D- and L-lactate dehydrogenases during invertebrate evolution.

Abstract:

BACKGROUND:The L-lactate and D-lactate dehydrogenases, which are involved in the reduction of pyruvate to L(-)-lactate and D(+)-lactate, belong to evolutionarily unrelated enzyme families. The genes encoding L-LDH have been used as a model for gene duplication due to the multiple paralogs found in eubacteria, archaebacteria, and eukaryotes. Phylogenetic studies have suggested that several gene duplication events led to the main isozymes of this gene family in chordates, but little is known about the evolution of L-Ldh in invertebrates. While most invertebrates preferentially oxidize L-lactic acid, several species of mollusks, a few arthropods and polychaetes were found to have exclusively D-LDH enzymatic activity. Therefore, it has been suggested that L-LDH and D-LDH are mutually exclusive. However, recent characterization of putative mammalian D-LDH with significant similarity to yeast proteins showing D-LDH activity suggests that at least mammals have the two naturally occurring forms of LDH specific to L- and D-lactate. This study describes the phylogenetic relationships of invertebrate L-LDH and D-LDH with special emphasis on crustaceans, and discusses gene duplication events during the evolution of L-Ldh. RESULTS:Our phylogenetic analyses of L-LDH in vertebrates are consistent with the general view that the main isozymes (LDH-A, LDH-B and LDH-C) evolved through a series of gene duplications after the vertebrates diverged from tunicates. We report several gene duplication events in the crustacean, Daphnia pulex, and the leech, Helobdella robusta. Several amino acid sequences with strong similarity to putative mammalian D-LDH and to yeast DLD1 with D-LDH activity were found in both vertebrates and invertebrates. CONCLUSION:The presence of both L-Ldh and D-Ldh genes in several chordates and invertebrates suggests that the two enzymatic forms are not necessarily mutually exclusive. Although, the evolution of L-Ldh has been punctuated by multiple events of gene duplication in both vertebrates and invertebrates, a shared evolutionary history of this gene in the two groups is apparent. Moreover, the high degree of sequence similarity among D-LDH amino acid sequences suggests that they share a common evolutionary history.

journal_name

BMC Evol Biol

journal_title

BMC evolutionary biology

authors

Cristescu ME,Innes DJ,Stillman JH,Crease TJ

doi

10.1186/1471-2148-8-268

subject

Has Abstract

pub_date

2008-10-01 00:00:00

pages

268

issn

1471-2148

pii

1471-2148-8-268

journal_volume

8

pub_type

杂志文章
  • Integrating coalescent species delimitation with analysis of host specificity reveals extensive cryptic diversity despite minimal mitochondrial divergence in the malaria parasite genus Leucocytozoon.

    abstract:BACKGROUND:Coalescent methods that use multi-locus sequence data are powerful tools for identifying putatively reproductively isolated lineages, though this approach has rarely been used for the study of microbial groups that are likely to harbor many unrecognized species. Among microbial symbionts, integrating genetic...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-018-1242-x

    authors: Galen SC,Nunes R,Sweet PR,Perkins SL

    更新日期:2018-08-30 00:00:00

  • Tooth and scale morphogenesis in shark: an alternative process to the mammalian enamel knot system.

    abstract:BACKGROUND:The gene regulatory network involved in tooth morphogenesis has been extremely well described in mammals and its modeling has allowed predictions of variations in regulatory pathway that may have led to evolution of tooth shapes. However, very little is known outside of mammals to understand how this regulat...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-015-0557-0

    authors: Debiais-Thibaud M,Chiori R,Enault S,Oulion S,Germon I,Martinand-Mari C,Casane D,Borday-Birraux V

    更新日期:2015-12-24 00:00:00

  • Parallel loss of introns in the ABCB1 gene in angiosperms.

    abstract:BACKGROUND:The presence of non-coding introns is a characteristic feature of most eukaryotic genes. While the size of the introns, number of introns per gene and the number of intron-containing genes can vary greatly between sequenced eukaryotic genomes, the structure of a gene with reference to intron presence and pos...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-017-1077-x

    authors: Parvathaneni RK,DeLeo VL,Spiekerman JJ,Chakraborty D,Devos KM

    更新日期:2017-12-04 00:00:00

  • Mitochondrial genome evolution in fire ants (Hymenoptera: Formicidae).

    abstract:BACKGROUND:Complete mitochondrial genome sequences have become important tools for the study of genome architecture, phylogeny, and molecular evolution. Despite the rapid increase in available mitogenomes, the taxonomic sampling often poorly reflects phylogenetic diversity and is often also biased to represent deeper (...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-10-300

    authors: Gotzek D,Clarke J,Shoemaker D

    更新日期:2010-10-07 00:00:00

  • Barcoding success as a function of phylogenetic relatedness in Viburnum, a clade of woody angiosperms.

