Differential protein expression in human articular chondrocytes expanded in serum-free media of different medium osmolalities by DIGE.

Abstract:

:Expansion of human articular chondrocytes (HACs) in serum-free medium (SFM) has been shown to be enhanced by the control of medium osmolality. HACs attained better growth when cultured at osmolalities lower than the average osmolality found in articular cartilage in vivo, although the specific causes for this improved expansion were not speculated. The aim of this study was to perform monolayer cultures of HACs in SFM at two different medium osmolalities, 320 and 400 mOsm/kg, and observe changes in protein content. A proteomics approach using differential in gel electrophoresis (DIGE) revealed differences in 20 spots. MALDI-TOF/TOF mass spectrometry identified 18 of the 20 spots. Proteins affected by higher osmolality in SFM were identified and found to function, traditionally, in the cytoskeleton, protection against reactive oxygen species, mRNA biogenesis, and the heat shock response. All of these proteins were correlated with the cell cycle and proliferation, emphasizing the importance of medium osmolality control in the expansion of HACs in SFM. In addition, no protein expression changes were observed regarding chondrogenic markers, which supports our previous result that adjusting medium osmolality in SFM, while enhancing growth, does not deter the tissue-forming capability of HACs.

journal_name

J Proteome Res

authors

Koo J,Kim KI,Min BH,Lee GM

doi

10.1021/pr100136q

subject

Has Abstract

pub_date

2010-05-07 00:00:00

pages

2480-7

issue

5

eissn

1535-3893

issn

1535-3907

journal_volume

9

pub_type

杂志文章
  • 2018 YPIC Challenge: A Case Study in Characterizing an Unknown Protein Sample.

    abstract::For the 2018 YPIC Challenge, contestants were invited to try to decipher two unknown English questions encoded by a synthetic protein expressed in Escherichia coli. In addition to deciphering the sentence, contestants were asked to determine the three-dimensional structure and detect any post-translation modifications...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.9b00384

    authors: Pino L,Lin A,Bittremieux W

    更新日期:2019-11-01 00:00:00

  • Contribution of proteomics to the study of plant pathogenic fungi.

    abstract::Phytopathogenic fungi are one of the most damaging plant parasitic organisms, and can cause serious diseases and important yield losses in crops. The study of the biology of these microorganisms and the interaction with their hosts has experienced great advances in recent years due to the development of moderm, holist...

    journal_title:Journal of proteome research

    pub_type: 杂志文章,评审

    doi:10.1021/pr200873p

    authors: Gonzalez-Fernandez R,Jorrin-Novo JV

    更新日期:2012-01-01 00:00:00

  • Differential nuclear proteomes in response to N-methyl-N'-nitro-N-nitrosoguanidine exposure.

    abstract::As a model carcinogen in studying the mutagenicity and carcinogenicity of N-nitroso alkylating agent, N-methyl-N'-nitro-N-nitrosoguanidine (MNNG) can induce DNA damages and many cellular defensive events, such as DNA repair, G2/M-phase arrest and apoptosis. Noticeably, diverse cellular responses were observed to occur...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr900008n

    authors: Shen J,Zhu H,Xiang X,Yu Y

    更新日期:2009-06-01 00:00:00

  • Mass spectrometric analysis of the phosphorylation levels of the SWI/SNF chromatin remodeling/tumor suppressor proteins ARID1A and Brg1 in ovarian clear cell adenocarcinoma cell lines.

    abstract::Protein phosphorylation is one of the major factors involved in tumor progression and malignancy. We performed exploratory studies aimed at identifying phosphoproteins characteristic to cell lines derived from ovarian clear cell adenocarcinoma (CCA), a highly malignant type of ovarian cancer. Comparative phosphoproteo...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr500470h

    authors: Kimura A,Arakawa N,Hirano H

    更新日期:2014-11-07 00:00:00

  • Proteome analysis of a hepatocyte-specific BIRC5 (survivin)-knockout mouse model during liver regeneration.

