Analysis of secreted proteins for the study of bladder cancer cell aggressiveness.

Abstract:

:Secreted proteins play a key role in cell signaling, communication, and migration. We recently described the development of an aggressive variant (T24M) of the bladder cancer cell line T24. Using this cell line model, the objective of our work was the identification of secreted proteins involved in the acquisition of the aggressive phenotype. Using in vitro assays, we demonstrate that conditioned media of the T24M cells promote motility of the parental less aggressive T24 cells. Proteomic analysis of cell culture conditioned media by the use of 2-dimensional gel electrophoresis coupled to MALDI TOF MS and LC-MS approaches resulted in enrichment and detection of multiple classical extracellular and secreted proteins such as fibronectin, cystatin, fibrillin, fibulin, interleukin 6, etc. Comparison of the secretome of the T24 and T24M cells indicated differences in proteins with potential involvement in the mechanisms of cell aggressiveness including SPARC, tPA, and clusterin. These findings were further confirmed by Western blot analysis. In the case of SPARC, further studies involving transwell assays indicated that blockage of the protein in the presence of SPARC-specific Abs results in decreased cell motility. Collectively, our study provides a 2DE-based comprehensive analysis of bladder cancer cell secretome. The results indicate various secreted proteins with potential involvement in bladder cancer cell aggressiveness and more specifically provide initial evidence for special role of SPARC in bladder cancer cell motility and invasiveness.

journal_name

J Proteome Res

authors

Makridakis M,Roubelakis MG,Bitsika V,Dimuccio V,Samiotaki M,Kossida S,Panayotou G,Coleman J,Candiano G,Anagnou NP,Vlahou A

doi

10.1021/pr100189d

subject

Has Abstract

pub_date

2010-06-04 00:00:00

pages

3243-59

issue

6

eissn

1535-3893

issn

1535-3907

journal_volume

9

pub_type

杂志文章
  • Mapping glycans onto specific N-linked glycosylation sites of Pyrus communis PGIP redefines the interface for EPG-PGIP interactions.

    abstract::Polygalacturonase inhibiting proteins (PGIPs) are members of the leucine rich repeat family of proteins, involved in plant defense against fungal pathogens. PGIPs exhibit a remarkable degree of specificity in terms of their ability to bind and inhibit their target molecules, the endopolygalacturonases (EPGs). This spe...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr800855f

    authors: Lim JM,Aoki K,Angel P,Garrison D,King D,Tiemeyer M,Bergmann C,Wells L

    更新日期:2009-02-01 00:00:00

  • FPPI: Fusarium graminearum protein-protein interaction database.

    abstract::The fungal pathogen Fusarium graminearum (telomorph Gibberella zeae) is the causal agent of several destructive crop diseases. Identifying interactions among F. graminearum proteins and understanding their functions can provide insights into pathogenic mechanisms underlying F. graminearum-host interactions. F. gramine...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr900415b

    authors: Zhao XM,Zhang XW,Tang WH,Chen L

    更新日期:2009-10-01 00:00:00

  • Qualitative and quantitative proteomic profiling of cripto(-/-) embryonic stem cells by means of accurate mass LC-MS analysis.

    abstract::Cripto is one of the key regulators of embryonic stem cells (ESCs) differentiation into cardiomyocites vs neuronal fate. Cripto(-/-) murine ESCs have been utilized to investigate the molecular mechanisms underlying early events of mammalian lineage differentiation. 2D/LC-MS/MS and a label-free LC-MS approaches were us...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr800485c

    authors: Chambery A,Vissers JP,Langridge JI,Lonardo E,Minchiotti G,Ruvo M,Parente A

    更新日期:2009-02-01 00:00:00

  • Metabolomics in cerebrospinal fluid of patients with amyotrophic lateral sclerosis: an untargeted approach via high-resolution mass spectrometry.