    abstract:BACKGROUND:The chloroplast genes matK and rbcL have been proposed as a "core" DNA barcode for identifying plant species. Published estimates of successful species identification using these loci (70-80%) may be inflated because they may have involved comparisons among distantly related species within target genera. To ...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-12-73

    authors: Clement WL,Donoghue MJ

    更新日期:2012-05-30 00:00:00

  • Chromosome painting in three-toed sloths: a cytogenetic signature and ancestral karyotype for Xenarthra.

    abstract:BACKGROUND:Xenarthra (sloths, armadillos and anteaters) represent one of four currently recognized Eutherian mammal supraorders. Some phylogenomic studies point to the possibility of Xenarthra being at the base of the Eutherian tree, together or not with the supraorder Afrotheria. We performed painting with human autos...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-12-36

    authors: Azevedo NF,Svartman M,Manchester A,de Moraes-Barros N,Stanyon R,Vianna-Morgante AM

    更新日期:2012-03-19 00:00:00

  • The power of phylogenetic approaches to detect horizontally transferred genes.

    abstract:BACKGROUND:Horizontal gene transfer plays an important role in evolution because it sometimes allows recipient lineages to adapt to new ecological niches. High genes transfer frequencies were inferred for prokaryotic and early eukaryotic evolution. Does horizontal gene transfer also impact phylogenetic reconstruction o...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-7-45

    authors: Poptsova MS,Gogarten JP

    更新日期:2007-03-21 00:00:00

  • Multiple genetic lineages challenge the monospecific status of the West African endemic frog family Odontobatrachidae.

    abstract:BACKGROUND:Correct species identification is crucial in different fields of biology, and in conservation. The endemic West African frog family Odontobatrachidae currently contains a single described species, Odontobatrachus natator. From western Guinea to western Côte d'Ivoire it inhabits forests around waterfalls or c...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-015-0346-9

    authors: Barej MF,Penner J,Schmitz A,Rödel MO

    更新日期:2015-04-19 00:00:00

  • Evolutionary dynamics of protein domain architecture in plants.

    abstract:BACKGROUND:Protein domains are the structural, functional and evolutionary units of the protein. Protein domain architectures are the linear arrangements of domain(s) in individual proteins. Although the evolutionary history of protein domain architecture has been extensively studied in microorganisms, the evolutionary...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-12-6

    authors: Zhang XC,Wang Z,Zhang X,Le MH,Sun J,Xu D,Cheng J,Stacey G

    更新日期:2012-01-17 00:00:00

  • Prey preference follows phylogeny: evolutionary dietary patterns within the marine gastropod group Cladobranchia (Gastropoda: Heterobranchia: Nudibranchia).

    abstract:BACKGROUND:The impact of predator-prey interactions on the evolution of many marine invertebrates is poorly understood. Since barriers to genetic exchange are less obvious in the marine realm than in terrestrial or freshwater systems, non-allopatric divergence may play a fundamental role in the generation of biodiversi...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-017-1066-0

    authors: Goodheart JA,Bazinet AL,Valdés Á,Collins AG,Cummings MP

    更新日期:2017-10-26 00:00:00

  • Extreme primary and secondary protein structure variability in the chimeric male-transmitted cytochrome c oxidase subunit II protein in freshwater mussels: evidence for an elevated amino acid substitution rate in the face of domain-specific purifying sele

    abstract:BACKGROUND:Freshwater unionoidean bivalves, and species representing two marine bivalve orders (Mytiloida and Veneroida), exhibit a mode of mtDNA inheritance involving distinct maternal (F) and paternal (M) transmission routes concomitant with highly divergent gender-associated mtDNA genomes. Additionally, male unionoi...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-8-165

    authors: Chapman EG,Piontkivska H,Walker JM,Stewart DT,Curole JP,Hoeh WR

    更新日期:2008-05-31 00:00:00

  • Reassortment patterns of avian influenza virus internal segments among different subtypes.

    abstract:BACKGROUND:The segmented RNA genome of avian Influenza viruses (AIV) allows genetic reassortment between co-infecting viruses, providing an evolutionary pathway to generate genetic innovation. The genetic diversity (16 haemagglutinin and 9 neuraminidase subtypes) of AIV indicates an extensive reservoir of influenza vir...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-14-16

    authors: Lu L,Lycett SJ,Leigh Brown AJ

    更新日期:2014-01-24 00:00:00

  • The first identification of complete Eph-ephrin signalling in ctenophores and sponges reveals a role for neofunctionalization in the emergence of signalling domains.

