Recurrent inversion events at 17q21.31 microdeletion locus are linked to the MAPT H2 haplotype.

Abstract:

:The chromosomal band 17q21.31, containing the microtubule-associated protein tau (MAPT) gene, is a hotspot for chromosomal rearrangements. It is known to contain a common inversion polymorphism of approximately 900 kb in populations with European ancestry. The inverted configuration is linked to a distinct MAPT haplotype, H2, which is relatively common in Europeans but nearly absent in Asian and African populations. Recent studies have demonstrated that the H2 haplotype is ancestral in hominoids, and under positive selection in Europeans. This haplotype is also linked to events leading to the 17q21.31 microdeletion syndrome, one of the most common causes of 'idiopathic' mental retardation in people of European descent. We performed direct analysis of the chromosome structure by fluorescence in situ hybridization and observed heterozygosity of the inversion status for the H2 chromosomes, but not for the H1 haplotype. Inversion heterozygosity was also observed in a mother homozygous for the H2 haplotype, who transmitted the chromosome with the deletion to a proband with 17q21.31 microdeletion syndrome. Our results highlight an allele-specific sensitivity to chromosome rearrangements and suggest that it is the heterozygosity of inversion status that predisposes to the 17q21.31 microdeletion syndrome.

journal_name

Cytogenet Genome Res

authors

Rao PN,Li W,Vissers LE,Veltman JA,Ophoff RA

doi

10.1159/000315901

subject

Has Abstract

pub_date

2010-01-01 00:00:00

pages

275-9

issue

4

eissn

1424-8581

issn

1424-859X

pii

000315901

journal_volume

129

pub_type

杂志文章
  • Genome wide measurement of DNA copy number changes in neuroblastoma: dissecting amplicons and mapping losses, gains and breakpoints.

    abstract::In the past few years high throughput methods for assessment of DNA copy number alterations have witnessed rapid progress. Both 'in house' developed BAC, cDNA, oligonucleotide and commercial arrays are now available and widely applied in the study of the human genome, particularly in the context of disease. Cancer cel...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章

    doi:10.1159/000095924

    authors: Michels E,Vandesompele J,Hoebeeck J,Menten B,De Preter K,Laureys G,Van Roy N,Speleman F

    更新日期:2006-01-01 00:00:00

  • Cytogenetic and array-CGH characterization of a complex de novo rearrangement involving duplication and deletion of 9p and clinical findings in a 4-month-old female.

    abstract::Approximately 15 patients with partial trisomy 9p involving de novo duplications have been previously described. Here, we present clinical, cytogenetic, FISH and aCGH findings in a patient with a de novo complex rearrangement in the short arm of chromosome 9 involving an inverted duplication at 9p24-->p21.3 and a dele...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章

    doi:10.1159/000251966

    authors: Hulick PJ,Noonan KM,Kulkarni S,Donovan DJ,Listewnik M,Ihm C,Stoler JM,Weremowicz S

    更新日期:2009-01-01 00:00:00

  • A high density of human communication-associated genes in chromosome 7q31-q36: differential expression in human and non-human primate cortices.

    abstract::The human brain is distinguished by its remarkable size, high energy consumption, and cognitive abilities compared to all other mammals and non-human primates. However, little is known about what has accelerated brain evolution in the human lineage. One possible explanation is that the appearance of advanced communica...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章

    doi:10.1159/000335465

    authors: Schneider E,Jensen LR,Farcas R,Kondova I,Bontrop RE,Navarro B,Fuchs E,Kuss AW,Haaf T

    更新日期:2012-01-01 00:00:00

  • Elevated chromosome translocation frequencies in New Zealand nuclear test veterans.

    abstract::In 1957/58 the British Government conducted a series of nuclear tests in the mid-Pacific codenamed Operation Grapple, which involved several naval vessels from Britain and New Zealand. Two New Zealand frigates with 551 personnel onboard were stationed at various distances between 20 and 150 nautical miles from ground ...

