Nutrition proteomics and biomarker discovery.

Abstract:

:Baukje de Roos is a principal investigator at the University of Aberdeen, Rowett Institute of Nutrition and Health. She investigates mechanisms through which dietary fats and fatty acids, and also polyphenols, affect parameters involved in the development of heart disease in vivo. This is achieved not only by measuring their effect on conventional risk markers for heart disease but also by assessing their effect on new markers that are being developed through proteomic and mass spectrometry methods. She obtained her PhD in Human Nutrition at Wageningen University, The Netherlands, in January 2000, after which she was appointed as a post-doctoral research fellow at the Department of Vascular Biochemistry, Glasgow Royal Infirmary, in collaboration with GlaxoSmithKline. In June 2001 she joined the Rowett Research Institute in Aberdeen. She is currently working for the University of Aberdeen, where her research is funded by the Scottish Government Rural and Environment Research and Analysis Directorate (RERAD). She is an active member of the European Nutrigenomics Organisation (NuGO), an EU-funded Network of Excellence, which merges the nutrigenomics activities of its 23 partners across Europe.

journal_name

Expert Rev Proteomics

authors

de Roos B

doi

10.1586/epr.09.52

subject

Has Abstract

pub_date

2009-08-01 00:00:00

pages

349-51

issue

4

eissn

1478-9450

issn

1744-8387

journal_volume

6

pub_type

面试
  • Tissue and serum proteomic profiling for diagnostic and prognostic bladder cancer biomarkers.

    abstract::A panel of biomarkers for the early detection of bladder cancer has not yet been identified. Many different molecules, including DNA, RNA or proteins have been reported but none have provided adequate sensitivity for a single-tier screening test or a test to replace cystoscopy. Therefore, multimarker panels are discus...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1586/epr.10.82

    authors: Schwamborn K,Gaisa NT,Henkel C

    更新日期:2010-12-01 00:00:00

  • Investigation of therapy resistance mechanisms in myeloid leukemia by protein profiling of bone marrow extracellular fluid.

    abstract::In spite of the effective chronic myeloid leukemia (CML) therapy, a small percentage will fail on therapy and develop acute myeloid leukemia-like blast crisis. Understanding the underlying biology of therapy resistance is probably needed to develop better blood cancer therapy, and CML may be an ideal disease model for...

    journal_title:Expert review of proteomics

    pub_type: 评论,杂志文章

    doi:10.1586/epr.12.55

    authors: Gjertsen BT,Wiig H

    更新日期:2012-12-01 00:00:00

  • Proteomic studies of common chronic pain conditions - a systematic review and associated network analyses.

    abstract:INTRODUCTION:The lack of biomarkers indicating involved nociceptive and/or pain mechanisms makes diagnostic procedures problematic. Clinical pain research has begun to use proteomics. AREAS COVERED:This systematic review covers proteomic studies of chronic pain cohorts and in relation to clinical variables. Searches i...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章

    doi:10.1080/14789450.2020.1797499

    authors: Gerdle B,Ghafouri B

    更新日期:2020-06-01 00:00:00

  • Mass spectrometric approaches for characterizing bacterial proteomes.

    abstract::The emergence of advanced liquid chromatography mass spectrometry technologies for characterizing very complex mixtures of proteins has greatly propelled the field of proteomics, the goal of which is the simultaneous examination of all the proteins expressed by an organism. This research area represents a paradigm shi...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1586/14789450.1.4.433

    authors: VerBerkmoes NC,Connelly HM,Pan C,Hettich RL

    更新日期:2004-12-01 00:00:00

  • The future of prenatal diagnosis: karyotype, microarray or both? Technical and ethical considerations.

    abstract::Prenatal diagnosis is now offered to high-risk pregnancies, including advanced maternal age, ultrasound anomalies and positive Down's syndrome screening, and karyotype on cultured fetal material is the test of choice to screen these pregnancies. However, microscope analysis can only detect gross chromosome abnormaliti...

    journal_title:Expert review of proteomics

    pub_type: 评论,杂志文章

    doi:10.1586/epr.13.9

    authors: Novelli A,Cavalli P,Bernardini L

    更新日期:2013-04-01 00:00:00

  • Proteomics of proteasome complexes and ubiquitinated proteins.