    abstract::Amyotrophic lateral sclerosis (ALS) is characterized by the absence of reliable diagnostic biomarkers. The aim of the study was to (i) devise an untargeted metabolomics methodology that reliably compares cerebrospinal fluid (CSF) from ALS patients and controls by liquid chromatography coupled to high-resolution mass s...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr400376e

    authors: Blasco H,Corcia P,Pradat PF,Bocca C,Gordon PH,Veyrat-Durebex C,Mavel S,Nadal-Desbarats L,Moreau C,Devos D,Andres CR,Emond P

    更新日期:2013-08-02 00:00:00

  • Metabolomics study of human urinary metabolome modifications after intake of almond (Prunus dulcis (Mill.) D.A. Webb) skin polyphenols.

    abstract::Almond, as a part of the nut family, is an important source of biological compounds, and specifically, almond skins have been considered an important source of polyphenols, including flavan-3-ols and flavonols. Polyphenol metabolism may produce several classes of metabolites that could often be more biologically activ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr100639v

    authors: Llorach R,Garrido I,Monagas M,Urpi-Sarda M,Tulipani S,Bartolome B,Andres-Lacueva C

    更新日期:2010-11-05 00:00:00

  • Targeting XIAP and PPARγ in Granulosa Cell Tumors Alters Metabolic Signaling.

    abstract::Ovarian granulosa cell tumors (GCTs) are hormonally active cancers characterized by indolent growth and late, invasive relapse. No therapies have yet proven to be efficacious. We previously reported that the inhibition of the antiapoptotic X-linked inhibitor of apoptosis protein (XIAP) removes transrepression of the p...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.8b00917

    authors: Leung DTH,Rainczuk A,Nguyen T,Stephens A,Silke J,Fuller PJ,Chu S

    更新日期:2019-04-05 00:00:00

  • Metaproteomics Analysis of SARS-CoV-2-Infected Patient Samples Reveals Presence of Potential Coinfecting Microorganisms.

    abstract::In this Letter, we reanalyze published mass spectrometry data sets of clinical samples with a focus on determining the coinfection status of individuals infected with SARS-CoV-2 coronavirus. We demonstrate the use of ComPIL 2.0 software along with a metaproteomics workflow within the Galaxy platform to detect cohabita...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.0c00822

    authors: Thuy-Boun PS,Mehta S,Gruening B,McGowan T,Nguyen A,Rajczewski AT,Johnson JE,Griffin TJ,Wolan DW,Jagtap PD

    更新日期:2021-01-04 00:00:00

  • Investigating the dynamic nature of the interactions between nuclear proteins and histones upon DNA damage using an immobilized peptide chemical proteomics approach.

    abstract::As a result of the complexity and dynamic range of the cellular proteome, including mutual interactions and interactions with other molecules, focused proteomic approaches are important to study subsets of physiologically important proteins. In one such approach, a small molecule or part of a protein is immobilized on...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr060278b

    authors: Dirksen EH,Pinkse MW,Rijkers DT,Cloos J,Liskamp RM,Slijper M,Heck AJ

    更新日期:2006-09-01 00:00:00

  • High Resolution GC-Orbitrap-MS Metabolomics Using Both Electron Ionization and Chemical Ionization for Analysis of Human Plasma.

    abstract::Gas chromatography-mass spectrometry (GC-MS) platforms are typically run in electron ionization (EI) mode for mass spectral matching and metabolite annotation. With the advent of high resolution mass spectrometry (HRMS), soft ionization techniques such as chemical ionization (CI) may provide additional coverage for co...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.9b00774

    authors: Misra BB,Olivier M

    更新日期:2020-07-02 00:00:00

  • Comparative proteomics analysis of selenium responses in selenium-enriched rice grains.

    abstract::By foliar fortification with selenite, selenium (Se)-enriched rice with a higher Se content and grain yield has been generated. However, the regulatory mechanisms of Se response in rice grains remain unknown; therefore, we carried out a comparative proteomics study in Se-enriched rice grains by using two approaches in...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr300878y

    authors: Wang YD,Wang X,Ngai SM,Wong YS

    更新日期:2013-02-01 00:00:00

  • Absolute protein quantification by LC/MS(E) for global analysis of salicylic acid-induced plant protein secretion responses.

