Single-gene detection and karyotyping using small-target fluorescence in situ hybridization on maize somatic chromosomes.

Abstract:

:Combined with a system for identifying each of the chromosomes in a genome, visualizing the location of individual genetic loci by fluorescence in situ hybridization (FISH) would aid in assembling physical and genetic maps. Previously, large genomic clones have been successfully used as FISH probes onto somatic chromosomes but this approach is complicated in species with abundant repetitive elements. In this study, repeat-free portions of sequences that were anchored to particular chromosomes including genes, gene clusters, large cDNAs, and portions of BACs obtained from public databases were used to label the corresponding physical location using FISH. A collection of probes that includes at least one marker on each chromosome in the maize complement was assembled, allowing a small-target karyotyping system to be developed. This set provides the foundation onto which additional loci could be added to strengthen further the ability to perform chromosomal identification in maize and its relatives. The probes were demonstrated to produce signals in several wild relatives of maize, including Zea luxurians, Z. diploperennis, and Tripsacum dactyloides.

journal_name

Genetics

journal_title

Genetics

authors

Lamb JC,Danilova T,Bauer MJ,Meyer JM,Holland JJ,Jensen MD,Birchler JA

doi

10.1534/genetics.106.065573

subject

Has Abstract

pub_date

2007-03-01 00:00:00

pages

1047-58

issue

3

eissn

0016-6731

issn

1943-2631

pii

genetics.106.065573

journal_volume

175

pub_type

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