Positive and negative regulatory elements in the dnaA-dnaN-recF operon of Escherichia coli.

Abstract:

:The recF gene of E coli lies within a cluster of genes which play essential roles in DNA replication; the gene order is dnaA dnaN recF gyrB. Each of these genes has its own promoters which, with the exception of dnaA promoters, reside entirely within the translated region of the respective preceding gene. In this report, we analyze the effect of the dnaA and dnaN promoters on recF expression by translational fusions between recF and the lacZ reporter gene. Our results indicate that recF is a distal gene of the dnaA operon, and support the previous proposal that dnaN and recF constitute a transcriptional unit under control of the dnaN promoters. They also suggest that dnaA, dnaN and recF are predominantly expressed from the same mRNA although transcriptional and/or post-transcriptional mechanisms should be specifically involved in lowering expression of the recF gene. Recently, we have localized 3 tandem transcription termination sites in the second half of the dnaN gene, downstream from the recF promoters. Neither of them shows the typical features of simple terminators and apparently they do not work in a minimal system of in vitro transcription. In this report, we present evidence that only one of them is dependent on the Rho protein. Although the operon structure allows coordinate expression of dnaA, dnaN and recF, the presence of internal promoters (the dnaN and recF promoters), which appear to be inducible by DNA damage, and intracistronic terminators, whose activity is inversely proportional to the efficiency of translation, permits expression of individual genes to be independently regulated in response to altered growth conditions.

journal_name

Biochimie

journal_title

Biochimie

authors

Pérez-Roger I,García-Sogo M,Navarro-Aviñó JP,López-Acedo C,Macián F,Armengod ME

doi

10.1016/0300-9084(91)90220-u

subject

Has Abstract

pub_date

1991-02-01 00:00:00

pages

329-34

issue

2-3

eissn

0300-9084

issn

1638-6183

pii

0300-9084(91)90220-U

journal_volume

73

pub_type

杂志文章
  • Inhibition of potato spindle tuber viroid (PSTVd) infection with DNA oligonucleotides.

    abstract::The effects of DNA oligonucleotides complementary to potato spindle tuber viroid (PSTVd) on viroid infection were investigated. The oligonucleotides were used to form hybrids with PSTVd in the infection mixture. A 75% reduction of viroid infection was found when an oligonucleotide complementary to nucleotides 79-110 o...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/0300-9084(93)90026-o

    authors: Matousek J,Trnĕná L,Arnold L,Dĕdic P,Rakouský S,Steger G,Riesner D

    更新日期:1993-01-01 00:00:00

  • Affinity chromatography of the uterine estradiol receptor on estradiol-PAB-cellulose: an artefact.

    abstract::Estradiol-PAB-cellulose, an easily prepared adsorbent, has been proposed to purify the uterine estradiol receptor according to the principle of biospecific affinity chromatography. It apparently removes all hormone binding sites when cytosol preparations are incubated with it. A systematic study of this adsorbent was ...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/s0300-9084(76)80317-3

    authors: Best-Belpomme M,Richard-Foy H,Secco-Millet C,Baulieu EE

    更新日期:1976-01-01 00:00:00

  • Reactivity of trypsin in reverse micelles: pH-effects on the W0 versus enzyme activity profiles.

    abstract::pH-Dependence of hydrolytic activity of trypsin has been studied in cationic reverse micellar system of cetyltrimethylammonium bromide (CTAB) in (50% v/v) chloroform/isooctane using a positively charged substrate N(alpha)-benzoyl-L-arginine ethyl ester (BAEE). The pH of the medium was varied from 4.0 to 8.5 with addit...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/s0300-9084(99)80007-8

    authors: Fadnavis NW,Babu RL,Deshpande A

    更新日期:1998-12-01 00:00:00

  • [Cyclic nucleotide phosphodiesterase in vertebrates].

    abstract::The cellular concentration of cyclic nucleotides is largely dependent upon the activity of the enzymatic system responsible for their degradation: cyclic nucleotide phosphodiesterase. This enzymatic system thus plays a crucial role in the regulation of the multiple functions which are modulated by cyclic nucleotides i...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/0300-9084(84)90203-7

    authors: Nemoz G,Prigent AF

    更新日期:1984-02-01 00:00:00

  • Primary structures and partial toxicological characterization of two phospholipases A2 from Micrurus mipartitus and Micrurus dumerilii coral snake venoms.

    abstract::Snake venom phospholipases A2 (PLA2) share high sequence identities and a conserved structural scaffold, but show important functional differences. Only a few PLA2s have been purified and characterized from coral snake (Micrurus spp.) venoms, and their role in envenomation remains largely unknown. In this report, we d...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2017.03.008

    authors: Rey-Suárez P,Núñez V,Saldarriaga-Córdoba M,Lomonte B

    更新日期:2017-06-01 00:00:00

  • Some novel transcription attenuation mechanisms used by bacteria.