    abstract::Ubiquitin-proteasome-mediated protein degradation is central to the regulation of many important biological processes, including cell cycle progression, apoptosis and DNA repair. Recognition and degradation of ubiquitinated substrates by the 26S proteasome is tightly regulated to maintain normal cell growth. Disruptio...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1586/14789450.4.5.649

    authors: Wang X,Guerrero C,Kaiser P,Huang L

    更新日期:2007-10-01 00:00:00

  • Helicobacter pylori immunoproteomics in gastric cancer and gastritis of the carcinoma phenotype.

    abstract::Helicobacter pylori infection is linked to the development of gastric cancer. Atrophic body gastritis is considered the first important step in the histogenesis of such neoplasia. H. pylori infection is involved in the induction of atrophic body gastritis, but documentation of H. pylori infection is difficult because ...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1586/epr.10.5

    authors: Lahner E,Bernardini G,Santucci A,Annibale B

    更新日期:2010-04-01 00:00:00

  • Best practice of identification and proteomic analysis of extracellular vesicles in human health and disease.

    abstract:INTRODUCTION:Extracellular vesicles are emerging sources of biomarkers for modern preventive and precision medicine. Extracellular vesicles in body fluids offer a unique opportunity for integrative biomarker approaches due to their complex biocargo that includes proteins, lipids, nucleic acids and metabolites. Mass spe...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1080/14789450.2017.1392244

    authors: Sódar BW,Kovács Á,Visnovitz T,Pállinger É,Vékey K,Pocsfalvi G,Turiák L,Buzás EI

    更新日期:2017-12-01 00:00:00

  • Protein biomarkers for subtyping breast cancer and implications for future research.

    abstract:INTRODUCTION:Breast cancer subtypes are currently defined by a combination of morphologic, genomic, and proteomic characteristics. These subtypes provide a molecular portrait of the tumor that aids diagnosis, prognosis, and treatment escalation/de-escalation options. Gene expression signatures describing intrinsic brea...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1080/14789450.2018.1421071

    authors: Mueller C,Haymond A,Davis JB,Williams A,Espina V

    更新日期:2018-02-01 00:00:00

  • Protein-protein cross-linking and human health: the challenge of elucidating with mass spectrometry.

    abstract:INTRODUCTION:In several biomedical research fields, the cross-linking of peptides and proteins has an important impact on health and wellbeing. It is therefore of crucial importance to study this class of post-translational modifications in detail. The huge potential of mass spectrometric technologies in the mapping of...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1080/14789450.2017.1362336

    authors: Maes E,Dyer JM,McKerchar HJ,Deb-Choudhury S,Clerens S

    更新日期:2017-10-01 00:00:00

  • Unravelling the biology of chromatin in health and cancer using proteomic approaches.

    abstract:INTRODUCTION:Chromatin remodeling complexes play important roles in the control of genome regulation in both normal and diseased states, and are therefore critical components for the regulation of epigenetic states in cells. Given the role epigenetics plays in cancer, for example, chromatin remodeling complexes are rou...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1080/14789450.2017.1374860

    authors: Eubanks CG,Dayebgadoh G,Liu X,Washburn MP

    更新日期:2017-10-01 00:00:00

  • Transcriptomic profiling in Cutaneous Leishmaniasis patients.

    abstract:INTRODUCTION:Cutaneous leishmaniasis (CL), caused by different Leishmania parasite species, is associated with parasite-induced immune-mediated skin inflammation and ulceration. Whereas many CL studies focus on gene expression signatures in mouse models, the transcriptional response driving human patients in the field ...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章

    doi:10.1080/14789450.2020.1812390

    authors: Masoudzadeh N,Mizbani A,Rafati S

    更新日期:2020-01-01 00:00:00

  • Understanding type 1 diabetes through proteomics.

    abstract:INTRODUCTION:Auto-immunity against pancreatic beta-cells leads to an absolute shortage of the hormone insulin, resulting in hyperglycemia and the onset of type 1 diabetes (T1D). Proteomic approaches have been used to elucidate the mechanisms of beta-cell dysfunction and death. Areas covered: In the present review, we d...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1080/14789450.2017.1345633

    authors: Crèvecoeur I,Vig S,Mathieu C,Overbergh L

    更新日期:2017-07-01 00:00:00

  • An update on the routine application of MALDI-TOF MS in clinical microbiology.

    abstract::Introduction: Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) has entered clinical diagnostics and is today a generally accepted and integral part of the workflow for microbial identification. MALDI-TOF MS identification systems received approval from national and internatio...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章

    doi:10.1080/14789450.2019.1645603

    authors: Welker M,Van Belkum A,Girard V,Charrier JP,Pincus D

    更新日期:2019-08-01 00:00:00

  • Sperm proteomics: potential impact on male infertility treatment.

