Fine-mapping the genetic basis of CRP regulation in African Americans: a Bayesian approach.

Abstract:

:Basal levels of C-reactive protein (CRP) have been associated with disease, particularly future cardiovascular events. Twin studies estimate 50% CRP heritability, so the identification of genetic variants influencing CRP expression is important. Existing studies in populations of European ancestry have identified numerous cis-acting variants but leave significant ambiguity over the identity of the key functional polymorphisms. We addressed this issue by typing a dense map of CRP single-nucleotide polymorphisms (SNPs), and quantifying serum CRP in 594 unrelated African Americans. We used Bayesian model choice analysis to select the combination of SNPs best explaining basal CRP and found strong support for triallelic rs3091244 alone, with the T allele acting in an additive manner (Bayes factor > 100 vs. null model), with additional support for a model incorporating both rs3091244 and rs12728740. Admixture analysis suggested SNP rs12728740 segregated with haplotypes predicted to be of recent European origin. Using a cladistic approach we confirmed the importance of rs3091244(T) by demonstrating a significant partition of haplotype effect based on the rs3091244(C/T) mutation (F = 8.91, P = 0.006). We argue that weaker linkage disequilibrium across the African American CRP locus compared with Europeans has allowed us to establish an unambiguous functional role for rs3091244(T), while also recognising the potential for additional functional mutations present in the European genome.

journal_name

Hum Genet

journal_title

Human genetics

authors

Rhodes B,Morris DL,Subrahmanyan L,Aubin C,de Leon CF,Kelly JF,Evans DA,Whittaker JC,Oksenberg JR,De Jager PL,Vyse TJ

doi

10.1007/s00439-008-0517-5

subject

Has Abstract

pub_date

2008-07-01 00:00:00

pages

633-42

issue

6

eissn

0340-6717

issn

1432-1203

journal_volume

123

pub_type

杂志文章
  • DGGE screening of PKD1 gene reveals novel mutations in a large cohort of 146 unrelated patients.

    abstract::Autosomal dominant polycystic kidney disease (ADPKD) is one of the most commonly inherited renal diseases. ADPKD is a genetically heterogeneous disorder involving at least three different genes. PKD1, the major locus mapped to chromosome 16p13.3 accounts for approximately 85% of ADPKD cases. The search for mutations i...

    journal_title:Human genetics

    pub_type: 杂志文章

    doi:10.1007/s004390051094

    authors: Perrichot RA,Mercier B,Simon PM,Whebe B,Cledes J,Ferec C

    更新日期:1999-09-01 00:00:00

  • Four new nucleotide sequence polymorphisms in the LDL receptor gene detected by SSCP analysis.

    abstract::Seven nucleotide sequence polymorphisms were detected within exons of the low-density lipoprotein (LDL) receptor gene using single-strand conformation polymorphism (SSCP) analysis followed by direct sequence analysis on amplified DNA. Four nucleotide changes at nucleotide positions 1617, 1725, 2232, and 2635 were new ...

    journal_title:Human genetics

    pub_type: 杂志文章

    doi:10.1007/BF00216148

    authors: Yamakawa-Kobayashi K,Kobayashi T,Obara T,Hamaguchi H

    更新日期:1993-08-01 00:00:00

  • Facioscapulohumeral muscular dystrophy concentrated in the village Cullar, Nevşehir, Turkey.

    abstract::In this paper genetic, clinical, and epidemiological studies on a muscular dystrophy which originated and is concentrated in the village of Cullar, Nevşehir of inland Turkey, are reported. A pedigree chart has been constructed by careful and repeated inquiries, and both clinical and laboratory examinations have genera...

    journal_title:Human genetics

    pub_type: 杂志文章

    doi:10.1007/BF00273001

    authors: Sayli BS,Yaltkaya K,Cin S

    更新日期:1984-01-01 00:00:00

  • Duchenne muscular dystrophy. Frequency of sporadic cases.

    abstract::A segregation analysis on 135 Duchenne families from Venetia (Italy) suggests that the proportion of sporadic cases might be less than expected. Support for this view is also given by an analysis of a pooled sample including 284 additional sibships from comparable studies published previously. Several hypotheses were ...

    journal_title:Human genetics

    pub_type: 杂志文章

    doi:10.1007/BF00291351

    authors: Danieli GA,Barbujani G

    更新日期:1984-01-01 00:00:00

  • A new multicolor-FISH approach for the characterization of marker chromosomes: centromere-specific multicolor-FISH (cenM-FISH).

