The C-terminal region of the meiosis-specific protein kinase Ime2 mediates protein instability and is required for normal spore formation in budding yeast.

Abstract:

:The cyclin-dependent kinase Cdk1 and the related kinase Ime2 act in concert to trigger progression of the meiotic cell cycle in the yeast Saccharomyces cerevisiae. These kinases share several functions and substrates during meiosis, but their regulation seems to be clearly different. In contrast to Cdk1, no cyclin seems to be involved in the regulation of Ime2 activity. Ime2 is a highly unstable protein, and we aimed to elucidate the relevance of Ime2 instability. We first determined the sequence elements required for Ime2 instability by constructing a set of deletions in the IME2 gene. None of the small deletions in Ime2 affected its instability, but deletion of a 241 amino acid C-terminal region resulted in a highly stabilized protein. Thus, the C-terminal domain of Ime2 is important for mediating protein instability. The stabilized, truncated Ime2 protein is highly active in vivo. Replacement of the IME2 gene with the truncated IME2DeltaC241 in diploid strains did not interfere with meiotic nuclear divisions, but caused abnormalities in spore formation, as manifested by the appearance of many asci with a reduced spore number such as triads and dyads. The truncated Ime2 caused a reduction of spore number in a dominant manner. We conclude that downregulation of Ime2 kinase activity mediated by the C-terminal domain is required for the efficient production of normal four-spore asci. Our data suggest a role for Ime2 in spore number control in S. cerevisiae.

journal_name

J Mol Biol

authors

Sari F,Heinrich M,Meyer W,Braus GH,Irniger S

doi

10.1016/j.jmb.2008.02.001

subject

Has Abstract

pub_date

2008-04-18 00:00:00

pages

31-43

issue

1

eissn

0022-2836

issn

1089-8638

pii

S0022-2836(08)00161-7

journal_volume

378

pub_type

杂志文章
  • All-D peptides recognized by an anti-carbohydrate antibody identified from a positional scanning library.

    abstract::Monoclonal antibodies recognize antigens with high affinity and specificity, but the structural basis for molecular mimicry remains unclear. It is often assumed that cross-reactive antigens share some structural similarity that is specifically recognized by a monoclonal antibody. Recent studies using combinatorial lib...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1006/jmbi.1998.2137

    authors: Pinilla C,Appel JR,Campbell GD,Buencamino J,Benkirane N,Muller S,Greenspan NS

    更新日期:1998-11-13 00:00:00

  • Fluid and condensed ApoA-I/phospholipid monolayers provide insights into ApoA-I membrane insertion.

    abstract::Apolipoprotein A-I (ApoA-I) is a protein implicated in the solubilization of lipids and cholesterol from cellular membranes. The study of ApoA-I in phospholipid (PL) monolayers brings relevant information about ApoA-I/PL interactions. We investigated the influence of PL charge and acyl chain organization on the intera...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2011.04.006

    authors: Chièze L,Bolanos-Garcia VM,Pinot M,Desbat B,Renault A,Beaufils S,Vié V

    更新日期:2011-07-01 00:00:00

  • CryptoSite: Expanding the Druggable Proteome by Characterization and Prediction of Cryptic Binding Sites.

    abstract::Many proteins have small-molecule binding pockets that are not easily detectable in the ligand-free structures. These cryptic sites require a conformational change to become apparent; a cryptic site can therefore be defined as a site that forms a pocket in a holo structure, but not in the apo structure. Because many p...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2016.01.029

    authors: Cimermancic P,Weinkam P,Rettenmaier TJ,Bichmann L,Keedy DA,Woldeyes RA,Schneidman-Duhovny D,Demerdash ON,Mitchell JC,Wells JA,Fraser JS,Sali A

    更新日期:2016-02-22 00:00:00

  • Folding of the Tetrahymena ribozyme by polyamines: importance of counterion valence and size.

    abstract::Polyamines are abundant metabolites that directly influence gene expression. Although the role of polyamines in DNA condensation is well known, their role in RNA folding is less understood. Non-denaturing gel electrophoresis was used to monitor the equilibrium folding transitions of the Tetrahymena ribozyme in the pre...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2004.06.008

    authors: Koculi E,Lee NK,Thirumalai D,Woodson SA

    更新日期:2004-07-30 00:00:00

  • Sequence analysis of the complete Caenorhabditis elegans myosin heavy chain gene family.

    abstract::The sequences of three myosin heavy chain (MHC) genes from Caenorhabditis elegans, myo-1, 2 and 3, are presented. These genes, together with unc-54, comprise the entire nematode sacromeric MHC family. Comparison of nematode MHC sequences and sarcomeric, smooth and non-muscle MHCs from other organisms highlights conser...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/0022-2836(89)90229-5

    authors: Dibb NJ,Maruyama IN,Krause M,Karn J

    更新日期:1989-02-05 00:00:00

  • A short DNA sequence from lambda phage inhibits protein synthesis in Escherichia coli rap.