    abstract::The Baculoviral IAP repeat-containing protein 5 (BIRC5), also known as inhibitor of apoptosis protein survivin, is a member of the chromosomal passenger complex and a key player in mitosis. To investigate the function of BIRC5 in liver regeneration, we analyzed a hepatocyte-specific BIRC5-knockout mouse model using a ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr401188r

    authors: Bracht T,Hagemann S,Loscha M,Megger DA,Padden J,Eisenacher M,Kuhlmann K,Meyer HE,Baba HA,Sitek B

    更新日期:2014-06-06 00:00:00

  • Effects of Histidine Supplementation on Global Serum and Urine 1H NMR-based Metabolomics and Serum Amino Acid Profiles in Obese Women from a Randomized Controlled Study.

    abstract::The aim of current study was to investigate the metabolic changes associated with histidine supplementation in serum and urine metabolic signatures and serum amino acid (AA) profiles. Serum and urine 1H NMR-based metabolomics and serum AA profiles were employed in 32 and 37 obese women with metabolic syndrome (MetS) i...

    journal_title:Journal of proteome research

    pub_type: 杂志文章,随机对照试验

    doi:10.1021/acs.jproteome.7b00030

    authors: Du S,Sun S,Liu L,Zhang Q,Guo F,Li C,Feng R,Sun C

    更新日期:2017-06-02 00:00:00

  • N-linked glycan structures of the human Fcγ receptors produced in NS0 cells.

    abstract::Immune recognition of nonself is coordinated through complex mechanisms involving both innate and adaptive responses. Circulating antibodies communicate with effector cells of the innate immune system through surface receptors known as Fcγ receptors (FcγRs). The FcγRs are single-pass transmembrane glycoproteins respon...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr400344h

    authors: Cosgrave EF,Struwe WB,Hayes JM,Harvey DJ,Wormald MR,Rudd PM

    更新日期:2013-08-02 00:00:00

  • Oxidized transthyretin in amniotic fluid as an early marker of preeclampsia.

    abstract::Preeclampsia is a pregnancy-specific hypertensive syndrome and a major cause of maternal and fetal morbidity and mortality. At the present time, no reliable screening tests to identify women at risk are available. We have compared the amniotic fluids (AF) proteomic maps of five preeclamptic patients with those of five...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr060315z

    authors: Vascotto C,Salzano AM,D'Ambrosio C,Fruscalzo A,Marchesoni D,di Loreto C,Scaloni A,Tell G,Quadrifoglio F

    更新日期:2007-01-01 00:00:00

  • Metabolomics in cerebrospinal fluid of patients with amyotrophic lateral sclerosis: an untargeted approach via high-resolution mass spectrometry.

    abstract::Amyotrophic lateral sclerosis (ALS) is characterized by the absence of reliable diagnostic biomarkers. The aim of the study was to (i) devise an untargeted metabolomics methodology that reliably compares cerebrospinal fluid (CSF) from ALS patients and controls by liquid chromatography coupled to high-resolution mass s...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr400376e

    authors: Blasco H,Corcia P,Pradat PF,Bocca C,Gordon PH,Veyrat-Durebex C,Mavel S,Nadal-Desbarats L,Moreau C,Devos D,Andres CR,Emond P

    更新日期:2013-08-02 00:00:00

  • Quantitative Proteomics Reveals Differences in the Response of Neutrophils Isolated from Healthy or Diabetic Subjects to Infection with Capsule-Variant Burkholderia thailandensis.

    abstract::In Thailand, diabetes mellitus is the most significant risk factor for melioidosis, a severe disease caused by Burkholderia pseudomallei. In this study, neutrophils isolated from healthy or diabetic subjects were infected with B. thailandensis E555, a variant strain with a B. pseudomallei-like capsular polysaccharide ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.9b00166

    authors: Withatanung P,Kurian D,Tangjittipokin W,Plengvidhya N,Titball RW,Korbsrisate S,Stevens JM

    更新日期:2019-07-05 00:00:00

  • Proteomic analysis of eccrine sweat: implications for the discovery of schizophrenia biomarker proteins.