    abstract::The plant cell wall is a dynamic cellular compartment consisting of a complex matrix of components that can change dramatically in response to environmental stresses. During pathogen attack, for instance, a wide spectrum of proteins that participate in various sequential processes involved in plant defense is secreted...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr800649s

    authors: Cheng FY,Blackburn K,Lin YM,Goshe MB,Williamson JD

    更新日期:2009-01-01 00:00:00

  • Quantitative overview of N2 fixation in Nostoc punctiforme ATCC 29133 through cellular enrichments and iTRAQ shotgun proteomics.

    abstract::Nostoc punctiforme ATCC 29133 is a photoautotrophic cyanobacterium with the capacity to fix atmospheric N 2. Its ability to mediate this process is similar to that described for Nostoc sp. PCC 7120, where vegetative cells differentiate into heterocysts. Quantitative proteomic investigations at both the filament level ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr800285v

    authors: Ow SY,Noirel J,Cardona T,Taton A,Lindblad P,Stensjö K,Wright PC

    更新日期:2009-01-01 00:00:00

  • Param-Medic: A Tool for Improving MS/MS Database Search Yield by Optimizing Parameter Settings.

    abstract::In shotgun proteomics analysis, user-specified parameters are critical to database search performance and therefore to the yield of confident peptide-spectrum matches (PSMs). Two of the most important parameters are related to the accuracy of the mass spectrometer. Precursor mass tolerance defines the peptide candidat...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.7b00028

    authors: May DH,Tamura K,Noble WS

    更新日期:2017-04-07 00:00:00

  • Screening of Chemical Modifications in Human Skin Keratins by Mass Spectrometry-Based Proteomic Analysis via Noninvasive Sampling and On-Tape Digestion.

    abstract::Proteins are continuously exposed to diverse chemical stresses, and the resulting chemical modifications can provide significant information on biological events. Keratins are the main constituent of human skin and are the major target proteins of various chemical modifications. We have previously developed a mass spe...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.0c00406

    authors: Lee SH,Kawase J,Hiroshima Y,Oe T

    更新日期:2020-09-04 00:00:00

  • Quantitative proteomic analysis of membrane proteins involved in astroglial differentiation of neural stem cells by SILAC labeling coupled with LC-MS/MS.

    abstract::Membrane proteins play a critical role in the process of neural stem cell self-renewal and differentiation. Here, we apply the SILAC (stable isotope labeling by amino acids in cell culture) approach to quantitatively compare the membrane proteome of the self-renewing and the astroglial differentiating cells. High-reso...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr200677z

    authors: Cao R,Chen K,Song Q,Zang Y,Li J,Wang X,Chen P,Liang S

    更新日期:2012-02-03 00:00:00

  • Visualizing and Clustering Protein Similarity Networks: Sequences, Structures, and Functions.

    abstract::Research in the recent decade has demonstrated the usefulness of protein network knowledge in furthering the study of molecular evolution of proteins, understanding the robustness of cells to perturbation, and annotating new protein functions. In this study, we aimed to provide a general clustering approach to visuali...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.5b01031

    authors: Mai TL,Hu GM,Chen CM

    更新日期:2016-07-01 00:00:00

  • Interaction network of the 14-3-3 protein in the ancient protozoan parasite Giardia duodenalis.

    abstract::14-3-3s are phosphoserine/phosphotreonine binding proteins that play pivotal roles as regulators of multiple cellular processes in eukaryotes. The flagellated protozoan parasite Giardia duodenalis, the causing agent of giardiasis, is a valuable simplified eukaryotic model. A single 14-3-3 isoform (g14-3-3) is expresse...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr3000199

    authors: Lalle M,Camerini S,Cecchetti S,Sayadi A,Crescenzi M,Pozio E

    更新日期:2012-05-04 00:00:00

  • Proteome Changes during Transition from Human Embryonic to Vascular Progenitor Cells.

