The PHD domain of the sea urchin RAG2 homolog, SpRAG2L, recognizes dimethylated lysine 4 in histone H3 tails.

Abstract:

:V(D)J recombination is a somatic gene rearrangement process that assembles antigen receptor genes from individual segments during lymphocyte development. The access of the RAG1/RAG2 recombinase to these gene segments is regulated at the level of chromatin modifications, in particular histone tail modifications. Trimethylation of lysine 4 in histone H3 (H3K4me3) correlates with actively recombining gene elements, and this mark is recognized and interpreted by the plant homeodomain (PHD) of RAG2. Here we report that the PHD domain of the only known invertebrate homolog of RAG2, the SpRAG2L protein of the purple sea urchin (Strongylocentrotus purpuratus) also binds to methylated histones, but with a unique preference for H3K4me2. While the cognate substrate for the sea urchin RAG1L/RAG2L complex remains elusive, the affinity for histone tails and the nuclear localization of ectopically expressed SpRAG2L strongly support the model that this enzyme complex exerts its activity on DNA in the context of chromatin.

journal_name

Dev Comp Immunol

authors

Wilson DR,Norton DD,Fugmann SD

doi

10.1016/j.dci.2008.03.012

subject

Has Abstract

pub_date

2008-01-01 00:00:00

pages

1221-30

issue

10

eissn

0145-305X

issn

1879-0089

pii

S0145-305X(08)00079-7

journal_volume

32

pub_type

杂志文章
  • Identification and functional characterization of Dicer2 and five single VWC domain proteins of Litopenaeus vannamei.

    abstract::Dicer (Dcr) is the key protein of the RNA interference (RNAi) pathway. To investigate the role of the RNAi pathway in shrimp anti-viral immunity, Litopenaeus vannamei Dcr2 (designated as LvDcr2) was identified and characterized. The full-length cDNA of LvDcr2 was 5513bp long, with an open reading frame encoding a puta...

    journal_title:Developmental and comparative immunology

    pub_type: 杂志文章

    doi:10.1016/j.dci.2011.01.010

    authors: Chen YH,Jia XT,Zhao L,Li CZ,Zhang S,Chen YG,Weng SP,He JG

    更新日期:2011-06-01 00:00:00

  • The diversity of C-type lectins in the genome of a basal metazoan, Nematostella vectensis.

    abstract::C-type lectins (CTLs) are involved in cell-cell adhesion, recognition, and innate immunity in higher vertebrates, but little is known about CTLs in basal metazoans. The recent sequencing of the cnidarian Nematostella vectensis genome allowed us to explore the CTL-like gene family at the base of metazoan evolution. Six...

    journal_title:Developmental and comparative immunology

    pub_type: 杂志文章

    doi:10.1016/j.dci.2009.01.008

    authors: Wood-Charlson EM,Weis VM

    更新日期:2009-08-01 00:00:00

  • Developmental expression of alloantigen systems in the chicken.

    abstract::The different allelic forms of nine non-Mhc alloantigen systems of the chicken were examined for developmental expression on erythrocytes isolated from embryos and young chicks. Polyclonal alloantisera raised against the different antigens were used to detect these antigens on the cell surface by hemagglutination as w...

    journal_title:Developmental and comparative immunology

    pub_type: 杂志文章

    doi:10.1016/s0145-305x(99)00042-7

    authors: Kopti F,Stevens SL,Briles WE

    更新日期:1999-10-01 00:00:00

  • Characterization, expression and function analysis of the TLR3 gene in golden pompano (Trachinotus ovatus).

    abstract::Toll-like receptors (TLRs)are pattern recognition receptors (PRRs) that are important in invertebrate innate immunity for the recognition and elimination of pathogens. Although they were reported in many fishes, Toll-like receptors subfamily contain a large number of members with different functions that need to resea...

    journal_title:Developmental and comparative immunology

    pub_type: 杂志文章

    doi:10.1016/j.dci.2020.103977

    authors: Wu M,Zhu KC,Guo HY,Guo L,Liu B,Jiang SG,Zhang DC

    更新日期:2021-04-01 00:00:00

  • Encapsulation ability of Drosophila melanogaster: a genetic analysis.

    abstract::Insects are able to effectively recognize parasitoid eggs or larvae and to eliminate them by formation of a hemocytic capsule. Although the cellular process is now well documented, the genetic aspects of recognition of foreignness and the encapsulation process are still poorly understood. Experiments using the isofema...

