Spatio-temporal correlations and visual signalling in a complete neuronal population.

Abstract:

:Statistical dependencies in the responses of sensory neurons govern both the amount of stimulus information conveyed and the means by which downstream neurons can extract it. Although a variety of measurements indicate the existence of such dependencies, their origin and importance for neural coding are poorly understood. Here we analyse the functional significance of correlated firing in a complete population of macaque parasol retinal ganglion cells using a model of multi-neuron spike responses. The model, with parameters fit directly to physiological data, simultaneously captures both the stimulus dependence and detailed spatio-temporal correlations in population responses, and provides two insights into the structure of the neural code. First, neural encoding at the population level is less noisy than one would expect from the variability of individual neurons: spike times are more precise, and can be predicted more accurately when the spiking of neighbouring neurons is taken into account. Second, correlations provide additional sensory information: optimal, model-based decoding that exploits the response correlation structure extracts 20% more information about the visual scene than decoding under the assumption of independence, and preserves 40% more visual information than optimal linear decoding. This model-based approach reveals the role of correlated activity in the retinal coding of visual stimuli, and provides a general framework for understanding the importance of correlated activity in populations of neurons.

journal_name

Nature

journal_title

Nature

authors

Pillow JW,Shlens J,Paninski L,Sher A,Litke AM,Chichilnisky EJ,Simoncelli EP

doi

10.1038/nature07140

subject

Has Abstract

pub_date

2008-08-21 00:00:00

pages

995-9

issue

7207

eissn

0028-0836

issn

1476-4687

pii

nature07140

journal_volume

454

pub_type

杂志文章

相关文献

NATURE文献大全
  • A molecular timescale for vertebrate evolution.

    abstract::A timescale is necessary for estimating rates of molecular and morphological change in organisms and for interpreting patterns of macroevolution and biogeography. Traditionally, these times have been obtained from the fossil record, where the earliest representatives of two lineages establish a minimum time of diverge...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/31927

    authors: Kumar S,Hedges SB

    更新日期:1998-04-30 00:00:00

  • The global distribution and trajectory of tidal flats.

    abstract::Increasing human populations around the global coastline have caused extensive loss, degradation and fragmentation of coastal ecosystems, threatening the delivery of important ecosystem services1. As a result, alarming losses of mangrove, coral reef, seagrass, kelp forest and coastal marsh ecosystems have occurred1-6....

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/s41586-018-0805-8

    authors: Murray NJ,Phinn SR,DeWitt M,Ferrari R,Johnston R,Lyons MB,Clinton N,Thau D,Fuller RA

    更新日期:2019-01-01 00:00:00

  • An endocannabinoid mechanism for stress-induced analgesia.

    abstract::Acute stress suppresses pain by activating brain pathways that engage opioid or non-opioid mechanisms. Here we show that an opioid-independent form of this phenomenon, termed stress-induced analgesia, is mediated by the release of endogenous marijuana-like (cannabinoid) compounds in the brain. Blockade of cannabinoid ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature03658

    authors: Hohmann AG,Suplita RL,Bolton NM,Neely MH,Fegley D,Mangieri R,Krey JF,Walker JM,Holmes PV,Crystal JD,Duranti A,Tontini A,Mor M,Tarzia G,Piomelli D

    更新日期:2005-06-23 00:00:00

  • Host-microbiota maladaptation in colorectal cancer.

    abstract::Colorectal cancer (CRC) is a heterogeneous disease of the intestinal epithelium that is characterized by the accumulation of mutations and a dysregulated immune response. Up to 90% of disease risk is thought to be due to environmental factors such as diet, which is consistent with a growing body of literature that des...

    journal_title:Nature

    pub_type: 杂志文章,评审

    doi:10.1038/s41586-020-2729-3

    authors: Janney A,Powrie F,Mann EH

    更新日期:2020-09-01 00:00:00

  • FeO2 and FeOOH under deep lower-mantle conditions and Earth's oxygen-hydrogen cycles.

    abstract::The distribution, accumulation and circulation of oxygen and hydrogen in Earth's interior dictate the geochemical evolution of the hydrosphere, atmosphere and biosphere. The oxygen-rich atmosphere and iron-rich core represent two end-members of the oxygen-iron (O-Fe) system, overlapping with the entire pressure-temper...

    journal_title:Nature

    pub_type: 历史文章,杂志文章

    doi:10.1038/nature18018

    authors: Hu Q,Kim DY,Yang W,Yang L,Meng Y,Zhang L,Mao HK

    更新日期:2016-06-09 00:00:00

  • Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence.