    journal_title:Cytogenetic and genome research

    pub_type: 历史文章,杂志文章

    doi:10.1159/000125832

    authors: Wahab MA,Nickless EM,Najar-M'kacher R,Parmentier C,Podd JV,Rowland RE

    更新日期:2008-01-01 00:00:00

  • A model for genetic complementation controlling the chromosomal abnormalities and loss of heterozygosity formation in cancer.

    abstract::The relationship between the apparently random chromosomal changes found in aneuploidy and the genetic instability driving the progression of cancer is not clear. We report a test of the hypothesis that aneuploid chromosomal abnormalities might be selected to preserve cell-survival genes during loss of heterozygosity ...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章

    doi:10.1159/000100406

    authors: Nestor AL,Hollopeter SL,Matsui SI,Allison D

    更新日期:2007-01-01 00:00:00

  • Evolutionary forces generating sequence homogeneity and heterogeneity within retrotransposon families.

    abstract::Genome projects allow us to sample copies of a retrotransposon sequence family residing in a host genome. The variation in DNA sequence between these individual copies will reflect the evolutionary process that has spread the sequences through the genome. Here I review quantitatively the expected diversity of elements...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章,评审

    doi:10.1159/000084970

    authors: Brookfield JF

    更新日期:2005-01-01 00:00:00

  • The role of DMDs in the maintenance of epigenetic states.

    abstract::An important aspect of genome reprogramming is the establishment and maintenance of gamete-specific DNA methylation patterns that distinguish the parental alleles of imprinted genes. Disrupting the accurate transmission of genomic imprints by interfering with these methylation patterns causes severe defects in fetal g...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章,评审

    doi:10.1159/000090822

    authors: Paoloni-Giacobino A,Chaillet JR

    更新日期:2006-01-01 00:00:00

  • The Mobilome of Reptiles: Evolution, Structure, and Function.

    abstract::Transposable elements (TE) constitute one of the most variable genomic features among vertebrates, impacting genome size, structure, and composition. Despite their important role in shaping genomic diversity, they have mostly been studied in mammals, which display one of the least diverse genomes in terms of TE divers...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章,评审

    doi:10.1159/000496416

    authors: Boissinot S,Bourgeois Y,Manthey JD,Ruggiero RP

    更新日期:2019-01-01 00:00:00

  • Correlating the Genetic and Physical Map of Barley Chromosome 3H Revealed Limitations of the FISH-Based Mapping of Nearby Single-Copy Probes Caused by the Dynamic Structure of Metaphase Chromosomes.

    abstract::Genetic maps are based on the recombination frequency of molecular markers which often show different positions in comparison to the corresponding physical maps. To decipher the position and order of DNA sequences genetically mapped to terminal and interstitial regions of barley (Hordeum vulgare) chromosome 3H, fluore...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章

    doi:10.1159/000478631

    authors: Bustamante FO,Aliyeva-Schnorr L,Fuchs J,Beier S,Houben A

    更新日期:2017-01-01 00:00:00

  • Heteromorphic sex chromosome system with an exceptionally large Y chromosome in a catfish Steindachneridion sp. (Pimelodidae).

    abstract::The chromosomes and banding patterns of Steindachneridion sp., a large catfish (Pimelodidae), endemic to the Iguaçu River, Brazil, were analyzed using conventional (C-, G-banding) and restriction enzyme banding methods. The same diploid number (2n = 56) as in other members of the genus and the family was found but the...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章

    doi:10.1159/000089888

    authors: Swarça AC,Fenocchio AS,Cestari MM,Bertollo LA,Dias AL

    更新日期:2006-01-01 00:00:00

  • Changes in DNA methylation levels and nuclear distribution patterns after microspore reprogramming to embryogenesis in barley.

    abstract::Under specific stress treatments, the microspore can be induced in vitro to deviate from its gametophytic development and to reprogram towards embryogenesis, becoming a totipotent cell and forming haploid embryos. These can further regenerate homozygous plants for production of new isogenic lines, an important biotech...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章

    doi:10.1159/000365232

    authors: El-Tantawy AA,Solís MT,Risueño MC,Testillano PS

    更新日期:2014-01-01 00:00:00

  • Chromosomal mechanisms underlying the karyotype evolution of the oriental voles (Muridae, Eothenomys).