    abstract::Spermatozoa are unique cells that have highly compact DNA, motility (and hypermotility) patterns, a specific morphology, localized mitochondria and an apical acrosome. They are the end product of a dynamic process termed spermatogenesis. Sperm are therefore produced with specific proteins in order to effect different ...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1586/14789450.2016.1151357

    authors: Agarwal A,Bertolla RP,Samanta L

    更新日期:2016-01-01 00:00:00

  • The role of proteomics in assessing beta-cell dysfunction and death in type 1 diabetes.

    abstract::Introduction: Type 1 diabetes (T1D) is characterized by autoimmune-induced dysfunction and destruction of the pancreatic beta cells. Unfortunately, this process is poorly understood, and the current best treatment for type 1 diabetes is the administration of exogenous insulin. To better understand these mechanisms and...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章

    doi:10.1080/14789450.2019.1634548

    authors: Nakayasu ES,Qian WJ,Evans-Molina C,Mirmira RG,Eizirik DL,Metz TO

    更新日期:2019-07-01 00:00:00

  • The impact of microgravity-based proteomics research.

    abstract::Proteomics is performed in microgravity research in order to determine protein alterations occurring qualitatively and quantitatively, when single cells or whole organisms are exposed to real or simulated microgravity. To this purpose, antibody-dependent (Western blotting, flow cytometry, Luminex(®) technology) and an...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章

    doi:10.1586/14789450.2014.926221

    authors: Grimm D,Pietsch J,Wehland M,Richter P,Strauch SM,Lebert M,Magnusson NE,Wise P,Bauer J

    更新日期:2014-08-01 00:00:00

  • Advances in high-resolution quantitative proteomics: implications for clinical applications.

    abstract::The advances in high-resolution mass spectrometry instrumentation, capable of accurate mass measurement and fast acquisition, have enabled new approaches for targeted quantitative proteomics. More specifically, analyses performed on quadrupole-orbitrap mass spectrometers operated in parallel reaction monitoring (PRM) ...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1586/14789450.2015.1069188

    authors: Gallien S,Domon B

    更新日期:2015-01-01 00:00:00

  • The role of mass spectrometry in the characterization of biologic protein products.

    abstract:INTRODUCTION:Mass spectrometry (MS) is widely used in the characterization of biomolecules including peptide and protein therapeutics. These biotechnology products have seen rapid growth over the past few decades and continue to dominate the global pharmaceutical market. Advances in MS instrumentation and techniques ha...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1080/14789450.2018.1469982

    authors: Rathore D,Faustino A,Schiel J,Pang E,Boyne M,Rogstad S

    更新日期:2018-05-01 00:00:00

  • Recent mass spectrometry-based proteomics for biomarker discovery in lung cancer, COPD, and asthma.

    abstract:INTRODUCTION:Lung cancer and related diseases have been one of the most common causes of deaths worldwide. Genomic-based biomarkers may hardly reflect the underlying dynamic molecular mechanism of functional protein interactions, which is the center of a disease. Recent developments in mass spectrometry (MS) have made ...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1080/14789450.2017.1304215

    authors: Fujii K,Nakamura H,Nishimura T

    更新日期:2017-04-01 00:00:00

  • Does O-GlcNAc play a role in neurodegenerative diseases?

    abstract::There are several lines of evidence that the modification of proteins by cytosolic- and nuclear-specific O-linked N-acetylglucosamine (O-GlcNAc) glycosylation is closely related to neuropathologies, particularly Alzheimer's disease. Several neuronal proteins have been identified as being modified with O-GlcNAc; these ...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1586/14789450.2.2.265

    authors: Lefebvre T,Guinez C,Dehennaut V,Beseme-Dekeyser O,Morelle W,Michalski JC

    更新日期:2005-04-01 00:00:00

  • A decade of proteomics accomplished! Central and Eastern European Proteomic Conference (CEEPC) celebrates its 10th Anniversary in Budapest, Hungary.