    abstract::A variety of transcription attenuation mechanisms are used by bacteria to regulate gene and operon expression. This review summarizes previous and current studies designed to elucidate the features of the specific attenuation mechanisms that regulate expression of the tryptophanase (tna) operon of Escherichia coli and...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/s0300-9084(97)86725-9

    authors: Yanofsky C,Konan KV,Sarsero JP

    更新日期:1996-01-01 00:00:00

  • Methionyl-tRNA synthetase from E. coli: direct evidence for exchange of protomers in the dimeric enzyme by using deuteration and small-angle neutron scattering.

    abstract::Direct demonstration of the reversible dissociation of native dimeric methionyl-tRNA synthetase from E. coli has been obtained using small angle neutron scattering and deuterated enzyme. Structural parameters of the fully deuterated dimer are very similar to the hydrogenated one. Analysis of the variations of the inte...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/s0300-9084(85)80205-4

    authors: Dessen P,Zaccai G,Blanquet S

    更新日期:1985-06-01 00:00:00

  • Phospholipases A2 in ocular homeostasis and diseases.

    abstract::Phospholipases A(2) (PLA(2)s) and its generation of second messengers play an important role in signal transduction, cell proliferation, cell survival and gene expression. At low concentrations mediators of PLA(2) activity have a variety of physiological effects whereas high levels of PLA(2) and its metabolites are ge...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/j.biochi.2010.04.007

    authors: Wang J,Kolko M

    更新日期:2010-06-01 00:00:00

  • Hormone-mediated inositol lipid breakdown in hepatocytes and WRK1 cells: relationship to receptor function.

    abstract::All hormones and neurotransmitters which provoke their intracellular effects by increasing the cytosolic concentration of Ca2+ in their target cells also stimulate the breakdown of inositol phospholipids. Much evidence suggests that this breakdown is intimately involved in the mechanism which couples cell-surface rece...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/s0300-9084(85)80115-2

    authors: Kirk CJ,Guillon G,Balestre MN,Creba JA,Michell RH,Jard S

    更新日期:1985-10-01 00:00:00

  • Intracellular phospholipase activity in rat heart: comparison between endogenous and exogenous substrates.

    abstract::Two methods were used to estimate the intracellular phospholipase activity in rat heart: one using exogenous radioactive substrate dispersed as unilamellar vesicles; the other using endogenous membrane hydrolysis and subsequent phospholipid and lysophospholipid separation by high-performance liquid chromatography and ...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/0300-9084(87)90049-6

    authors: Termine E,Léonardi J,Lafont H,Nalbone G

    更新日期:1987-03-01 00:00:00

  • Diacylglycerol kinase δ controls down-regulation of cyclin D1 for C2C12 myogenic differentiation.

    abstract::Diacylglycerol kinase (DGK) is a lipid-metabolizing enzyme that phosphorylates diacylglycerol (DG) to produce phosphatidic acid (PA). DGKδ is highly expressed in the skeletal muscle, and a decrease in DGKδ expression increases the severity of type 2 diabetes. However, the role of DGKδ in myogenic differentiation is st...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2018.05.017

    authors: Sakai H,Murakami C,Matsumoto KI,Urano T,Sakane F

    更新日期:2018-08-01 00:00:00

  • Brown and brite adipocytes: Same function, but different origin and response.

    abstract::Inducing brown adipocytes in white adipose tissues is a promising target to combat obesity and its related disorders in human beings. This goal has been especially encouraged by new important discoveries of human brown adipose tissues. The accumulating evidence confirms the presence of active brown adipocytes, not onl...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/j.biochi.2017.04.017

    authors: Chu DT,Gawronska-Kozak B

    更新日期:2017-07-01 00:00:00

  • The effect of gallium nitrate on synoviocyte MMP activity.

    abstract::Gallium, a group IIIa metal salt, has been demonstrated to be an effective immunosuppressive agent. Gallium has also been shown to inhibit the production of inflammatory cytokines, such as IL-1beta, produced by macrophage-like cells in vitro. To further characterize the effects of gallium on the inflammatory process, ...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/s0300-9084(00)00384-9

    authors: Panagakos FS,Kumar E,Venescar C,Guidon P

    更新日期:2000-02-01 00:00:00

  • Roles of recA mutant allele (recA495) in frameshift mutagenesis.