    abstract::We have investigated the karyotype relationships of two oriental voles, i.e. the Yulong vole (Eothenomys proditor, 2n = 32) and the large oriental vole (Eothenomys miletus, 2n = 56) as well as the Clarke's vole (Microtus clarkei, 2n = 52), by a combined approach of cross-species chromosome painting and high-resolution...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章

    doi:10.1159/000091928

    authors: Li T,Wang J,Su W,Yang F

    更新日期:2006-01-01 00:00:00

  • How common are common fragile sites in humans: interindividual variation in the distribution of aphidicolin-induced fragile sites.

    abstract::To obtain an estimate of the variation in common fragile sites (CFSs) among individuals, aphidicolin (APC)-induced chromosomal breakage data were analyzed for 20 karyotypically normal adult humans. As it is specifically designed to meet the analytical requirements for considering fragile sites as presence/absence char...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章

    doi:10.1159/000073411

    authors: Denison SR,Simper RK,Greenbaum IF

    更新日期:2003-01-01 00:00:00

  • U-HO1, a new cell line derived from a primary refractory classical Hodgkin lymphoma.

    abstract::The Hodgkin cell line U-HO1 was established from a malignant pleural effusion of a 23-year-old male patient during the end stage of refractory nodular sclerosing classical Hodgkin lymphoma (cHL). Since its establishment in 2005, U-HO1 has maintained stable characteristics in vitro and has a doubling time of about 4 da...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章

    doi:10.1159/000112062

    authors: Mader A,Bruderlein S,Wegener S,Melzner I,Popov S,Muller-Hermelink HK,Barth TF,Viardot A,Moller P

    更新日期:2007-01-01 00:00:00

  • Multicolor fluorescence in situ hybridization (FISH) applied to FISH-banding.

    abstract::During the last decade not only multicolor fluorescence in situ hybridization (FISH) using whole chromosome paints as probes, but also numerous chromosome banding techniques based on FISH have been developed for the human and for the murine genome. This review focuses on such FISH-banding techniques, which were recent...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章,评审

    doi:10.1159/000094207

    authors: Liehr T,Starke H,Heller A,Kosyakova N,Mrasek K,Gross M,Karst C,Steinhaeuser U,Hunstig F,Fickelscher I,Kuechler A,Trifonov V,Romanenko SA,Weise A

    更新日期:2006-01-01 00:00:00

  • Long dsRNA and silent genes strike back:RNAi in mouse oocytes and early embryos.

    abstract::RNA interference (RNAi) refers to the selective degradation of mRNA induced by double-stranded RNA (dsRNA), first discovered in Caenorhabditis elegans. Homology-dependent silencing phenomena related to RNAi have been observed in many species from all eukaryotic kingdoms. RNAi and related mechanisms share several conse...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章,评审

    doi:10.1159/000078215

    authors: Svoboda P

    更新日期:2004-01-01 00:00:00

  • LIM-kinase as a regulator of actin dynamics in spermatogenesis.

    abstract::We have identified LIM-kinase (LIMK1 and LIMK2), the only known catalytic protein among LIM-family molecules. Both LIMK1 and LIMK2 phosphorylate (inactivate) cofilin, an actin depolymerizing factor, and induce actin cytoskeleton reorganization. We as well as others concurrently demonstrated that LIMK activation was re...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章,评审

    doi:10.1159/000076815

    authors: Takahashi H,Funakoshi H,Nakamura T

    更新日期:2003-01-01 00:00:00

  • Frequency and distribution of rob(1;29) in eight Portuguese cattle breeds.