    journal_title:Developmental and comparative immunology

    pub_type: 杂志文章

    doi:10.1016/0145-305x(85)90112-0

    authors: Carton Y,Boulétreau M

    更新日期:1985-04-01 00:00:00

  • Crayfish immunity - Recent findings.

    abstract::Freshwater crayfish is an important commodity as well as a successful model for studies on crustacean immunity. Due to the ease with which they are kept and the available methods for hemocyte separation and culture they have proven to be very useful. Here, recent progress regarding pattern recognition, immune effector...

    journal_title:Developmental and comparative immunology

    pub_type: 杂志文章,评审

    doi:10.1016/j.dci.2017.05.010

    authors: Cerenius L,Söderhäll K

    更新日期:2018-03-01 00:00:00

  • Humoral immunity factors in cynomolgus macaques (Macaca fascicularis) serum: immunoglobulins and total light chains in nursing dams.

    abstract::This study was aimed at the identification of variations in humoral immunity parameters during the lactation period in macaque females, a recognized model in reproductive physiology and pathology. The importance of such evaluation is evidenced in particular by the central role played by the maternally transferred immu...

    journal_title:Developmental and comparative immunology

    pub_type: 杂志文章

    doi:10.1016/0145-305x(96)00006-7

    authors: D'Ovidio MC,Pace M,Via F,Iale E,Turillazzi PG,Strom R

    更新日期:1996-03-01 00:00:00

  • Molecular cloning of chicken interleukin-5 receptor α-chain and analysis of its binding specificity.

    abstract::Interaction between interleukin (IL)-5 and its receptor (IL-5R) is important for the regulation of immunity against worm infections, allergic reactions and B cell response in mammals. In this study, we identified a full-length cDNA encoding chicken IL-5R α-chain (chIL-5Rα). The deduced amino acid sequence showed 41-43...

    journal_title:Developmental and comparative immunology

    pub_type: 杂志文章

    doi:10.1016/j.dci.2012.02.013

    authors: Fukushima Y,Miyai T,Kumagae M,Horiuchi H,Furusawa S

    更新日期:2012-07-01 00:00:00

  • Molecular characterisation of RIG-I-like helicases in the black flying fox, Pteropus alecto.

    abstract::The RIG-I like helicases, RIG-I, mda5 and LGP2 are an evolutionarily conserved family of cytosolic pattern recognition receptors important in the recognition of viral RNA, and responsible for the innate induction of interferons and proinflammatory cytokines upon viral infection. Bats are natural reservoir hosts to a v...

    journal_title:Developmental and comparative immunology

    pub_type: 杂志文章

    doi:10.1016/j.dci.2011.11.008

    authors: Cowled C,Baker ML,Zhou P,Tachedjian M,Wang LF

    更新日期:2012-04-01 00:00:00

  • Role of lectins in the innate immunity of horseshoe crab.

    abstract::We have purified five types of lectins, named tachylectins, from circulating hemocytes and hemolymph plasma of the Japanese horseshoe crab, Tachypleus tridentatus. Tachylectin-1 interacts with Gram-negative bacteria probably through 2-keto-3-deoxyoctonate, one of the constituents of lipopolysaccharides (LPS). Tachylec...

    journal_title:Developmental and comparative immunology

    pub_type: 杂志文章,评审

    doi:10.1016/s0145-305x(99)00019-1

    authors: Kawabata S,Iwanaga S

    更新日期:1999-06-01 00:00:00

  • Cloning and sequencing of caspase 6 in rainbow trout, Oncorhynchus mykiss, and analysis of its expression under conditions known to induce apoptosis.

    abstract::The rainbow trout caspase 6 gene has been cloned and sequenced. The open reading frame consisted of 906bp, which translated into a protein of 302 amino acids, containing the caspase active site pentapeptide (QACRG) and the caspase family signature (HADADCFVCVFLSHG). Amino acids involved in catalysis and those known to...

    journal_title:Developmental and comparative immunology

    pub_type: 杂志文章

    doi:10.1016/s0145-305x(00)00061-6

    authors: Laing KJ,Holland J,Bonilla S,Cunningham C,Secombes CJ

    更新日期:2001-05-01 00:00:00

  • Identification, characterization and bioactivity of tumor necrosis factor (TNF)-related apoptosis-inducing ligand from Equus caballus.