    abstract::The Escherichia coli rap mutant inhibits vegetative growth of bacteriophage lambda. Phage mutations termed bar, which overcome the rap defect, have been mapped to three genetic loci in the pL operon. Plasmids with a lambda wild-type bar DNA segment cloned downstream from an active promoter cannot be maintained in rap ...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/s0022-2836(05)80316-x

    authors: Pérez-Morga D,Guarneros G

    更新日期:1990-11-20 00:00:00

  • Molecular insights into the control of transcription initiation at the Staphylococcus aureus agr operon.

    abstract::The accessory gene regulatory (agr) operon of the opportunistic human pathogen Staphylococcus aureus is a prime pathogenesis factor in this bacterium. The agr operon consists of two transcription units, RNAII and RNAIII, which are transcribed from divergent promoters, P2 and P3, respectively. RNAII encodes a quorum-se...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2011.06.018

    authors: Reynolds J,Wigneshweraraj S

    更新日期:2011-10-07 00:00:00

  • Repressor assembly at trp binding sites is dependent on the identity of the intervening dinucleotide between the binding half sites.

    abstract::The interaction of trp repressor with its DNA targets is unusual in that specific recognition in this system does not rely exclusively on direct hydrogen bonds to the DNA bases that are crucial for sequence-specific recognition. It has been suggested that trp operators are mainly recognized by water-mediated interacti...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1006/jmbi.1996.0826

    authors: Bareket-Samish A,Cohen I,Haran TE

    更新日期:1997-03-21 00:00:00

  • Regulation of prion protein expression by noncoding regions of the Prnp gene.

    abstract::Expression of the cellular prion protein is necessary for the transmission and propagation of prion diseases. Increasing the level of prion protein expression decreases the incubation period for these diseases. Therefore, understanding the regulation of prion protein expression could be critical for treating or preven...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2007.02.086

    authors: Haigh CL,Wright JA,Brown DR

    更新日期:2007-05-11 00:00:00

  • DNA-directed DNA polymerase and strand displacement activity of the reverse transcriptase encoded by the R2 retrotransposon.

    abstract::R2 elements are non-long terminal repeat (non-LTR) retrotransposons with a single open reading-frame encoding reverse transcriptase, DNA endonuclease and nucleic acid-binding domains. The elements are specialized for insertion into the 28 S rRNA genes of many animal phyla. The R2-encoded activities initiate retrotrans...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2007.09.047

    authors: Kurzynska-Kokorniak A,Jamburuthugoda VK,Bibillo A,Eickbush TH

    更新日期:2007-11-23 00:00:00

  • Folding of the yeast prion protein Ure2: kinetic evidence for folding and unfolding intermediates.

    abstract::The Saccharomyces cerevisiae non-Mendelian factor [URE3] propagates by a prion-like mechanism, involving aggregation of the chromosomally encoded protein Ure2. The N-terminal prion domain (PrD) of Ure2 is required for prion activity in vivo and amyloid formation in vitro. However, the molecular mechanism of the prion-...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1006/jmbi.2001.5234

    authors: Galani D,Fersht AR,Perrett S

    更新日期:2002-01-11 00:00:00

  • The C-terminal lysine of Ogg2 DNA glycosylases is a major molecular determinant for guanine/8-oxoguanine distinction.

    abstract::7,8-Dihydro-8-oxoguanine (8-oxoG) is a major oxidative lesion found in DNA. The 8-oxoguanine DNA glycosylases (Ogg) responsible for the removal of 8-oxoG are divided into three families Ogg1, Ogg2 and AGOG. The Ogg2 members are devoid of the recognition loop used by Ogg1 to discriminate between 8-oxoG and guanine and ...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2010.01.024

    authors: Faucher F,Wallace SS,Doublié S

    更新日期:2010-03-19 00:00:00

  • Sequence context modulates the stability of a GxxxG-mediated transmembrane helix-helix dimer.

    abstract::To quantify the relationship between sequence and transmembrane dimer stability, a systematic mutagenesis and thermodynamic study of the protein-protein interaction residues in the glycophorin A transmembrane helix-helix dimer was carried out. The results demonstrate that the glycophorin A transmembrane sequence dimer...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2004.06.042

    authors: Doura AK,Kobus FJ,Dubrovsky L,Hibbard E,Fleming KG

    更新日期:2004-08-20 00:00:00

  • Folding mechanism of FIS, the intertwined, dimeric factor for inversion stimulation.