    abstract::Centromere-specific multi-color FISH (cenM-FISH) is a new multicolor FISH technique that allows the simultaneous characterization of all human centromeres by using labeled centromeric satellite DNA as probes. This approach allows the rapid identification of all human centromeres by their individual pseudo-coloring in ...

    journal_title:Human genetics

    pub_type: 杂志文章

    doi:10.1007/s004390100459

    authors: Nietzel A,Rocchi M,Starke H,Heller A,Fiedler W,Wlodarska I,Loncarevic IF,Beensen V,Claussen U,Liehr T

    更新日期:2001-03-01 00:00:00

  • Characterization of mutants of the vitamin D-binding protein/group-specific component: molecular evolution of GC*1A2 and GC*1A3, common in some Asian populations.

    abstract::A well defined polymorphism of vitamin D-binding/group-specific component (GC) residues in exon 11. To characterize the molecular basis of GC*1A2 and GC*1A3, common in some Asian populations, we analyzed all coding exons amplified by the polymerase chain reaction. GC*1F was divided into GC*1FC and GC*1FT by a C-T tran...

    journal_title:Human genetics

    pub_type: 杂志文章

    doi:10.1007/BF00223861

    authors: Yuasa I,Kofler A,Braun A,Umetsu K,Bichlmaier R,Kammerer S,Cleve H

    更新日期:1995-05-01 00:00:00

  • Molecular defects in erythropoietic protoporphyria with terminal liver failure.

    abstract::We identified two additional mutations in the ferrochelatase gene in two Swiss patients with erythropoietic protoporphyria (EPP). Ferrochelatase cDNA from patients was amplified by the polymerase chain reaction (PCR) and subjected to mutation analysis by sequencing PCR products either directly or after subcloning. The...

    journal_title:Human genetics

    pub_type: 杂志文章

    doi:10.1007/BF00201578

    authors: Schneider-Yin X,Schäfer BW,Möhr P,Burg G,Minder EI

    更新日期:1994-06-01 00:00:00

  • Neurologic and ocular phenotype in Pitt-Hopkins syndrome and a zebrafish model.

    abstract::In this study, we performed an in-depth analysis of the neurologic and ophthalmologic phenotype in a patient with Pitt-Hopkins syndrome (PTHS), a disorder characterized by severe mental and motor retardation, carrying a uniallelic TCF4 deletion, and studied a zebrafish model. The PTHS-patient was characterized by high...

    journal_title:Human genetics

    pub_type: 杂志文章

    doi:10.1007/s00439-011-0999-4

    authors: Brockschmidt A,Filippi A,Charbel Issa P,Nelles M,Urbach H,Eter N,Driever W,Weber RG

    更新日期:2011-11-01 00:00:00

  • Exome sequencing unravels unexpected differential diagnoses in individuals with the tentative diagnosis of Coffin-Siris and Nicolaides-Baraitser syndromes.

    abstract::Coffin-Siris syndrome (CSS) and Nicolaides-Baraitser syndrome (NCBRS) are rare intellectual disability/congenital malformation syndromes that represent distinct entities but show considerable clinical overlap. They are caused by mutations in genes encoding members of the BRG1- and BRM-associated factor (BAF) complex. ...

    journal_title:Human genetics

    pub_type: 临床试验,杂志文章,多中心研究

    doi:10.1007/s00439-015-1535-8

    authors: Bramswig NC,Lüdecke HJ,Alanay Y,Albrecht B,Barthelmie A,Boduroglu K,Braunholz D,Caliebe A,Chrzanowska KH,Czeschik JC,Endele S,Graf E,Guillén-Navarro E,Kiper PÖ,López-González V,Parenti I,Pozojevic J,Utine GE,Wieland T

    更新日期:2015-06-01 00:00:00

  • Mitochondrial DNA and inflammatory diseases.

    abstract::Increasing experimental evidence supports a connection between inflammation and mitochondrial dysfunction. Both acute and chronic inflammatory diseases course with elevated free radicals production that may affect mitochondrial proteins, lipids, and mtDNA. The subsequent mitochondrial impairment produces more reactive...

    journal_title:Human genetics

    pub_type: 杂志文章,评审

    doi:10.1007/s00439-011-1057-y

    authors: Escames G,López LC,García JA,García-Corzo L,Ortiz F,Acuña-Castroviejo D

    更新日期:2012-02-01 00:00:00

  • Endomitosis: a reappraisal.

    abstract::The concept and role of endomitosis is reevaluated in the light of observations on three organisms. Endomitosis which morphologically agrees with Geitler's (1939) classical definition is compared in tapetal cells of the liliaceous plant Eremurus, in the septal cells of the testicular follicles of the grasshopper Melan...

