as Mongolia, India and Japan, have also been affected by various influenza virus strains in each country. Phylogenetic analysis showed that the newly emerging Chinese strains belong to Florida sublineage clade 2...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/s00705-010-0724-y
更新日期:2010-09-01 00:00:00