    abstract:BACKGROUND:Animals have a greater diversity of signalling pathways than their unicellular relatives, consistent with the evolution and expansion of these pathways occurring in parallel with the origin of animal multicellularity. However, the genomes of sponges and ctenophores - non-bilaterian basal animals - typically ...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-019-1418-z

    authors: Krishnan A,Degnan BM,Degnan SM

    更新日期:2019-04-25 00:00:00

  • Female responses to experimental removal of sexual selection components in Drosophila melanogaster.

    abstract:BACKGROUND:Despite the common assumption that multiple mating should in general be favored in males, but not in females, to date there is no consensus on the general impact of multiple mating on female fitness. Notably, very little is known about the genetic and physiological features underlying the female response to ...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-014-0239-3

    authors: Innocenti P,Flis I,Morrow EH

    更新日期:2014-11-19 00:00:00

  • What defines an adaptive radiation? Macroevolutionary diversification dynamics of an exceptionally species-rich continental lizard radiation.

    abstract:BACKGROUND:Adaptive radiation theory posits that ecological opportunity promotes rapid proliferation of phylogenetic and ecological diversity. Given that adaptive radiation proceeds via occupation of available niche space in newly accessed ecological zones, theory predicts that: (i) evolutionary diversification follows...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-015-0435-9

    authors: Pincheira-Donoso D,Harvey LP,Ruta M

    更新日期:2015-08-07 00:00:00

  • Heterotachy and long-branch attraction in phylogenetics.

    abstract:BACKGROUND:Probabilistic methods have progressively supplanted the Maximum Parsimony (MP) method for inferring phylogenetic trees. One of the major reasons for this shift was that MP is much more sensitive to the Long Branch Attraction (LBA) artefact than is Maximum Likelihood (ML). However, recent work by Kolaczkowski...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-5-50

    authors: Philippe H,Zhou Y,Brinkmann H,Rodrigue N,Delsuc F

    更新日期:2005-10-06 00:00:00

  • The evolution of the coding exome of the Arabidopsis species--the influences of DNA methylation, relative exon position, and exon length.

    abstract:BACKGROUND:The evolution of the coding exome is a major driving force of functional divergence both between species and between protein isoforms. Exons at different positions in the transcript or in different transcript isoforms may (1) mutate at different rates due to variations in DNA methylation level; and (2) serve...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-14-145

    authors: Chen FC,Chuang TJ,Lin HY,Hsu MK

    更新日期:2014-06-25 00:00:00

  • Accelerated evolutionary rates in tropical and oceanic parmelioid lichens (Ascomycota).

    abstract:BACKGROUND:The rate of nucleotide substitutions is not constant across the Tree of Life, and departures from a molecular clock have been commonly reported. Within parmelioid lichens, the largest group of macrolichens, large discrepancies in branch lengths between clades were found in previous studies. Using an extended...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-8-257

    authors: Lumbsch HT,Hipp AL,Divakar PK,Blanco O,Crespo A

    更新日期:2008-09-22 00:00:00

  • Differential expression of three galaxin-related genes during settlement and metamorphosis in the scleractinian coral Acropora millepora.

    abstract:BACKGROUND:The coral skeleton consists of CaCO3 deposited upon an organic matrix primarily as aragonite. Currently galaxin, from Galaxea fascicularis, is the only soluble protein component of the organic matrix that has been characterized from a coral. Three genes related to galaxin were identified in the coral Acropor...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-9-178

    authors: Reyes-Bermudez A,Lin Z,Hayward DC,Miller DJ,Ball EE

    更新日期:2009-07-29 00:00:00

  • Diversity and specificity in the interaction between Caenorhabditis elegans and the pathogen Serratia marcescens.

    abstract:BACKGROUND:Co-evolutionary arms races between parasites and hosts are considered to be of immense importance in the evolution of living organisms, potentially leading to highly dynamic life-history changes. The outcome of such arms races is in many cases thought to be determined by frequency dependent selection, which ...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-4-49

    authors: Schulenburg H,Ewbank JJ

    更新日期:2004-11-22 00:00:00

  • Divergence with gene flow across a speciation continuum of Heliconius butterflies.

    abstract:BACKGROUND:A key to understanding the origins of species is determining the evolutionary processes that drive the patterns of genomic divergence during speciation. New genomic technologies enable the study of high-resolution genomic patterns of divergence across natural speciation continua, where taxa pairs with differ...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-015-0486-y

    authors: Supple MA,Papa R,Hines HM,McMillan WO,Counterman BA

    更新日期:2015-09-24 00:00:00

  • Fluorescent sperm in a transparent worm: validation of a GFP marker to study sexual selection.