    abstract::Human embryonic stem cells (hESCs) are promising in regenerative medicine (RM) due to their differentiation plasticity and proliferation potential. However, a major challenge in RM is the generation of a vascular system to support nutrient flow to newly synthesized tissues. Here we refined an existing method to genera...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.6b00180

    authors: Tsolis KC,Bagli E,Kanaki K,Zografou S,Carpentier S,Bei ES,Christoforidis S,Zervakis M,Murphy C,Fotsis T,Economou A

    更新日期:2016-06-03 00:00:00

  • Identification of hypoxia-regulated proteins using MALDI-mass spectrometry imaging combined with quantitative proteomics.

    abstract::Hypoxia is present in most solid tumors and is clinically correlated with increased metastasis and poor patient survival. While studies have demonstrated the role of hypoxia and hypoxia-regulated proteins in cancer progression, no attempts have been made to identify hypoxia-regulated proteins using quantitative proteo...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr401056c

    authors: Djidja MC,Chang J,Hadjiprocopis A,Schmich F,Sinclair J,Mršnik M,Schoof EM,Barker HE,Linding R,Jørgensen C,Erler JT

    更新日期:2014-05-02 00:00:00

  • Ethylenediaminetetraacetic acid increases identification rate of phosphoproteomics in real biological samples.

    abstract::We have developed a novel approach to enhance phosphopeptide identification in liquid chromatography/mass spectrometry (LC/MS)-based phosphoproteomics. After enrichment of phosphopeptides with immobilized metal affinity chromatography (IMAC) and titanium dioxide (TiO(2)) microcolumns, samples were coinjected with ethy...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr900918h

    authors: Nakamura T,Myint KT,Oda Y

    更新日期:2010-03-05 00:00:00

  • A data-mining scheme for identifying peptide structural motifs responsible for different MS/MS fragmentation intensity patterns.

    abstract::Although tandem mass spectrometry (MS/MS) has become an integral part of proteomics, intensity patterns in MS/MS spectra are rarely weighted heavily in most widely used algorithms because they are not yet fully understood. Here a knowledge mining approach is demonstrated to discover fragmentation intensity patterns an...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr070106u

    authors: Huang Y,Tseng GC,Yuan S,Pasa-Tolic L,Lipton MS,Smith RD,Wysocki VH

    更新日期:2008-01-01 00:00:00

  • Intrinsic disorder in nuclear hormone receptors.

    abstract::Many proteins possess intrinsic disorder (ID) and lack a rigid three-dimensional structure in at least part of their sequence. ID has been hypothesized to influence protein-protein and protein-ligand interactions. We calculated ID for nearly 400 vertebrate and invertebrate members of the biomedically important nuclear...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr8003024

    authors: Krasowski MD,Reschly EJ,Ekins S

    更新日期:2008-10-01 00:00:00

  • Discovery and validation of plasma biomarkers for major depressive disorder classification based on liquid chromatography-mass spectrometry.

    abstract::Major depressive disorder (MDD) is a debilitating mental disease with a pronounced impact on the quality of life of many people; however, it is still difficult to diagnose MDD accurately. In this study, a nontargeted metabolomics approach based on ultra-high-performance liquid chromatography equipped with quadrupole t...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.5b00144

    authors: Liu X,Zheng P,Zhao X,Zhang Y,Hu C,Li J,Zhao J,Zhou J,Xie P,Xu G

    更新日期:2015-05-01 00:00:00

  • Exploration of the Fecal Microbiota and Biomarker Discovery in Equine Grass Sickness.