    abstract::Tumor necrosis factor (TNF)-related apoptosis-inducing ligand (TRAIL) is a member of the TNF superfamily and plays multifunctional roles in the immune system. In the present study, a homolog of TRAIL from the Mongolian horse (named ecTRAIL) was identified and characterized. The 870-bp open reading frame encodes a poly...

    journal_title:Developmental and comparative immunology

    pub_type: 杂志文章

    doi:10.1016/j.dci.2016.08.018

    authors: Ma L,Sang M,Zhang J,Zhang S

    更新日期:2017-02-01 00:00:00

  • A comparative synthesis of transcriptomic analyses reveals major differences between WSSV-susceptible Litopenaeus vannamei and WSSV-refractory Macrobrachium rosenbergii.

    abstract::Since the 1990s White Spot Syndrome Virus (WSSV) has severely affected shrimp aquaculture worldwide causing a global pandemic of White Spot Disease (WSD) in penaeid culture. However, not all decapod species that can be infected by WSSV show the same susceptibility to the virus, thus raising interesting questions regar...

    journal_title:Developmental and comparative immunology

    pub_type: 杂志文章

    doi:10.1016/j.dci.2019.103564

    authors: Peruzza L,Thamizhvanan S,Vimal S,Vinaya Kumar K,Shekhar MS,Smith VJ,Hauton C,Vijayan KK,Sahul Hameed AS

    更新日期:2020-03-01 00:00:00

  • miRNAs associated with immune response in teleost fish.

    abstract::MicroRNAs (miRNAs) have been identified as important post transcriptional regulators of gene expression. In higher vertebrates, a subset of miRNAs has been identified as important regulators of a number of key genes in immune system gene networks, and this paper review recent studies on miRNAs associated with immune r...

    journal_title:Developmental and comparative immunology

    pub_type: 杂志文章,评审

    doi:10.1016/j.dci.2017.02.023

    authors: Andreassen R,Høyheim B

    更新日期:2017-10-01 00:00:00

  • High doses of sodium ascorbate act as a prooxidant and protect gnotobiotic brine shrimp larvae (Artemia franciscana) against Vibrio harveyi infection coinciding with heat shock protein 70 activation.

    abstract::Ascorbate is an essential nutrient commonly regarded as an antioxidant. In this study, using axenic brine shrimp and pathogenic strain Vibrio harveyi as the host-pathogen model, we confirmed that pretreatment of sodium ascorbate (NaAs), at an optimum concentration, was a prooxidant by generation of hydrogen peroxide, ...

    journal_title:Developmental and comparative immunology

    pub_type: 杂志文章

    doi:10.1016/j.dci.2018.11.007

    authors: Han B,Kaur VI,Baruah K,Nguyen VD,Bossier P

    更新日期:2019-03-01 00:00:00

  • B-cell development in bovine fetuses proceeds via a pre-B like cell in bone marrow and lymph nodes.

    abstract::The production of B cells and the primary antibody repertoire in mammalian species other than rodents or man appears to depend on gut-associated lymphoid tissue. Bovine B cells are generated in ileal Peyer's patch from late gestational to juvenile age. However, little is known about where and when the bona fide B lymp...

    journal_title:Developmental and comparative immunology

    pub_type: 杂志文章

    doi:10.1016/j.dci.2010.03.012

    authors: Ekman A,Pessa-Morikawa T,Liljavirta J,Niku M,Iivanainen A

    更新日期:2010-08-01 00:00:00

  • Mucosal immunoglobulins and B cells of teleost fish.

    abstract::As physical barriers that separate teleost fish from the external environment, mucosae are also active immunological sites that protect them against exposure to microbes and stressors. In mammals, the sites where antigens are sampled from mucosal surfaces and where stimulation of naïve T and B lymphocytes occurs are k...

    journal_title:Developmental and comparative immunology

    pub_type: 杂志文章,评审

    doi:10.1016/j.dci.2011.11.009

    authors: Salinas I,Zhang YA,Sunyer JO

    更新日期:2011-12-01 00:00:00

  • In vitro interaction of Perkinsus marinus merozoites with eastern and Pacific oyster hemocytes.

    abstract::This study compared hemocyte responses of eastern and Pacific oysters to Perkinsus marinus, in vitro. Except for the percentage of hemocytes associated with P. marinus there was little or no significant difference between eastern and Pacific oysters with regard to their hemocytic response to P. marinus. In phagocytosi...