    abstract::The chemical carcinogen N-acetoxy-N-2-acetylaminofluorene (N-AcO-AAF) induces frameshift mutations located within two types of specific sequences (mutation hot spots): i) contiguous guanine sequences and ii) alternating GC sequences. The genetic requirements of these frameshift events were investigated using specific ...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/0300-9084(91)90117-j

    authors: Janel-Bintz R,Maenhaut-Michel G,Takahashi M,Fuchs RP

    更新日期:1991-04-01 00:00:00

  • Deimination of glycogen phosphorylase b by peptidylarginine deiminase. Influence on the kinetical characteristics and dimer-tetramer transition.

    abstract::The kinetics of the native glycogen phosphorylase b from rabbit skeletal muscle and of the enzyme specifically deiminated by peptidylarginine deiminase have been studied. One arginine residue per phosphorylase b monomer is transformed into citrulline after 3 h of incubation with peptidylarginine deiminase. The maximal...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/0300-9084(96)82188-2

    authors: Eronina TB,Livanova NB,Chebotareva NA,Kurganov BI,Luo S,Graves DJ

    更新日期:1996-01-01 00:00:00

  • pH dependent Ni(II) binding and aggregation of Escherichia coli and Helicobacter pylori NikR.

    abstract::NikR proteins are bacterial metallo-regulatory transcription factors that control the expression of the nickel uptake system and/or nickel containing enzymes such as urease, and are involved in the acid stress response. Here, a comparative study is reported on NikR from Helicobacter pylori (HpNikR) and Escherichia col...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2006.07.016

    authors: Fauquant C,Diederix RE,Rodrigue A,Dian C,Kapp U,Terradot L,Mandrand-Berthelot MA,Michaud-Soret I

    更新日期:2006-11-01 00:00:00

  • Rat kidney acylase I: further characterisation and mutation studies on the involvement of Glu 147 in the catalytic process.

    abstract::Rat kidney acylase I was characterised by performing site-directed mutagenesis and enzymatic analysis in the presence of various chemical inhibitors. Site-directed mutagenesis on E147 and overexpression of the protein in a bacterial system, revealed the importance of this residue in enzymatic activity, it corresponds ...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2003.09.002

    authors: Durand A,Giardina T,Villard C,Roussel A,Puigserver A,Perrier J

    更新日期:2003-10-01 00:00:00

  • An empirical energy function for structural assessment of protein transmembrane domains.

    abstract::Knowing the structure of a protein is essential to characterize its function and mechanism at the molecular level. Despite major advances in solving structures experimentally, most membrane protein native conformations remain unknown. This lack of available structures, along with the physical constraints imposed by th...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2015.05.018

    authors: Postic G,Ghouzam Y,Gelly JC

    更新日期:2015-08-01 00:00:00

  • Aptamers in Bordeaux 2017: An exceptional "millésime".

    abstract::About 150 participants attended the symposium organised at the Palais de la Bourse in Bordeaux, France on September 22-23, 2017. Thirty speakers from all over the world delivered lectures covering selection processes, aptamer chemistry and innovative applications of these powerful tools that display major advantages o...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2017.11.015

    authors: Toulmé JJ,Azéma L,Darfeuille F,Dausse E,Durand G,Paurelle O

    更新日期:2018-02-01 00:00:00

  • Characterization of genetic interactions with RFA1: the role of RPA in DNA replication and telomere maintenance.

    abstract::Replication protein A (RPA) is a heterotrimeric single-stranded DNA binding protein whose role in DNA replication, recombination and repair has been mainly elucidated through in vitro biochemical studies utilizing the mammalian complex. However, the identification of homologs of all three subunits in Saccharomyces cer...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/s0300-9084(00)00183-8

    authors: Smith J,Zou H,Rothstein R

    更新日期:2000-01-01 00:00:00

  • [Influence of glyoxylic acid on properties of isolated mitochondria].

    abstract::Glyoxalate is an effector of oxidative phosphorylation in isolated mitochondria : it slows down State 3 but does not affect State 4 respiration. This report presents the findings of our study on the mechanism of action of glyoxalate ; these findings are listed below. The inhibition of Stage 3 respiration by glyoxalate...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/s0300-9084(75)80145-3

    authors: Lucas M,Pons AM

    更新日期:1975-01-01 00:00:00

  • [Inducible cephalosporinases from Proteus morganii].

    abstract::It has been shown that two Proteus morganii strains produce an inducible cephalosporinase. No significative difference was shown between them: they present the same isoelectric poit: 8,3 and very similar kinetic constants. The parameter tau, proportional to the half life of antibiotic at low concentration, in presence...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/s0300-9084(76)80086-7

    authors: Labia R,Guionie M,Fabre C

    更新日期:1976-11-13 00:00:00

  • PPAR agonists, - Could tissue targeting pave the way?