    abstract::Countless millions of people have died from tuberculosis, a chronic infectious disease caused by the tubercle bacillus. The complete genome sequence of the best-characterized strain of Mycobacterium tuberculosis, H37Rv, has been determined and analysed in order to improve our understanding of the biology of this slow-...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/31159

    authors: Cole ST,Brosch R,Parkhill J,Garnier T,Churcher C,Harris D,Gordon SV,Eiglmeier K,Gas S,Barry CE 3rd,Tekaia F,Badcock K,Basham D,Brown D,Chillingworth T,Connor R,Davies R,Devlin K,Feltwell T,Gentles S,Hamlin N,Hol

    更新日期:1998-06-11 00:00:00

  • Sensory-evoked LTP driven by dendritic plateau potentials in vivo.

    abstract::Long-term synaptic potentiation (LTP) is thought to be a key process in cortical synaptic network plasticity and memory formation. Hebbian forms of LTP depend on strong postsynaptic depolarization, which in many models is generated by action potentials that propagate back from the soma into dendrites. However, local d...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature13664

    authors: Gambino F,Pagès S,Kehayas V,Baptista D,Tatti R,Carleton A,Holtmaat A

    更新日期:2014-11-06 00:00:00

  • The abundances of constituents of Titan's atmosphere from the GCMS instrument on the Huygens probe.

    abstract::Saturn's largest moon, Titan, remains an enigma, explored only by remote sensing from Earth, and by the Voyager and Cassini spacecraft. The most puzzling aspects include the origin of the molecular nitrogen and methane in its atmosphere, and the mechanism(s) by which methane is maintained in the face of rapid destruct...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature04122

    authors: Niemann HB,Atreya SK,Bauer SJ,Carignan GR,Demick JE,Frost RL,Gautier D,Haberman JA,Harpold DN,Hunten DM,Israel G,Lunine JI,Kasprzak WT,Owen TC,Paulkovich M,Raulin F,Raaen E,Way SH

    更新日期:2005-12-08 00:00:00

  • Warnock's law.

    abstract::Regulatory aspects of the Warnock Committee's report on reproductive technologies are summarized. A licensing authority with "substantial lay representation" would license practitioners and approve experimentation. Artificial insemination by donor would become a regulated service, and resulting children would be leg...

    journal_title:Nature

    pub_type: 新闻

    doi:10.1038/310266b0

    authors:

    更新日期:1984-07-26 00:00:00

  • FOXA1 mutations alter pioneering activity, differentiation and prostate cancer phenotypes.

    abstract::Mutations in the transcription factor FOXA1 define a unique subset of prostate cancers but the functional consequences of these mutations and whether they confer gain or loss of function is unknown1-9. Here, by annotating the landscape of FOXA1 mutations from 3,086 human prostate cancers, we define two hotspots in the...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/s41586-019-1318-9

    authors: Adams EJ,Karthaus WR,Hoover E,Liu D,Gruet A,Zhang Z,Cho H,DiLoreto R,Chhangawala S,Liu Y,Watson PA,Davicioni E,Sboner A,Barbieri CE,Bose R,Leslie CS,Sawyers CL

    更新日期:2019-07-01 00:00:00

  • A network of grassroots reserves protects tropical river fish diversity.

    abstract::Intensive fisheries have reduced fish biodiversity and abundance in aquatic ecosystems worldwide1-3. 'No-take' marine reserves have become a cornerstone of marine ecosystem-based fisheries management4-6, and their benefits for adjacent fisheries are maximized when reserve design fosters synergies among nearby reserves...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/s41586-020-2944-y

    authors: Koning AA,Perales KM,Fluet-Chouinard E,McIntyre PB

    更新日期:2020-12-01 00:00:00

  • Hsp90 as a capacitor for morphological evolution.

    abstract::The heat-shock protein Hsp90 supports diverse but specific signal transducers and lies at the interface of several developmental pathways. We report here that when Drosophila Hsp90 is mutant or pharmacologically impaired, phenotypic variation affecting nearly any adult structure is produced, with specific variants dep...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/24550

    authors: Rutherford SL,Lindquist S

    更新日期:1998-11-26 00:00:00

  • Late acquisition of mitochondria by a host with chimaeric prokaryotic ancestry.

    abstract::The origin of eukaryotes stands as a major conundrum in biology. Current evidence indicates that the last eukaryotic common ancestor already possessed many eukaryotic hallmarks, including a complex subcellular organization. In addition, the lack of evolutionary intermediates challenges the elucidation of the relative ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature16941

    authors: Pittis AA,Gabaldón T

    更新日期:2016-03-03 00:00:00

  • Interaction of c-Abl and p73alpha and their collaboration to induce apoptosis.