    abstract:BACKGROUND:Sexual selection has initially been thought to occur exclusively at the precopulatory stage in terms of contests among males and female mate choice, but research over the last four decades revealed that it often continues after copulation through sperm competition and cryptic female choice. However, studying...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-14-148

    authors: Marie-Orleach L,Janicke T,Vizoso DB,Eichmann M,Schärer L

    更新日期:2014-06-30 00:00:00

  • The evolution of ependymin-related proteins.

    abstract:BACKGROUND:Ependymins were originally defined as fish-specific secreted glycoproteins involved in central nervous system plasticity and memory formation. Subsequent research revealed that these proteins represent a fish-specific lineage of a larger ependymin-related protein family (EPDRs). EPDRs have now been identifie...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-018-1306-y

    authors: McDougall C,Hammond MJ,Dailey SC,Somorjai IML,Cummins SF,Degnan BM

    更新日期:2018-12-04 00:00:00

  • Diversification of CYCLOIDEA-like genes in Dipsacaceae (Dipsacales): implications for the evolution of capitulum inflorescences.

    abstract:BACKGROUND:CYCLOIDEA (CYC)-like genes have been implicated in the development of capitulum inflorescences (i.e. flowering heads) in Asteraceae, where many small flowers (florets) are packed tightly into an inflorescence that resembles a single flower. Several rounds of duplication of CYC-like genes have occurred in Ast...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-11-325

    authors: Carlson SE,Howarth DG,Donoghue MJ

    更新日期:2011-11-06 00:00:00

  • Assessing what is needed to resolve a molecular phylogeny: simulations and empirical data from emydid turtles.

    abstract:BACKGROUND:Phylogenies often contain both well-supported and poorly supported nodes. Determining how much additional data might be required to eventually recover most or all nodes with high support is an important pragmatic goal, and simulations have been used to examine this question. Most simulations have been based ...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-9-56

    authors: Spinks PQ,Thomson RC,Lovely GA,Shaffer HB

    更新日期:2009-03-12 00:00:00

  • Reduced alphabet of prebiotic amino acids optimally encodes the conformational space of diverse extant protein folds.

    abstract:BACKGROUND:There is wide agreement that only a subset of the twenty standard amino acids existed prebiotically in sufficient concentrations to form functional polypeptides. We ask how this subset, postulated as {A,D,E,G,I,L,P,S,T,V}, could have formed structures stable enough to found metabolic pathways. Inspired by al...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-019-1464-6

    authors: Solis AD

    更新日期:2019-07-30 00:00:00

  • Population structure and plumage polymorphism: The intraspecific evolutionary relationships of a polymorphic raptor, Buteo jamaicensis harlani.

    abstract:BACKGROUND:Phenotypic and molecular genetic data often provide conflicting patterns of intraspecific relationships confounding phylogenetic inference, particularly among birds where a variety of environmental factors may influence plumage characters. Among diurnal raptors, the taxonomic relationship of Buteo jamaicensi...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-10-224

    authors: Hull JM,Mindell DP,Talbot SL,Kay EH,Hoekstra HE,Ernest HB

    更新日期:2010-07-22 00:00:00

  • Genetic tests of ancient asexuality in root knot nematodes reveal recent hybrid origins.

    abstract:BACKGROUND:The existence of "ancient asexuals", taxa that have persisted for long periods of evolutionary history without sexual recombination, is both controversial and important for our understanding of the evolution and maintenance of sexual reproduction. A lack of sex has consequences not only for the ecology of th...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-8-194

    authors: Lunt DH

    更新日期:2008-07-07 00:00:00

  • A glimpse on the pattern of rodent diversification: a phylogenetic approach.

    abstract:BACKGROUND:Development of phylogenetic methods that do not rely on fossils for the study of evolutionary processes through time have revolutionized the field of evolutionary biology and resulted in an unprecedented expansion of our knowledge about the tree of life. These methods have helped to shed light on the macroev...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-12-88

    authors: Fabre PH,Hautier L,Dimitrov D,Douzery EJ

    更新日期:2012-06-14 00:00:00

  • Influence of ancient glacial periods on the Andean fauna: the case of the pampas cat (Leopardus colocolo).

    abstract:BACKGROUND:While numerous studies revealed the major role of environmental changes of the Quaternary on the evolution of biodiversity, research on the influence of that period on current South-American fauna is scarce and have usually focused on lowland regions. In this study, the genetic structure of the pampas cat (L...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-9-68

    authors: Cossíos D,Lucherini M,Ruiz-García M,Angers B

    更新日期:2009-03-30 00:00:00