    abstract::Cytogenetic investigations performed in eight Portuguese cattle breeds revealed the presence of rob(1;29) in both heterozygous and homozygous conditions in all, and five breeds, respectively, with variable percentages of carriers as follows: 41.0% in Arouquesa, 69.9% in Barrosa, 39.4% in Maronesa, 2.8% in Mirandesa, 8...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章

    doi:10.1159/000118755

    authors: Iannuzzi A,Di Meo GP,Caputi Jambrenghi A,Vonghia G,Iannuzzi L,Rangel-Figueiredo T

    更新日期:2008-01-01 00:00:00

  • Mechanism and genotype-phenotype correlation of two proximal 6q deletions characterized using mBAND, FISH, array CGH, and DNA sequencing.

    abstract::Proximal 6q deletions have a milder phenotype than middle and distal 6q deletions. We describe 2 patients with non-overlapping deletions of about 15 and 19 Mb, respectively, which subdivide the proximal 6q region into 2 parts. The aberrations were identified using karyotyping and analysed using mBAND and array CGH. Th...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章

    doi:10.1159/000334709

    authors: Vlckova M,Trkova M,Zemanova Z,Hancarova M,Novotna D,Raskova D,Puchmajerova A,Drabova J,Zmitkova Z,Tan Y,Sedlacek Z

    更新日期:2012-01-01 00:00:00

  • G2 chromatid damage and repair kinetics in normal human fibroblast cells exposed to low- or high-LET radiation.

    abstract::Radiation-induced chromosome damage can be measured in interphase using the Premature Chromosome Condensation (PCC) technique. With the introduction of a new PCC technique using the potent phosphatase inhibitor calyculin-A, chromosomes can be condensed within five minutes, and it is now possible to examine the early d...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章,评审

    doi:10.1159/000077491

    authors: Kawata T,Ito H,Uno T,Saito M,Yamamoto S,Furusawa Y,Durante M,George K,Wu H,Cucinotta FA

    更新日期:2004-01-01 00:00:00

  • Meiotic recombination in normal and clone bulls and their offspring.

    abstract::Homologous chromosome pairing and recombination are essential components of meiosis and sexual reproduction. The reshuffling of genetic material through breakage and reunion of chromatids ensure proper segregation of homologous chromosomes in reduction division and genetic diversity in the progeny. The advent of somat...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章

    doi:10.1159/000118745

    authors: Hart EJ,Pinton A,Powell A,Wall R,King WA

    更新日期:2008-01-01 00:00:00

  • Transposable DNA Elements in Amazonian Fish: From Genome Enlargement to Genetic Adaptation to Stressful Environments.

    abstract::Transposable elements have driven genome evolution and plasticity in many ways across a range of organisms. Different types of biotic and abiotic stresses can stimulate the expression or transposition of these mobile elements. Here, we cytogenetically analyzed natural fish populations of the same species living under ...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章

    doi:10.1159/000507104

    authors: da Silva FA,Corrêa Guimarães EM,Carvalho NDM,Ferreira AMV,Schneider CH,Carvalho-Zilse GA,Feldberg E,Gross MC

    更新日期:2020-01-01 00:00:00

  • Overview of Chromosome Abnormalities in First Trimester Miscarriages: A Series of 1,011 Consecutive Chorionic Villi Sample Karyotypes.

    abstract::In order to contribute to the knowledge of type and frequency of chromosome abnormalities in early pregnancy losses, we analyzed the cytogenetic results from a large series of first trimester miscarriages, using a diagnostic approach with a high success rate and no maternal contamination. A total of 1,119 consecutive ...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章

    doi:10.1159/000477707

    authors: Soler A,Morales C,Mademont-Soler I,Margarit E,Borrell A,Borobio V,Muñoz M,Sánchez A

    更新日期:2017-01-01 00:00:00

  • Biallelic expression of Z-linked genes in male chickens.