    abstract::Liquid chromatography-tandem mass spectrometry (LC-MS/MS) and multiple reaction monitoring mass spectrometry (MRM-MS) proteomics analyses were performed on eccrine sweat of healthy controls, and the results were compared with those from individuals diagnosed with schizophrenia (SZ). This is the first large scale study...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr2007957

    authors: Raiszadeh MM,Ross MM,Russo PS,Schaepper MA,Zhou W,Deng J,Ng D,Dickson A,Dickson C,Strom M,Osorio C,Soeprono T,Wulfkuhle JD,Petricoin EF,Liotta LA,Kirsch WM

    更新日期:2012-04-06 00:00:00

  • Saccharomyces cerevisiae mitoproteome plasticity in response to recombinant alternative ubiquinol oxidase.

    abstract::The energy-dissipating alternative oxidase (AOX) from Hansenula anomala was expressed in Saccharomyces cerevisiae. The recombinant AOX was functional. A comparative analysis by two-dimensional differential in-gel electrophoresis (2D-DIGE) of mitochondrial protein patterns found in wild-type and recombinant AOX strains...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr050346e

    authors: Mathy G,Navet R,Gerkens P,Leprince P,De Pauw E,Sluse-Goffart CM,Sluse FE,Douette P

    更新日期:2006-02-01 00:00:00

  • Detergent-based but gel-free method allows identification of several hundred membrane proteins in single LC-MS runs.

    abstract::Detergents are indispensable solubilizing agents in the purification and analysis of membrane proteins. For mass spectrometric identification of proteins, it is essential that detergents are removed prior to analysis, necessitating an in-gel digestion step. Here, we report a procedure that allows use of detergents and...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr800412j

    authors: Nagaraj N,Lu A,Mann M,Wiśniewski JR

    更新日期:2008-11-01 00:00:00

  • Comparative proteomic analysis of chronic myelogenous leukemia cells: inside the mechanism of imatinib resistance.

    abstract::Imatinib is the first molecular targeted therapy that has shown clinical success, but imatinib acquired resistance, although a rare event, is critical during the therapy of chronic myelogenous leukaemia (CML). With the aim of better understanding the molecular mechanisms accompanying acquisition of resistance to this ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr0603708

    authors: Ferrari G,Pastorelli R,Buchi F,Spinelli E,Gozzini A,Bosi A,Santini V

    更新日期:2007-01-01 00:00:00

  • Proteomic analysis of left ventricular remodeling in an experimental model of heart failure.

    abstract::The development of chronic heart failure (CHF) following myocardial infarction is characterized by progressive alterations of left ventricle (LV) structure and function called left ventricular remodeling (LVR), but the mechanism of LVR remains still unclear. Moreover, information concerning the global alteration prote...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr800409u

    authors: Cieniewski-Bernard C,Mulder P,Henry JP,Drobecq H,Dubois E,Pottiez G,Thuillez C,Amouyel P,Richard V,Pinet F

    更新日期:2008-11-01 00:00:00

  • Proteomics and leukocytes: an approach to understanding potential molecular mechanisms of inflammatory responses.

    abstract::Leukocytes play an important role in the progression of disease and leukocyte-derived proteins are associated with the pathogenesis of the disease. Leukocyte activation causes production of inflammatory mediators, over-expression of cell surface adhesion molecules, and an increase in migration and infiltration, phagoc...

    journal_title:Journal of proteome research

    pub_type: 杂志文章,评审

    doi:10.1021/pr0499601

    authors: Wang X,Zhao H,Andersson R

    更新日期:2004-09-01 00:00:00

  • Proteome of metastatic canine mammary carcinomas: similarities to and differences from human breast cancer.

    abstract::Mammary tumors are a major health threat to women and female dogs. In both, metastasis of the primary tumor to distant organs is the most common cause of tumor-related death. Nevertheless, the molecular mechanisms of tumor metastasis are far from being understood, and it is still unknown why some human and canine carc...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr100671c

    authors: Klopfleisch R,Klose P,Weise C,Bondzio A,Multhaup G,Einspanier R,Gruber AD

    更新日期:2010-12-03 00:00:00

  • Lysine and Arginine Protein Post-translational Modifications by Enhanced DIA Libraries: Quantification in Murine Liver Disease.