    journal_title:Human genetics

    pub_type: 杂志文章

    doi:10.1007/BF00285390

    authors: Therman E,Sarto GE,Stubblefield PA

    更新日期:1983-01-01 00:00:00

  • Direct estimation of serological H-Y antigen by flow cytometry.

    abstract::This study was undertaken to evaluate the efficiency of flow cytometry in the detection of the serological H-Y antigen, and to survey expression of H-Y in the normal human population. Peripheral blood leukocytes (granulocytes) were reacted with monoclonal H-Y antibody, gw-16, and with FITC-conjugated goat anti-mouse I...

    journal_title:Human genetics

    pub_type: 杂志文章

    doi:10.1007/BF00276339

    authors: Kent M,Wachtel S,Thaler HT

    更新日期:1990-06-01 00:00:00

  • A novel transcript of cyclin-dependent kinase-like 5 (CDKL5) has an alternative C-terminus and is the predominant transcript in brain.

    abstract::The X-linked cyclin-dependent kinase-like 5 (CDKL5) gene is an important molecular determinant of early-onset intractable seizures with infantile spasms and Rett syndrome-like phenotype. The gene encodes a kinase that may influence components of molecular pathways associated with MeCP2. In humans there are two previou...

    journal_title:Human genetics

    pub_type: 杂志文章

    doi:10.1007/s00439-011-1058-x

    authors: Williamson SL,Giudici L,Kilstrup-Nielsen C,Gold W,Pelka GJ,Tam PP,Grimm A,Prodi D,Landsberger N,Christodoulou J

    更新日期:2012-02-01 00:00:00

  • The cataract-linked RNA-binding protein Celf1 post-transcriptionally controls the spatiotemporal expression of the key homeodomain transcription factors Pax6 and Prox1 in lens development.

    abstract::The homeodomain transcription factors (TFs) Pax6 (OMIM: 607108) and Prox1 (OMIM: 601546) critically regulate gene expression in lens development. While PAX6 mutations in humans can cause cataract, aniridia, microphthalmia, and anophthalmia, among other defects, Prox1 deletion in mice causes severe lens abnormalities, ...

    journal_title:Human genetics

    pub_type: 杂志文章

    doi:10.1007/s00439-020-02195-7

    authors: Aryal S,Viet J,Weatherbee BAT,Siddam AD,Hernandez FG,Gautier-Courteille C,Paillard L,Lachke SA

    更新日期:2020-12-01 00:00:00

  • Detection of beta-thalassemia and hemoglobin E genes in Thai by a DNA amplification technique.

    abstract::Enzymatic DNA amplification and polyacrylamide gel electrophoresis, which demonstrate different sizes of DNA fragments, were used to detect the common mutations causing beta-thalassemia and hemoglobin (Hb) E in Thai people. The 4-bp deletion at codons 41 and 42 can be detected directly by polyacrylamide gel electropho...

    journal_title:Human genetics

    pub_type: 杂志文章

    doi:10.1007/BF00274004

    authors: Winichagoon P,Kownkon J,Yenchitsomanus P,Thonglairoam V,Siritanaratkul N,Fucharoen S

    更新日期:1989-07-01 00:00:00

  • Hb D Los Angeles (D-Punjab) and Hb Presbyterian: analysis of the defect at the DNA level.

    abstract::Amplification of the beta-globin gene by the polymerase chain reaction (PCR) and direct sequencing were used for a fast and reliable identification of the beta-globin variant Hb D Los Angeles and revealed the predicted G----C substitution in codon 121. The same method showed the molecular defect in Hb Presbyterian to ...

    journal_title:Human genetics

    pub_type: 杂志文章

    doi:10.1007/BF00196236

    authors: Schnee J,Aulehla-Scholz C,Eigel A,Horst J

    更新日期:1990-03-01 00:00:00

  • A cytogenetic survey of an institution for the mentally retarded. II. C-band chromosome heteromorphisms.

    abstract::Heteromorphisms of chromosomes 1, 9, and 16 were studied by C-banding in a population of 403 mentally retarded individuals from diverse ethnic groups. A significant difference in the distribution of heteromorphisms was found among the different racial groups. The Orientals had a larger C-band on chromosome 1 and a sma...

    journal_title:Human genetics

    pub_type: 杂志文章

    doi:10.1007/BF00277571

    authors: Matsuura J,Mayer M,Jacobs P

    更新日期:1978-11-24 00:00:00

  • PstI identifies biallelic DNA polymorphism of the human casein kinase 2 alpha gene (CSNK2A1).

