Structure of pyrrolysyl-tRNA synthetase, an archaeal enzyme for genetic code innovation.

Abstract:

:Pyrrolysine (Pyl), the 22nd natural amino acid and genetically encoded by UAG, becomes attached to its cognate tRNA by pyrrolysyl-tRNA synthetase (PylRS). We have determined three crystal structures of the Methanosarcina mazei PylRS complexed with either AMP-PNP, Pyl-AMP plus pyrophosphate, or the Pyl analogue N-epsilon-[(cylopentyloxy)carbonyl]-L-lysine plus ATP. The structures reveal that PylRS utilizes a deep hydrophobic pocket for recognition of the Pyl side chain. A comparison of these structures with previously determined class II tRNA synthetase complexes illustrates that different substrate specificities derive from changes in a small number of residues that form the substrate side-chain-binding pocket. The knowledge of these structures allowed the placement of PylRS in the aminoacyl-tRNA synthetase (aaRS) tree as the last known synthetase that evolved for genetic code expansion, as well as the finding that Pyl arose before the last universal common ancestral state. The PylRS structure provides an excellent framework for designing new aaRSs with altered amino acid specificity.

authors

Kavran JM,Gundllapalli S,O'Donoghue P,Englert M,Söll D,Steitz TA

doi

10.1073/pnas.0704769104

subject

Has Abstract

pub_date

2007-07-03 00:00:00

pages

11268-73

issue

27

eissn

0027-8424

issn

1091-6490

pii

0704769104

journal_volume

104

pub_type

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