    abstract::Proteoforms containing post-translational modifications (PTMs) represent a degree of functional diversity only harnessed through analytically precise simultaneous quantification of multiple PTMs. Here we present a method to accurately differentiate an unmodified peptide from its PTM-containing counterpart through data...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.0c00685

    authors: Robinson AE,Binek A,Venkatraman V,Searle BC,Holewinski RJ,Rosenberger G,Parker SJ,Basisty N,Xie X,Lund PJ,Saxena G,Mato JM,Garcia BA,Schilling B,Lu SC,Van Eyk JE

    更新日期:2020-10-02 00:00:00

  • Computational and Mass-Spectrometry-Based Workflow for the Discovery and Validation of Missing Human Proteins: Application to Chromosomes 2 and 14.

    abstract::In the framework of the C-HPP, our Franco-Swiss consortium has adopted chromosomes 2 and 14, coding for a total of 382 missing proteins (proteins for which evidence is lacking at protein level). Over the last 4 years, the French proteomics infrastructure has collected high-quality data sets from 40 human samples, incl...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr5010345

    authors: Carapito C,Lane L,Benama M,Opsomer A,Mouton-Barbosa E,Garrigues L,Gonzalez de Peredo A,Burel A,Bruley C,Gateau A,Bouyssié D,Jaquinod M,Cianferani S,Burlet-Schiltz O,Van Dorsselaer A,Garin J,Vandenbrouck Y

    更新日期:2015-09-04 00:00:00

  • Identification of kalirin-7 as a potential post-synaptic density signaling hub.

    abstract::Kalirin-7 (Kal7), a multifunctional Rho GDP/GTP exchange factor (GEF) for Rac1 and RhoG, is embedded in the postsynaptic density at excitatory synapses, where it participates in the formation and maintenance of dendritic spines. Kal7 has been implicated in long-term potentiation, fear memories, and addiction-like beha...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr200088w

    authors: Kiraly DD,Stone KL,Colangelo CM,Abbott T,Wang Y,Mains RE,Eipper BA

    更新日期:2011-06-03 00:00:00

  • Quantitative analysis of signaling networks across differentially embedded tumors highlights interpatient heterogeneity in human glioblastoma.

    abstract::Glioblastoma multiforme (GBM) is the most aggressive malignant primary brain tumor, with a dismal mean survival even with the current standard of care. Although in vitro cell systems can provide mechanistic insight into the regulatory networks governing GBM cell proliferation and migration, clinical samples provide a ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr500418w

    authors: Johnson H,White FM

    更新日期:2014-11-07 00:00:00

  • Sputum proteomics identifies elevated PIGR levels in smokers and mild-to-moderate COPD.

    abstract::Chronic obstructive pulmonary disease (COPD) is one of the leading causes of morbidity and mortality around the world. However, the exact mechanisms leading to COPD and its progression are still poorly understood. In this study, induced sputum was analyzed by cysteine-specific two-dimensional difference gel electropho...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr2006395

    authors: Ohlmeier S,Mazur W,Linja-Aho A,Louhelainen N,Rönty M,Toljamo T,Bergmann U,Kinnula VL

    更新日期:2012-02-03 00:00:00

  • Distinct Gut Microbiota and Serum Metabolites in Response to Weight Loss Induced by Either Dairy or Exercise in a Rodent Model of Obesity.

    abstract::Energy imbalance is a primary cause of obesity. While the classical approach to attenuate weight gain includes an increase in energy expenditure through exercise, dietary manipulation such as the inclusion of dairy products has also been proven effective. In the present study, we explored the potential mechanisms by w...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.9b00304

    authors: Mayengbam S,Mickiewicz B,Trottier SK,Mu C,Wright DC,Reimer RA,Vogel HJ,Shearer J

    更新日期:2019-11-01 00:00:00

  • Integrity of Glycosylation Processing of a Glycan-Depleted Trimeric HIV-1 Immunogen Targeting Key B-Cell Lineages.