    journal_title:Developmental and comparative immunology

    pub_type: 杂志文章

    doi:10.1016/0145-305x(95)00017-n

    authors: La Peyre JF,Chu FL,Vogelbein WK

    更新日期:1995-07-01 00:00:00

  • Mucosal immunity in the gut: the non-vertebrate perspective.

    abstract::Much is now known about the vertebrate mechanisms involved in mucosal immunity, and the requirement of commensal microbiota at mucosal surfaces for the proper functioning of the immune system. In comparison, very little is known about the mechanisms of immunity at the barrier epithelia of non-vertebrate organisms. The...

    journal_title:Developmental and comparative immunology

    pub_type: 杂志文章,评审

    doi:10.1016/j.dci.2013.03.009

    authors: Garcia-Garcia E,Galindo-Villegas J,Mulero V

    更新日期:2013-07-01 00:00:00

  • Lymphopineal tissue in the chicken.

    abstract::We have studied the chicken's pineal gland by light and electron microscopy at 3 and 4 weeks of age. The results indicated that lymphocytes, plasma cells, secretory cells, basophil and eosinophil granulocytes enter the parenchyma and a new histologically defined tissue is formed which we call lymphopineal tissue. Insi...

    journal_title:Developmental and comparative immunology

    pub_type: 杂志文章

    doi:10.1016/0145-305x(84)90068-5

    authors: Olah I,Glick B

    更新日期:1984-10-01 00:00:00

  • A Kazal-type serine proteinase inhibitor SPIPm2 from the black tiger shrimp Penaeus monodon is involved in antiviral responses.

    abstract::A five-domain Kazal-type serine proteinase inhibitor, SPIPm2, from Penaeus monodon has recently been implicated in antiviral responses for it is up-regulated upon viral infection and needs further studies. The SPIPm2 genomic gene was composed of seven exons and six introns. The genomic DNA segments coding for each Kaz...

    journal_title:Developmental and comparative immunology

    pub_type: 杂志文章

    doi:10.1016/j.dci.2010.06.001

    authors: Donpudsa S,Ponprateep S,Prapavorarat A,Visetnan S,Tassanakajon A,Rimphanitchayakit V

    更新日期:2010-10-01 00:00:00

  • Molecular cloning of the porcine RANTES promoter: functional characterization of dsDNA/dsRNA response elements in PK-15 cells.

    abstract::The chemokine RANTES plays an essential role in inflammation and immune response. In this study, we cloned the nucleotide sequence of the 5'-flanking region of the porcine RANTES (poRANTES) gene and characterized the regulatory elements that activate transcription. Analyses of a series of 5' deletion constructs demons...

    journal_title:Developmental and comparative immunology

    pub_type: 杂志文章

    doi:10.1016/j.dci.2010.10.008

    authors: Wang D,Fang L,Li P,Chen Q,Luo R,Chen H,Xiao S

    更新日期:2011-03-01 00:00:00

  • C-type lectin B (SpCTL-B) regulates the expression of antimicrobial peptides and promotes phagocytosis in mud crab Scylla paramamosain.

    abstract::As pattern recognition receptors, C-type lectins (CTLs) play important roles in immune system of crustaceans through identifying and binding to the conservative pathogen-associated molecular patterns (PAMPs) on pathogen surfaces. In this study, a new CTL, SpCTL-B, was identified from the hemocytes of mud crab Scylla p...

    journal_title:Developmental and comparative immunology

    pub_type: 杂志文章

    doi:10.1016/j.dci.2018.02.016

    authors: Wei X,Wang L,Sun W,Zhang M,Ma H,Zhang Y,Zhang X,Li S

    更新日期:2018-07-01 00:00:00

  • Molecular cloning, expression and functional analysis of interleukin-8 (IL-8) in South African clawed frog (Xenopus laevis).

    abstract::In this study, an IL-8 homologue has been cloned and identified from South African clawed frog Xenopus laevis (designated XlIL-8). The open reading frame (ORF) of XlIL-8 consists of 312 bases encoding a protein of 103 amino acids. The chemokine CXC domain, which contained Glu-Leu-Arg (ELR) motif and four cysteine resi...