    abstract::c-Abl, a non-receptor tyrosine kinase, is activated by agents that damage DNA. This activation results in either arrest of the cell cycle in phase G1 or apoptotic cell death, both of which are dependent on the kinase activity of c-Abl. p73, a member of the p53 family of tumour-suppressor proteins, can also induce apop...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/21697

    authors: Agami R,Blandino G,Oren M,Shaul Y

    更新日期:1999-06-24 00:00:00

  • Cellular APOBEC3G restricts HIV-1 infection in resting CD4+ T cells.

    abstract::In contrast to activated CD4+ T cells, resting human CD4+ T cells circulating in blood are highly resistant to infection with human immunodeficiency virus (HIV). Whether the inability of HIV to infect these resting CD4+ T cells is due to the lack of a key factor, or alternatively reflects the presence of an efficient ...

    journal_title:Nature

    pub_type: 杂志文章,收录出版

    doi:10.1038/nature03493

    authors: Chiu YL,Soros VB,Kreisberg JF,Stopak K,Yonemoto W,Greene WC

    更新日期:2005-05-05 00:00:00

  • Differential repair of O(6)-methylguanine in DNA of rat hepatocytes and nonparenchymal cells.

    abstract::Chronic administration of several chemical carcinogens to laboratory animals induces a variety of tumours which arise from specific cell populations within the liver. In the rat, diethylnitrosamine induces hepatocellular carcinomas, dimethylnitrosamine induces both angiosarcomas and hepatocellular carcinomas, vinyl ch...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/288185a0

    authors: Lewis JG,Swenberg JA

    更新日期:1980-11-13 00:00:00

  • Mesozoic plate-motion history below the northeast Pacific Ocean from seismic images of the subducted Farallon slab

    abstract::The high-resolution seismic imaging of subducted oceanic slabs has become a powerful tool for reconstructing palaeogeography. The images can now be interpreted quantitatively by comparison with models of the general circulation of the Earth's mantle. Here we use a three-dimensional spherical computer model of mantle c...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/35012586

    authors: Bunge HP,Grand SP

    更新日期:2000-05-18 00:00:00

  • African vegetation controlled by tropical sea surface temperatures in the mid-Pleistocene period.

    abstract::The dominant forcing factors for past large-scale changes in vegetation are widely debated. Changes in the distribution of C4 plants--adapted to warm, dry conditions and low atmospheric CO2 concentrations--have been attributed to marked changes in environmental conditions, but the relative impacts of changes in aridit...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature01500

    authors: Schefuss E,Schouten S,Jansen JH,Sinninghe Damsté JS

    更新日期:2003-03-27 00:00:00

  • Binary orbits as the driver of γ-ray emission and mass ejection in classical novae.

    abstract::Classical novae are the most common astrophysical thermonuclear explosions, occurring on the surfaces of white dwarf stars accreting gas from companions in binary star systems. Novae typically expel about 10(-4) solar masses of material at velocities exceeding 1,000 kilometres per second. However, the mechanism of mas...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature13773

    authors: Chomiuk L,Linford JD,Yang J,O'Brien TJ,Paragi Z,Mioduszewski AJ,Beswick RJ,Cheung CC,Mukai K,Nelson T,Ribeiro VA,Rupen MP,Sokoloski JL,Weston J,Zheng Y,Bode MF,Eyres S,Roy N,Taylor GB

    更新日期:2014-10-16 00:00:00

  • A new member of the immunoglobulin superfamily--CTLA-4.

    abstract::The immunoglobulin superfamily is a group of proteins, each made of one or several domains sharing key structural features with either the variable (V) or the constant (C) immunoglobulin domains. It includes such functionally important members as the immunoglobulins themselves, major histocompatibility complex (MHC) c...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/328267a0

    authors: Brunet JF,Denizot F,Luciani MF,Roux-Dosseto M,Suzan M,Mattei MG,Golstein P

    更新日期:1987-07-16 00:00:00

  • Osmotic stress mimics effects of vasopressin on learned behaviour.

    abstract::It has been suggested that arginine vasopressin (AVP) is involved in the retention of learned responses, in addition to its classical physiological functions of water retention and modulation of blood pressure. AVP administered subcutaneously (s.c.), intraventricularly or intracerebrally can prolong extinction of acti...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/315750a0

    authors: Koob GF,Dantzer R,Rodriguez F,Bloom FE,Le Moal M

    更新日期:1985-06-27 00:00:00

  • Anaerobic microbial metabolism can proceed close to thermodynamic limits.

    abstract::Many fermentative bacteria obtain energy for growth by reactions in which the change in free energy (DeltaG') is less than that needed to synthesize ATP. These bacteria couple substrate metabolism directly to ATP synthesis, however, by classical phosphoryl transfer reactions. An explanation for the energy economy of t...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/415454a

    authors: Jackson BE,McInerney MJ

    更新日期:2002-01-24 00:00:00

  • Crystal structure of RecBCD enzyme reveals a machine for processing DNA breaks.