    abstract::Broadly neutralizing antibodies (bNAbs) that target the trimeric HIV-1 envelope glycoprotein spike (Env) are tools that can guide the design of recombinant Env proteins intended to engage the predicted human germline precursors of bNAbs (gl-bNAbs). The protein components of gl-bNAb epitopes are often masked by glycans...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.7b00639

    authors: Behrens AJ,Kumar A,Medina-Ramirez M,Cupo A,Marshall K,Cruz Portillo VM,Harvey DJ,Ozorowski G,Zitzmann N,Wilson IA,Ward AB,Struwe WB,Moore JP,Sanders RW,Crispin M

    更新日期:2018-03-02 00:00:00

  • Comparison of protein immunoprecipitation-multiple reaction monitoring with ELISA for assay of biomarker candidates in plasma.

    abstract::Quantitative analysis of protein biomarkers in plasma is typically done by ELISA, but this method is limited by the availability of high-quality antibodies. An alternative approach is protein immunoprecipitation combined with multiple reaction monitoring mass spectrometry (IP-MRM). We compared IP-MRM to ELISA for the ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr400877e

    authors: Lin D,Alborn WE,Slebos RJ,Liebler DC

    更新日期:2013-12-06 00:00:00

  • Highly altered protein expression profile in the adriamycin resistant MCF-7 cell line.

    abstract::The protein expression pattern in the cytosol fraction of the adriamycin resistant MCF-7 cell line (MCF-7/ADR) was compared to that of the parental MCF-7 cell line using two-dimensional gel electrophoresis and mass spectrometry. Twenty proteins with altered abundances were identified and studied in MCF-7/ADR. Both up ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr0340577

    authors: Gehrmann ML,Fenselau C,Hathout Y

    更新日期:2004-05-01 00:00:00

  • Analysis of genomic and proteomic data using advanced literature mining.

    abstract::High-throughput technologies, such as proteomic screening and DNA micro-arrays, produce vast amounts of data requiring comprehensive analytical methods to decipher the biologically relevant results. One approach would be to manually search the biomedical literature; however, this would be an arduous task. We developed...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr0340227

    authors: Hu Y,Hines LM,Weng H,Zuo D,Rivera M,Richardson A,LaBaer J

    更新日期:2003-07-01 00:00:00

  • Comprehensive Examination of the Mouse Lung Metabolome Following Mycobacterium tuberculosis Infection Using a Multiplatform Mass Spectrometry Approach.

    abstract::The mechanisms whereby Mycobacterium tuberculosis (Mtb) rewires the host metabolism in vivo are surprisingly unexplored. Here, we used three high-resolution mass spectrometry platforms to track altered lung metabolic changes associated with Mtb infection of mice. The multiplatform data sets were merged using consensus...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.9b00868

    authors: Fernández-García M,Rey-Stolle F,Boccard J,Reddy VP,García A,Cumming BM,Steyn AJC,Rudaz S,Barbas C

    更新日期:2020-05-01 00:00:00

  • Metabolomic Analysis of Gastric Cancer Progression within the Correa's Cascade Using Ultraperformance Liquid Chromatography-Mass Spectrometry.

    abstract::Gastric cancer (GC) is among the most common cancers worldwide. Gastric carcinogenesis is a multistep and multifactorial process beginning with chronic gastritis induced by Helicobacter pylori (H. pylori) infection. This process is often described via a sequence of events known as Correas's cascade, a stepwise progres...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.6b00281

    authors: Kuligowski J,Sanjuan-Herráez D,Vázquez-Sánchez MA,Brunet-Vega A,Pericay C,Ramírez-Lázaro MJ,Lario S,Gombau L,Junquera F,Calvet X,Quintás G

    更新日期:2016-08-05 00:00:00

  • Ethylenediaminetetraacetic acid increases identification rate of phosphoproteomics in real biological samples.

    abstract::We have developed a novel approach to enhance phosphopeptide identification in liquid chromatography/mass spectrometry (LC/MS)-based phosphoproteomics. After enrichment of phosphopeptides with immobilized metal affinity chromatography (IMAC) and titanium dioxide (TiO(2)) microcolumns, samples were coinjected with ethy...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr900918h

    authors: Nakamura T,Myint KT,Oda Y

    更新日期:2010-03-05 00:00:00