    abstract::In birds, females are heterogametic (ZW), while males are homogametic (ZZ). It has been proposed that there is no dosage compensation for the expression of Z-linked genes in birds. In order to examine if the genes are inactivated on one of the two Z chromosomes, we analyzed the allelic expression of the B4GALT1 and CH...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章

    doi:10.1159/000071609

    authors: Kuroiwa A,Yokomine T,Sasaki H,Tsudzuki M,Tanaka K,Namikawa T,Matsuda Y

    更新日期:2002-01-01 00:00:00

  • Distribution of the T2-MITE Family Transposons in the Xenopus (Silurana) tropicalis Genome.

    abstract::The T2 family of miniature inverted-repeat transposable elements (T2-MITE) is a prevalent MITE family found in both Xenopus(Silurana) tropicalis and X. laevis. Some subfamilies, particularly T2-A1 and T2-C, may have originated prior to the diversification of the 2 Xenopus lineages and currently include active members ...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章

    doi:10.1159/000430764

    authors: Hikosaka A,Uno Y,Matsuda Y

    更新日期:2015-01-01 00:00:00

  • HIV-1/AIDS susceptibility and copy number variation in CCL3L1, a gene encoding a natural ligand for HIV-1 co-receptor CCR5.

    abstract::Variations of gene copy number in the human genome are increasingly recognized as a genetic factor in phenotypic variation. Human CC chemokine ligand 3-like 1 gene (CCL3L1), which is located on human chromosome 17q11.2, is highly variable in copy number owing to having a hot spot for segmental duplications. CCL3L1, a ...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章,评审

    doi:10.1159/000184703

    authors: Nakajima T,Kaur G,Mehra N,Kimura A

    更新日期:2008-01-01 00:00:00

  • Equine FISH mapping of 36 genes known to locate on human chromosome ends.

    abstract::The INRA and the CHORI-241 horse BAC libraries were screened by hybridization with DNA probes and/or directly by PCR with primers designed in consensus sequences of genes localized at the end of each human chromosome. BAC clones were retrieved and 36 could be FISH mapped after the expected gene was confirmed in each B...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章

    doi:10.1159/000085669

    authors: Perrocheau M,Boutreux V,Chadi-Taourit S,Di Meo GP,Perucatti A,Incarnato D,Cribiu EP,Guérin G,Iannuzzi L

    更新日期:2005-01-01 00:00:00

  • Integration of chicken genomic resources to enable whole-genome sequencing.

    abstract::Different genomic resources in chicken were integrated through the Wageningen chicken BAC library. First, a BAC anchor map was created by screening this library with two sets of markers: microsatellite markers from the consensus linkage map and markers created from BAC end sequencing in chromosome walking experiments....

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章

    doi:10.1159/000075766

    authors: Aerts J,Crooijmans R,Cornelissen S,Hemmatian K,Veenendaal T,Jaadar A,van der Poel J,Fillon V,Vignal A,Groenen M

    更新日期:2003-01-01 00:00:00

  • Characterisation of a GC-rich telomeric satellite DNA in Eumeces schneideri Daudin (Reptilia, Scincidae).

    abstract::A hitherto undescribed satellite DNA family (AvaII satDNA) has been isolated and characterised in Eumeces schneideri, a squamate reptile belonging to the family Scincidae. AvaII satDNA is characterised by a monomer length of 208 bp, a GC content of 59% and exhibits a certain degree of CpG methylation. FISH experiments...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章

    doi:10.1159/000235933

    authors: Giovannotti M,Nisi Cerioni P,Caputo V,Olmo E

    更新日期:2009-01-01 00:00:00

  • Deletion 18p11.32p11.31 in a Child with Global Developmental Delay and Atypical, Drug-Resistant Absence Seizures.

    abstract::We report the first case of an 18p11.32 deletion, detected by array CGH, associated with a drug-resistant form of atypical absence epilepsy, global developmental delay and no signs of holoprosencephaly (HPE). In particular, this region encompasses 19 genes, and none of these genes have been strictly associated with ep...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章

    doi:10.1159/000438502

    authors: Verrotti A,Palka C,Prezioso G,Alfonsi M,Calabrese G,Palka G,Chiarelli F

    更新日期:2015-01-01 00:00:00