    journal_title:Developmental and comparative immunology

    pub_type: 杂志文章

    doi:10.1016/j.dci.2011.04.005

    authors: Cui X,Han Y,Pan Y,Xu X,Ren W,Zhang S

    更新日期:2011-11-01 00:00:00

  • Differential gene expression profile in hepatopancreas of WSSV-resistant shrimp (Penaeus japonicus) by suppression subtractive hybridization.

    abstract::In order to find the immune-relevant factors responsible for the virus resistance in the WSSV-resistant shrimp, a suppression subtractive hybridization method was employed to identify differentially expressed genes and their expression profile in the hepatopancreas of the virus-resistant penaeid shrimp. Thirty five ge...

    journal_title:Developmental and comparative immunology

    pub_type: 杂志文章

    doi:10.1016/j.dci.2004.07.001

    authors: Pan D,He N,Yang Z,Liu H,Xu X

    更新日期:2005-01-01 00:00:00

  • Ontogeny of the rat thymus micro-environment: development of the interdigitating cell and macrophage populations.

    abstract::The ontogeny of the rat thymus micro-environment and in particular the development of the interdigitating cell (IDC) and macrophage (M phi) populations has been studied. At day 15 of fetal life the thymus consisted of an epithelial primordium in which some Thy-1 positive thymocytes were present around local capillarie...

    journal_title:Developmental and comparative immunology

    pub_type: 杂志文章

    doi:10.1016/0145-305x(84)90077-6

    authors: Duijvestijn AM,Sminia T,Köhler YG,Janse EM,Hoefsmit EC

    更新日期:1984-10-01 00:00:00

  • Functional characterization of avidins in amphioxus Branchiostoma japonicum: Evidence for a dual role in biotin-binding and immune response.

    abstract::Avidin is well known for its high affinity to biotin and has been found in many egg-laying vertebrate species. However, little is known about avidin in invertebrate species to date. Here we clearly showed the presence of two avidin genes, Bjavidin1 and Bjavidin2, in the amphioxus Branchiostoma japonicum, the first one...

    journal_title:Developmental and comparative immunology

    pub_type: 杂志文章

    doi:10.1016/j.dci.2017.01.006

    authors: Guo X,Xin J,Wang P,Du X,Ji G,Gao Z,Zhang S

    更新日期:2017-05-01 00:00:00

  • Differential expression and functional diversification of diverse immunoglobulin domain-containing protein (DICP) family in three gynogenetic clones of gibel carp.

    abstract::Diverse immunoglobulin (Ig) domain-containing protein (DICP) family is a novel bony fish-specific multi-gene family encoding diversified immune receptors. However, their function and the implication of binding partners remain unknown. In this study, we first identified 28 DICPs from three gibel carp gynogenetic clones...

    journal_title:Developmental and comparative immunology

    pub_type: 杂志文章

    doi:10.1016/j.dci.2018.03.013

    authors: Gao FX,Lu WJ,Wang Y,Zhang QY,Zhang YB,Mou CY,Li Z,Zhang XJ,Liu CW,Zhou L,Gui JF

    更新日期:2018-07-01 00:00:00

  • Tissue-specific reduction in DC-SIGN expression correlates with progression of pathogenic simian immunodeficiency virus infection.

    abstract::Studies were undertaken to determine whether previously described reductions in splenic DC-SIGN expression in simian acquired immune deficiency syndrome (AIDS) are limited to pathogenic simian immunodeficiency virus (SIV) infection. DC-SIGN expression was evaluated by immunohistochemistry in lymphoid tissues from AIDS...

    journal_title:Developmental and comparative immunology

    pub_type: 杂志文章

    doi:10.1016/j.dci.2008.06.006

    authors: Yearley JH,Kanagy S,Anderson DC,Dalecki K,Pauley DR,Suwyn C,Donahoe RM,McClure HM,O'Neil SP

    更新日期:2008-01-01 00:00:00

  • Trypanosoma carassii calreticulin binds host complement component C1q and inhibits classical complement pathway-mediated lysis.

    abstract::Trypanosoma carassii is an extracellular parasite of economically important fish species that has evolved several strategies to circumvent host immune responses. Proteomic analysis of the excreted/secreted (ES) and surface molecules of the parasite has revealed a number of proteins that may be involved in host-parasit...

    journal_title:Developmental and comparative immunology

    pub_type: 杂志文章

    doi:10.1016/j.dci.2009.11.005

    authors: Oladiran A,Belosevic M

    更新日期:2010-04-01 00:00:00