    abstract::The Central and Eastern European Proteomic Conference (CEEPC) proudly celebrated its 10th Anniversary with an exciting scientific program inclusive of proteome, proteomics and systems biology in Budapest, Hungary. Since 2007, CEEPC has represented 'state-of the-art' proteomics in and around Central and Eastern Europe ...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章

    doi:10.1080/14789450.2017.1339604

    authors: Gadher SJ,Drahos L,Vékey K,Kovarova H

    更新日期:2017-07-01 00:00:00

  • Proteomic analysis in allergy and intolerance to wheat products.

    abstract::Owing to its extensive use in the human diet, wheat is among the most common causes of food-related allergies and intolerances. Allergies to wheat are provoked by ingestion, inhalation or contact with either the soluble or the insoluble gluten proteins in wheat. Gluten proteins, and particularly the gliadin fraction, ...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1586/epr.10.98

    authors: Mamone G,Picariello G,Addeo F,Ferranti P

    更新日期:2011-02-01 00:00:00

  • Global views of proteasome-mediated degradation by mass spectrometry.

    abstract::Introduction: Degradation of proteins by cellular proteasomes is critical for the fidelity of protein homeostasis and proper cell function. Indeed, perturbations in proteasome function, as well as the degradation of specific substrates, are associated with a variety of human diseases. Yet, monitoring and analyzing pro...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章

    doi:10.1080/14789450.2019.1645601

    authors: Javitt A,Merbl Y

    更新日期:2019-07-19 00:00:00

  • Emerging protein array technologies for proteomics.

    abstract::Numerous efforts have been made to understand fundamental biology of diseases based on gene expression. However, the relationship between gene expression and onset of disease often remains obscure. The great advances in protein microarrays allow us to investigate this unclear question through protein profiles, which a...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1586/epr.12.67

    authors: Lee JR,Magee DM,Gaster RS,LaBaer J,Wang SX

    更新日期:2013-02-01 00:00:00

  • Update on: proteome analysis in thyroid pathology - part II: overview of technical and clinical enhancement of proteomic investigation of the thyroid lesions.

    abstract:INTRODUCTION:An accurate diagnostic classification of thyroid lesions remains an important clinical aspect that needs to be addressed in order to avoid 'diagnostic' thyroidectomies. Among the several 'omics' techniques, proteomics is playing a pivotal role in the search for diagnostic markers. In recent years, differen...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1080/14789450.2018.1532793

    authors: Piga I,Casano S,Smith A,Tettamanti S,Leni D,Capitoli G,Pincelli AI,Scardilli M,Galimberti S,Magni F,Pagni F

    更新日期:2018-11-01 00:00:00

  • Complementary methods to assist subcellular fractionation in organellar proteomics.

    abstract::Organellar proteomics aims to describe the full complement of proteins of subcellular structures and organelles. When compared with whole-cell or whole-tissue proteomes, the more focused results from subcellular proteomic studies have yielded relatively simpler datasets from which biologically relevant information can...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1586/14789450.5.4.603

    authors: Gauthier DJ,Lazure C

    更新日期:2008-08-01 00:00:00

  • 2D gel blood serum biomarkers reveal differential clinical proteomics of the neurodegenerative diseases.

    abstract::This review addresses the challenges of neuroproteomics and recent progress in biomarkers and tests for neurodegenerative diseases, including Alzheimer's disease, Parkinson's disease and amyotrophic lateral sclerosis. The review will discuss how the application of quantitative 2D gel electrophoresis, combined with app...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1586/14789450.3.1.45

    authors: Sheta EA,Appel SH,Goldknopf IL

    更新日期:2006-02-01 00:00:00

  • Advances in cell-free protein array methods.

    abstract:INTRODUCTION:Cell-free protein microarrays represent a special form of protein microarray which display proteins made fresh at the time of the experiment, avoiding storage and denaturation. They have been used increasingly in basic and translational research over the past decade to study protein-protein interactions, t...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章

    doi:10.1080/14789450.2018.1415146

    authors: Yu X,Petritis B,Duan H,Xu D,LaBaer J

    更新日期:2018-01-01 00:00:00

  • Recent advances in proteomic profiling of pancreatic ductal adenocarcinoma and the road ahead.

    abstract:INTRODUCTION:Pancreatic ductal adenocarcinoma (PDAC) is one of the deadliest cancers worldwide. However, there remain many unmet clinical needs, from diagnosis to treatment strategies. The inherent complexity of the molecular characteristics of PDAC has made it difficult to meet these challenges, rendering proteomic pr...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1080/14789450.2017.1382356

    authors: Kim H,Park J,Wang JI,Kim Y

    更新日期:2017-11-01 00:00:00