    abstract::Equine grass sickness (EGS) is a frequently fatal disease of horses, responsible for the death of 1 to 2% of the U.K. horse population annually. The etiology of this disease is currently uncharacterized, although there is evidence it is associated with Clostridium botulinum neurotoxin in the gut. Prevention is current...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.7b00784

    authors: Leng J,Proudman C,Darby A,Blow F,Townsend N,Miller A,Swann J

    更新日期:2018-03-02 00:00:00

  • Comparative Glycoproteomic Profiling of Human Body Fluid between Healthy Controls and Patients with Papillary Thyroid Carcinoma.

    abstract::Papillary thyroid carcinoma (PTC) is the most common type of thyroid cancer among women worldwide. It is confirmed mainly by fine-needle aspiration biopsy (FNAB), an invasive diagnostic method. The key proteins responsible for thyroid hormone biosynthesis are glycosylated. Hence, changes in site-specific glycosylation...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.9b00672

    authors: Zhang Y,Zhao W,Zhao Y,Mao Y,Su T,Zhong Y,Wang S,Zhai R,Cheng J,Fang X,Zhu J,Yang H

    更新日期:2020-07-02 00:00:00

  • Proteomic analysis of multiprotein complexes in the thylakoid membrane upon cadmium treatment.

    abstract::The time course of the thylakoid membranes proteomic profile changes upon cadmium (Cd) addition to hydroponic Spinacia oleracea L. plants has been investigated. Two different proteomic approaches have been used: blue native gel electrophoresis followed by SDS-PAGE (2D BN-SDS-PAGE) and sucrose density gradient ultracen...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr800507x

    authors: Fagioni M,D'Amici GM,Timperio AM,Zolla L

    更新日期:2009-01-01 00:00:00

  • Proteogenomic Discovery of a Small, Novel Protein in Yeast Reveals a Strategy for the Detection of Unannotated Short Open Reading Frames.

    abstract::In recent years, proteomic data have contributed to genome annotation efforts, most notably in humans and mice, and spawned a field termed "proteogenomics". Yeast, in contrast with higher eukaryotes, has a small genome, which has lent itself to simpler ORF prediction. Despite this, continual advances in mass spectrome...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.5b00734

    authors: Yagoub D,Tay AP,Chen Z,Hamey JJ,Cai C,Chia SZ,Hart-Smith G,Wilkins MR

    更新日期:2015-12-04 00:00:00

  • Enhanced separation and characterization of deamidated peptides with RP-ERLIC-based multidimensional chromatography coupled with tandem mass spectrometry.

    abstract::Deamidation of asparaginyl residues in proteins produces a mixture of asparaginyl, n-aspartyl, and isoaspartyl residues, which affects the proteins' structure, function, and stability. Thus, it is important to identify and quantify the products to evaluate the effects in biological systems. It is still a challenging t...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr201048c

    authors: Hao P,Qian J,Dutta B,Cheow ES,Sim KH,Meng W,Adav SS,Alpert A,Sze SK

    更新日期:2012-03-02 00:00:00

  • Evaluation of a cleavable stable isotope labeled synthetic peptide for absolute protein quantification using LC-MS/MS.

    abstract::Protein cleavage coupled with isotope dilution mass spectrometry (PC-IDMS) has the potential to provide the absolute concentration of a specific protein, or multiple proteins, in complex mixtures. However, PC-IDMS differs from standard IDMS since the internal standard is a different molecule than the analyte at the st...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr034124x

    authors: Barnidge DR,Hall GD,Stocker JL,Muddiman DC

    更新日期:2004-05-01 00:00:00

  • Top-down targeted proteomics for deep sequencing of tropomyosin isoforms.

    abstract::Tropomyosins (Tm) constitute a family of ubiquitous and highly conserved actin-binding proteins, playing essential roles in a variety of biological processes. Tm isoforms produced by multiple Tm encoding genes and alternatively expressed exons along with post-translational modifications (PTMs) regulate Tm function. Th...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr301054n

    authors: Peng Y,Chen X,Zhang H,Xu Q,Hacker TA,Ge Y

    更新日期:2013-01-04 00:00:00