    abstract::Over the last couple of decades, the PPAR family of transcription factors has received much attention from the pharmaceutical industry due to their profound ability to improve glucose and lipid metabolism upon agonist activation. However, more recently the interest in these nuclear receptors has faded because several ...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/j.biochi.2016.10.017

    authors: Bugge A,Holst D

    更新日期:2017-05-01 00:00:00

  • Efficient adenoviral transduction of 3T3-F442A preadipocytes without affecting adipocyte differentiation.

    abstract::The preadipocyte cell lines 3T3-L1 and 3T3-F442A are widely used to study the cellular mechanisms of preadipocyte differentiation and mature adipocyte functions. However, transfection with naked DNA is inefficient in these cell lines. Adenoviral gene transfer is a powerful technique to induce high levels of transgene ...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2005.05.010

    authors: Béréziat V,Moritz S,Klonjkowski B,Decaudain A,Auclair M,Eloit M,Capeau J,Vigouroux C

    更新日期:2005-11-01 00:00:00

  • Protective cellular immunity against P. falciparum malaria merozoites is associated with a different P7 and P8 residue orientation in the MHC-peptide-TCR complex.

    abstract::Developing a logical and rational methodology for obtaining vaccines, especially against the main parasite causing human malaria (P. falciparum), consists of blocking receptor-ligand interactions. Conserved peptides derived from proteins involved in invasion and having high red blood cell binding ability have thus bee...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2005.07.006

    authors: Patarroyo ME,Salazar LM,Cifuentes G,Lozano JM,Delgado G,Rivera Z,Rosas J,Vargas LE

    更新日期:2006-02-01 00:00:00

  • [Energy-dependent translocation of amino-phospholipids in the erythrocyte membrane].

    abstract::In this review, we show how the stability of the asymmetric transverse distribution of phospholipids and the physiological role of the asymmetric distribution can be explained. Experiments with paramagnetic or fluorescent lipids enabled us to show that in fresh red blood cells, i.e. containing ATP, and in resealed gho...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/s0300-9084(86)80005-0

    authors: Devaux PF,Zachowski A,Favre E,Fellmann P,Cribier S,Geldwerth D,Hervé P,Seigneuret M

    更新日期:1986-03-01 00:00:00

  • Conformational change at the active center of serine-proteases upon their binding to alpha 2-macroglobulin.

    abstract::The inhibition rates and spectral characteristics of 2 probes specific for the active-site serine residue of proteases were examined for evidence of conformational change of the proteases upon their binding to alpha 2-macroglobulin (alpha 2M). Elastase, chymotrypsin, trypsin, and plasmin were reacted with (7-nitrobenz...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/0300-9084(89)90004-7

    authors: Martini JL,Pochon F

    更新日期:1989-03-01 00:00:00

  • A-to-I editing challenger or ally to the microRNA process.

    abstract::Adenosine to inosine (A-to-I) modification by the ADAR (adenosine deaminase that acts on RNA) enzymes perform the most common type of RNA editing in metazoans. ADARs use double stranded RNA as substrates but allow interruptions of bulges and loops in the structure. It is well known that these enzymes can use messenger...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/j.biochi.2007.06.002

    authors: Ohman M

    更新日期:2007-10-01 00:00:00

  • Low enantioselectivities of human deoxycytidine kinase and human deoxyguanosine kinase with respect to 2'-deoxyadenosine, 2'-deoxyguanosine and their analogs.

    abstract::The antiviral activity of L-nucleoside analogs depends in part on the enantioselectivity of nucleoside kinases which catalyse their monophosphorylation. The substrate properties of human recombinant deoxycytidine kinase (dCK) and human recombinant deoxyguanosine kinase (dGK) with respect to L-adenosine and L-guanosine...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/s0300-9084(99)00331-4

    authors: Gaubert G,Gosselin G,Boudou V,Imbach JL,Eriksson S,Maury G

    更新日期:1999-11-01 00:00:00

  • Effect of dietary polyunsaturated fatty acids on the expression of peroxisomal ABC transporters.

    abstract::Peroxisomal ABC transporters encoded by the ABCD genes are thought to participate in the import of specific fatty acids in the peroxisomal matrix. ABCD1 deficiency is associated with X-linked adrenoleukodystrophy (X-ALD), the most frequent peroxisomal disorder which is characterized by the accumulation of saturated ve...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2008.05.022

    authors: Leclercq S,Skrzypski J,Courvoisier A,Gondcaille C,Bonnetain F,André A,Chardigny JM,Bellenger S,Bellenger J,Narce M,Savary S

    更新日期:2008-10-01 00:00:00