    abstract::FIS, the factor for inversion stimulation, from Escherichia coli and other enteric bacteria, is an interwined alpha-helical homodimer. Size exclusion chromatography and static light scattering measurements demonstrated that FIS is predominately a stable dimer at the concentrations (1-10 microM monomer) and buffer cond...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2003.11.013

    authors: Topping TB,Hoch DA,Gloss LM

    更新日期:2004-01-23 00:00:00

  • Crystal and molecular structure of human annexin V after refinement. Implications for structure, membrane binding and ion channel formation of the annexin family of proteins.

    abstract::Two crystal forms (P6(3) and R3) of human annexin V have been crystallographically refined at 2.3 A and 2.0 A resolution to R-values of 0.184 and 0.174, respectively, applying very tight stereochemical restraints with deviations from ideal geometry of 0.01 A and 2 degrees. The three independent molecules (2 in P6(3), ...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/0022-2836(92)90984-r

    authors: Huber R,Berendes R,Burger A,Schneider M,Karshikov A,Luecke H,Römisch J,Paques E

    更新日期:1992-02-05 00:00:00

  • Conserved C-terminal region of global repressor KorA of broad-host-range plasmid RK2 is required for co-operativity between KorA and a second RK2 global regulator, KorB.

    abstract::KorA and KorB proteins of IncP1 plasmid RK2 are encoded in the central control region (ccr) of the plasmid and act as global regulators of plasmid genes for replication, transfer and stable inheritance. KorA represses seven promoters on RK2, by binding to a defined operator site, OA, which always occurs in promoter re...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1006/jmbi.1999.2761

    authors: Kostelidou K,Jones AC,Thomas CM

    更新日期:1999-06-04 00:00:00

  • INT131: a selective modulator of PPAR gamma.

    abstract::The nuclear hormone receptor peroxisome proliferator-activated receptor gamma (PPAR gamma; NR1C3) plays a central role in adipogenesis and is the molecular target of the thiazolidinedione class of antidiabetic drugs. To overcome the well-known shortcomings of thiazolidinediones, we have identified INT131 (formerly T13...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2009.01.025

    authors: Motani A,Wang Z,Weiszmann J,McGee LR,Lee G,Liu Q,Staunton J,Fang Z,Fuentes H,Lindstrom M,Liu J,Biermann DH,Jaen J,Walker NP,Learned RM,Chen JL,Li Y

    更新日期:2009-03-13 00:00:00

  • Local and transmitted conformational changes on complexation of an anti-sweetener Fab.

    abstract::Crystal structures of an Fab (NC6.8) from a murine IgG2b(kappa) antibody and its complex with a sweet-tasting, N-,N'-,N"-trisubstituted guanidine compound (NC174) have been determined by X-ray analysis. Both crystal forms are produced by a microseeding technique in polyethylene glycol (PEG) 8000 but the habits and spa...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1006/jmbi.1994.1133

    authors: Guddat LW,Shan L,Anchin JM,Linthicum DS,Edmundson AB

    更新日期:1994-02-11 00:00:00

  • Inter-domain motions of the N-domain of the KdpFABC complex, a P-type ATPase, are not driven by ATP-induced conformational changes.

    abstract::P-type ATPases are involved in the active transport of ions across biological membranes. The KdpFABC complex (P-type ATPase) of Escherichia coli is a high-affinity K+ uptake system that operates only when the cell experiences osmotic stress or K+ limitation. Here, we present the solution structure of the nucleotide bi...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2004.07.060

    authors: Haupt M,Bramkamp M,Coles M,Altendorf K,Kessler H

    更新日期:2004-10-01 00:00:00

  • Error rate and specificity of human and murine DNA polymerase eta.

    abstract::We describe here the error specificity of mammalian DNA polymerase eta (pol eta), an enzyme that performs translesion DNA synthesis and may participate in somatic hypermutation of immunoglobulin genes. Both mouse and human pol eta lack intrinsic proofreading exonuclease activity and both copy undamaged DNA inaccuratel...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1006/jmbi.2001.4937

    authors: Matsuda T,Bebenek K,Masutani C,Rogozin IB,Hanaoka F,Kunkel TA

    更新日期:2001-09-14 00:00:00

  • Mechanism of codon recognition by transfer RNA and codon-induced tRNA association.

    abstract::The steps of UUC recognition by tRNAPhe were analysed by temperature-jump measurements. At ion concentrations close to physiological conditions we found three relaxation processes, which we assigned to (1) formation of codon-anticodon complexes, (2) a conformational change of the anticodon loop coupled with Mg2+ bindi...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/0022-2836(84)90085-8

    authors: Labuda D,Striker G,Porschke D

    更新日期:1984-04-25 00:00:00

  • Monomer/dimer ratios of replication protein modulate the DNA strand-opening in a replication origin.