    abstract::cDNA probe of the casein kinase 2 alpha subunit gene detects a biallelic PstI polymorphism. This restriction fragment length polymorphism is the first known genetic marker of this gene. ...

    journal_title:Human genetics

    pub_type: 杂志文章

    doi:10.1007/BF00201680

    authors: Singh S,Jantke I,Simon M,Meybohm I,Boldyreff B,Issinger O,Goedde HW

    更新日期:1994-04-01 00:00:00

  • Identification and characterization of a new human cDNA from chromosome 21q22.3 encoding a basic nuclear protein.

    abstract::Congenital heart disease (CHD) affects over 40% of Down syndrome (DS) patients. The region proposed to contain the gene(s) for DS CHD has been restricted to 21q22.2-22.3, from D21S55 to MX1. The identification and functional characterization of the genes mapping to this region is a necessary step to understand the pat...

    journal_title:Human genetics

    pub_type: 杂志文章

    doi:10.1007/s004390050693

    authors: Egeo A,Mazzocco M,Sotgia F,Arrigo P,Oliva R,Bergonòn S,Nizetic D,Rasore-Quartino A,Scartezzini P

    更新日期:1998-03-01 00:00:00

  • Multiple products in the protein truncation test due to alternative splicing in the adenomatous polyposis coli (APC) gene.

    abstract::Reverse transcription-polymerase chain reaction (RT-PCR)-based analyses of the adenomatous polyposis coli (APC) gene encompassing exons 1-15 revealed a complex pattern of products that were due to alternative splicing of exons 9, 10A and 14. The multiplicity of polypeptide chains obtained from T7-promoter-directed in ...

    journal_title:Human genetics

    pub_type: 杂志文章

    doi:10.1007/s004390050254

    authors: Bala S,Kraus C,Wijnen J,Meera Khan P,Ballhausen WG

    更新日期:1996-11-01 00:00:00

  • ELMOD3, a novel causative gene, associated with human autosomal dominant nonsyndromic and progressive hearing loss.

    abstract::Autosomal dominant nonsyndromic hearing loss (ADNSHL) is a highly genetically heterogeneous disorder. Up to date only approximately 37 ADNSHL-causing genes have been identified. The goal of this study was to determine the causative gene in a five-generation Chinese family with ADNSHL. A Chinese family was ascertained....

    journal_title:Human genetics

    pub_type: 杂志文章

    doi:10.1007/s00439-018-1885-0

    authors: Li W,Sun J,Ling J,Li J,He C,Liu Y,Chen H,Men M,Niu Z,Deng Y,Li M,Li T,Wen J,Sang S,Li H,Wan Z,Richard EM,Chapagain P,Yan D,Liu XZ,Mei L,Feng Y

    更新日期:2018-04-01 00:00:00

  • Genetic analysis of human lymphocyte proteins by two-dimensional gel electrophoresis. VII. Genetic polymorphism of cytosol polypeptide with molecular weight of 38,000.

    abstract::We describe a genetic polymorphism of cytosol polypeptide with mol. wt. of 38,000 detected in phytohemagglutinin (PHA)-stimulated peripheral blood lymphocytes by two-dimensional gel electrophoresis. Three different electrophoretic phenotypes (type 1-1, 2-1, 2-2) of the polypeptide have been identified in a Japanese po...

    journal_title:Human genetics

    pub_type: 杂志文章

    doi:10.1007/BF00295371

    authors: Kondo I,Yamamoto T,Yamakawa K,Shibasaki M,Hamaguchi H

    更新日期:1985-01-01 00:00:00

  • Malate dehydrogenase types in the Asian-Pacific area, and a description of new phenotypes.

    abstract::A survey of more than 21 000 haemolysates from blood samples collected in various parts of south and southeast Asia, Australasia and the Western Pacific and examined in this laboratory has revealed several new alleles controlling variants of sMDH; in addition, further information has been provided on the distribution ...

    journal_title:Human genetics

    pub_type: 杂志文章

    doi:10.1007/BF00396480

    authors: Blake NM

    更新日期:1978-07-12 00:00:00

  • Bi-allelic BRWD1 variants cause male infertility with asthenoteratozoospermia and likely primary ciliary dyskinesia.

    abstract::Genetics-associated asthenoteratozoospermia is often seen in patients with multiple morphological abnormalities of the sperm flagella (MMAF). Although 24 causative genes have been identified, these explain only approximately half of patients with MMAF. Since sperm flagella and motile cilia (especially respiratory cili...