    abstract::RecBCD is a multi-functional enzyme complex that processes DNA ends resulting from a double-strand break. RecBCD is a bipolar helicase that splits the duplex into its component strands and digests them until encountering a recombinational hotspot (Chi site). The nuclease activity is then attenuated and RecBCD loads Re...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature02988

    authors: Singleton MR,Dillingham MS,Gaudier M,Kowalczykowski SC,Wigley DB

    更新日期:2004-11-11 00:00:00

  • Slot machine jingles encourage gamblers to raise the stakes.

    abstract:: ...

    journal_title:Nature

    pub_type: 评论,新闻

    doi:10.1038/d41586-018-07224-0

    authors:

    更新日期:2018-11-01 00:00:00

  • Centractin is an actin homologue associated with the centrosome.

    abstract::Actin is one of the most ubiquitous, abundant and well-conserved proteins of eukaryotes, participating in many crucial cellular processes including the maintenance of cell shape, motility and cell division. Actins from the most divergent sources still share amino-acid identities in excess of 70% (ref. 3). This may wel...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/359246a0

    authors: Clark SW,Meyer DI

    更新日期:1992-09-17 00:00:00

  • Tobacco smoking and somatic mutations in human bronchial epithelium.

    abstract::Tobacco smoking causes lung cancer1-3, a process that is driven by more than 60 carcinogens in cigarette smoke that directly damage and mutate DNA4,5. The profound effects of tobacco on the genome of lung cancer cells are well-documented6-10, but equivalent data for normal bronchial cells are lacking. Here we sequence...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/s41586-020-1961-1

    authors: Yoshida K,Gowers KHC,Lee-Six H,Chandrasekharan DP,Coorens T,Maughan EF,Beal K,Menzies A,Millar FR,Anderson E,Clarke SE,Pennycuick A,Thakrar RM,Butler CR,Kakiuchi N,Hirano T,Hynds RE,Stratton MR,Martincorena I,Janes

    更新日期:2020-02-01 00:00:00

  • Defensin-like polypeptide LUREs are pollen tube attractants secreted from synergid cells.

    abstract::For more than 140 years, pollen tube guidance in flowering plants has been thought to be mediated by chemoattractants derived from target ovules. However, there has been no convincing evidence of any particular molecule being the true attractant that actually controls the navigation of pollen tubes towards ovules. Eme...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature07882

    authors: Okuda S,Tsutsui H,Shiina K,Sprunck S,Takeuchi H,Yui R,Kasahara RD,Hamamura Y,Mizukami A,Susaki D,Kawano N,Sakakibara T,Namiki S,Itoh K,Otsuka K,Matsuzaki M,Nozaki H,Kuroiwa T,Nakano A,Kanaoka MM,Dresselhaus T,Sa

    更新日期:2009-03-19 00:00:00

  • Neurons that regulate mouse torpor.

    abstract::The advent of endothermy, which is achieved through the continuous homeostatic regulation of body temperature and metabolism1,2, is a defining feature of mammalian and avian evolution. However, when challenged by food deprivation or harsh environmental conditions, many mammalian species initiate adaptive energy-conser...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/s41586-020-2387-5

    authors: Hrvatin S,Sun S,Wilcox OF,Yao H,Lavin-Peter AJ,Cicconet M,Assad EG,Palmer ME,Aronson S,Banks AS,Griffith EC,Greenberg ME

    更新日期:2020-07-01 00:00:00

  • Author Correction: Observation of Bose-Einstein condensates in an Earth-orbiting research lab.

    abstract::An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...

    journal_title:Nature

    pub_type: 已发布勘误

    doi:10.1038/s41586-020-2517-0

    authors: Aveline DC,Williams JR,Elliott ER,Dutenhoffer C,Kellogg JR,Kohel JM,Lay NE,Oudrhiri K,Shotwell RF,Yu N,Thompson RJ

    更新日期:2020-08-01 00:00:00

  • A seismic reflection image for the base of a tectonic plate.

    abstract::Plate tectonics successfully describes the surface of Earth as a mosaic of moving lithospheric plates. But it is not clear what happens at the base of the plates, the lithosphere-asthenosphere boundary (LAB). The LAB has been well imaged with converted teleseismic waves, whose 10-40-kilometre wavelength controls the s...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature14146

    authors: Stern TA,Henrys SA,Okaya D,Louie JN,Savage MK,Lamb S,Sato H,Sutherland R,Iwasaki T

    更新日期:2015-02-05 00:00:00