    abstract::DNA opening is an essential step in the initiation of replication via the Cairns mode of replication. The opening reaction was investigated in a gamma ori system by using hyperactive variants of plasmid R6K-encoded initiator protein, pi. Reactivity to KMnO4 (indicative of opening) within gamma ori DNA occurred in both...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1006/jmbi.2000.4426

    authors: Krüger R,Konieczny I,Filutowicz M

    更新日期:2001-03-09 00:00:00

  • The structure of Antirrhinum centroradialis protein (CEN) suggests a role as a kinase regulator.

    abstract::Expression of the plant protein centroradialis (CEN) leads to a morphological switch between shoot growth and the development of flower structures (inflorescence). We have determined the crystal structure of Antirrhinum CEN to 1.9 A resolution. This structure confirms the CEN proteins as a subset of the family of phos...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1006/jmbi.2000.3619

    authors: Banfield MJ,Brady RL

    更新日期:2000-04-14 00:00:00

  • The crystal structure of ZapA and its modulation of FtsZ polymerisation.

    abstract::FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. The widely conserved ZapA has been shown to interact with FtsZ, to drive its polymerisation and to promote FtsZ filament bundling thereby contributing to the spati...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2004.05.031

    authors: Low HH,Moncrieffe MC,Löwe J

    更新日期:2004-08-13 00:00:00

  • Secondary structure and temperature-induced unfolding and refolding of ribonuclease T1 in aqueous solution. A Fourier transform infrared spectroscopic study.

    abstract::The secondary structure of ribonuclease T1 (RNase T1) in aqueous solution and its temperature-induced structural changes have been investigated by Fourier-transform infrared (FT-IR) spectroscopy. 13 to 14% alpha-helix and 32 to 33% beta-sheet were estimated from the resolution-enhanced FT-IR spectra, in agreement with...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1006/jmbi.1993.1442

    authors: Fabian H,Schultz C,Naumann D,Landt O,Hahn U,Saenger W

    更新日期:1993-08-05 00:00:00

  • RecA protein assisted selection reveals a low fidelity of recognition of homology in a duplex DNA by an oligonucleotide.

    abstract::We have developed an in vitro selection procedure to elucidate the specificity of RecA assisted oligonucleotide recognition of double stranded DNA. The procedure was based on formation of a synaptic complex between an oligonucleotide-RecA filament and a supercoiled plasmid bearing a homologous partially degenerate reg...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1006/jmbi.1997.1164

    authors: Malkov VA,Sastry L,Camerini-Otero RD

    更新日期:1997-08-15 00:00:00

  • Repacking the Core of T4 lysozyme by automated design.

    abstract::Automated protein redesign, as implemented in the program ORBIT, was used to redesign the core of phage T4 lysozyme. A total of 26 buried or partially buried sites in the C-terminal domain were allowed to vary both their sequence and side-chain conformation while the backbone and non-selected side-chains remained fixe...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/s0022-2836(03)00856-8

    authors: Mooers BH,Datta D,Baase WA,Zollars ES,Mayo SL,Matthews BW

    更新日期:2003-09-19 00:00:00

  • Segmental flexibility and head-head interaction in scallop myosin. A study using saturation transfer electron paramagnetic resonance spectroscopy.

    abstract::Saturation transfer electron paramagnetic resonance spectroscopy was used to investigate the rotational motion of the head domains of native and desensitized scallop myosin and its proteolytic subfragments. Scallop myosin was spin-labelled with 4-(2-iodoacetamido)-2,2,6,6-tetramethylpiperidinooxyl, which reacted with ...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/0022-2836(83)90090-6

    authors: Wells C,Bagshaw CR

    更新日期:1983-02-15 00:00:00

  • Function of His185 in Aquifex aeolicus 3-deoxy-D-manno-octulosonate 8-phosphate synthase.

    abstract::Aquifex aeolicus 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8PS) catalyzes the condensation of arabinose 5-phosphate (A5P) and phosphoenolpyruvate (PEP) by favoring the activation of a water molecule coordinated to the active-site metal ion. Cys11, His185, Glu222 and Asp233 are the other metal ligands. Wild...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/s0022-2836(02)01096-3

    authors: Wang J,Duewel HS,Stuckey JA,Woodard RW,Gatti DL

    更新日期:2002-11-22 00:00:00

  • The structure of an RNA "kissing" hairpin complex of the HIV TAR hairpin loop and its complement.

    abstract::We have used nuclear magnetic resonance (NMR) to obtain the structure of an RNA "kissing" hairpin complex formed between the HIV-2 TAR hairpin loop and a hairpin with a complementary loop sequence. Kissing hairpins are important in natural antisense reactions; their complex is a specific target for protein binding. Th...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1006/jmbi.1997.1021

    authors: Chang KY,Tinoco I Jr

    更新日期:1997-05-30 00:00:00