    journal_title:Human genetics

    pub_type: 杂志文章

    doi:10.1007/s00439-020-02241-4

    authors: Guo T,Tu CF,Yang DH,Ding SZ,Lei C,Wang RC,Liu L,Kang X,Shen XQ,Yang YF,Tan ZP,Tan YQ,Luo H

    更新日期:2021-01-03 00:00:00

  • The French Canadian Tay-Sachs disease deletion mutation: identification of probable founders.

    abstract::Tay-Sachs disease (TSD) is an inherited neurodegenerative ganglioside storage disorder caused by deficiency of the hexosaminidase A enzyme. A deletion allele (FCD) at the HEXA locus has attained high frequency in the French Canadian population. The distribution of affected probands shows a likely center of diffusion f...

    journal_title:Human genetics

    pub_type: 杂志文章

    doi:10.1007/BF00207048

    authors: De Braekeleer M,Hechtman P,Andermann E,Kaplan F

    更新日期:1992-04-01 00:00:00

  • Population genetic characteristics of the D1S80 locus in seven human populations.

    abstract::We have analyzed the allele frequency distribution at the highly polymorphic variable number of tandem repeat (VNTR) locus D1S80 (pMCT118) in seven ethnic populations (namely, New Guinea Highlanders of Papua New Guinea, Dogrib Indians of Canada, Pehuenche Indians of Chile, American and Western Samoans, Kacharis of Nor...

    journal_title:Human genetics

    pub_type: 杂志文章

    doi:10.1007/BF00208279

    authors: Deka R,DeCroo S,Jin L,McGarvey ST,Rothhammer F,Ferrell RE,Chakraborty R

    更新日期:1994-09-01 00:00:00

  • ATM haplotypes and associated mutations in Iranian patients with ataxia-telangiectasia: recurring homozygosity without a founder haplotype.

    abstract::Ataxia-telangiectasia (A-T) is an autosomal recessive disorder caused by mutations in the ATM gene. The ATM gene spans more than 150 kb at chromosomal region 11q23.1 and encodes a product of 3,056 amino acids. The ATM protein is a serine/threonine protein kinase and is involved in oxidative stress, cell cycle control,...

    journal_title:Human genetics

    pub_type: 杂志文章

    doi:10.1007/s00439-005-1254-7

    authors: Babaei M,Mitui M,Olson ER,Gatti RA

    更新日期:2005-07-01 00:00:00

  • Ring chromosome 15 syndrome.

    abstract::Two new cases of ring chromosome 15 are reported. A review of the nine cases described in the literature shows that ring chromosomes 15 are associated with a rather uniform phenotype characterized by slight to moderate mental retardation, marked pre- and postnatal growth failure, triangular face, and short hands and f...

    journal_title:Human genetics

    pub_type: 杂志文章

    doi:10.1007/BF00278290

    authors: Fryns JP,Timmermans J,Hondt FD,François B,Emmery L,van den Berghe H

    更新日期:1979-09-02 00:00:00

  • Association of three-gene interaction among MTHFR, ALOX5AP and NOTCH3 with thrombotic stroke: a multicenter case-control study.

    abstract::Stroke is a common complex trait and does not follow Mendelian pattern of inheritance. Gene-gene or gene-environment interactions may be responsible for the complex trait. How the interactions contribute to stroke is still under research. This study aimed to explore the association between gene-gene interactions and s...

    journal_title:Human genetics

    pub_type: 杂志文章,多中心研究

    doi:10.1007/s00439-009-0659-0

    authors: Liu J,Sun K,Bai Y,Zhang W,Wang X,Wang Y,Wang H,Chen J,Song X,Xin Y,Liu Z,Hui R

    更新日期:2009-06-01 00:00:00

  • The mutation delta F508 on Dutch cystic fibrosis chromosomes: frequency and relation to patients age at diagnosis.

    abstract::We tested 190 chromosomes from Dutch cystic fibrosis (CF) patients and carriers for the presence or absence of the major CF mutation delta F508. This mutation was found on 77% of the Dutch CF chromosomes. We observed a significant difference in the distribution of the ages at diagnosis between homozygotes for delta F5...

    journal_title:Human genetics

    pub_type: 杂志文章

    doi:10.1007/BF02428281

    authors: Halley DJ,Veeze HJ,Sandkuyl LA,Wesby-van Swaay E,van Damme NH,Deelen WH,Witte JE,Niermeijer MF

    更新日期:1990-09-01 00:00:00