当前位置： SCI文献检索 > INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES期刊下所有文献 > PSSARD (2.0): a database server for making flexible queries relating amino acid sequences to main-chain secondary structure conformations for proteins of known three-dimensional structure and certain useful applications.

PSSARD (2.0): a database server for making flexible queries relating amino acid sequences to main-chain secondary structure conformations for proteins of known three-dimensional structure and certain useful applications.

Abstract：

:We have updated the Protein Sequence-Structure Analysis Relational Database (PSSARD) first published in the Int. J. Biol. Macromol. 36 (2005) 259-262 corresponding to 1573 representative protein chains selected from the Protein Data Bank (PDB). In this, the updated and revised PSSARD (Version 2.0), we have included all proteins in the Protein Data Bank available at the time of developing this database including the NMR PDB entries. The current database corresponds to 22,752 XRAY PDB entries and 3977 NMR PDB entries and is separated accordingly in order to facilitate the appropriate database search. The representative protein chains can also be separately accessed within the current database. We have made a provision to combine more than one field to query the database and the results of any search can be used to carry out further nested searches using a combination of queries. We have provided hyperlinks to the individual PDB entries obtained as the result of any search in PSSARD in order to obtain additional details relevant to the protein structure. Certain applications useful to identify domains and structural motifs are discussed.

journal_name

Int J Biol Macromol

journal_title

International journal of biological macromolecules

authors

Sridhar S,Babu AV,Guruprasad K

doi

10.1016/j.ijbiomac.2006.10.006

subject

Has Abstract

pub_date

2007-06-01 00:00:00

pages

109-13

issue

1

eissn

0141-8130

issn

1879-0003

pii

S0141-8130(06)00307-2

journal_volume

41

pub_type

杂志文章

相关文献

INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES文献大全
  • Unusual reversible elastomeric gels from Nostoc commune.

    abstract：:Nostoc commune cyanobacteria grow in extreme conditions of desiccation and nutrient-poor soils. Their colonies form spherical gelatinous bodies are composed of a variety of polysaccharides that allow them to store water and nutrients. In this paper, we study this type of biological gel that shows characteristics of bo...

    journal_title：International journal of biological macromolecules

    pub_type： 杂志文章

    doi：10.1016/j.ijbiomac.2017.01.048

    authors： Rodriguez S,Gonzales KN,Romero EG,Troncoso OP,Torres FG

    更新日期：2017-04-01 00:00:00

  • Circular dichroism of the non-enzymatic browning products of poly-L-lysine and albumin.

    abstract：:Poly-L-lysine (PLL) and bovine serum albumin were used as models in the investigation of non-enzymatic glycation and browning reaction by circular dichroism measurements. Different sugars (glucose, glucose-6-P and ribose) induced different extents of reaction and produced different chromophores that absorbed light in ...

    journal_title：International journal of biological macromolecules

    pub_type： 杂志文章

    doi：10.1016/0141-8130(90)90009-y

    authors： Liang JN

    更新日期：1990-08-01 00:00:00

  • Physical and mechanical properties of gelatin-CMC composite films under the influence of electrostatic interactions.

    abstract：:The objective of current study was to examine the electrostatic interactions between gelatin and carboxymethyl cellulose (CMC) as a function of pH and mixing ratio (MR) and to observe how the physical and mechanical properties of gelatin-CMC composite films are affected by these interactions. The interaction between b...

    journal_title：International journal of biological macromolecules

    pub_type： 杂志文章

    doi：10.1016/j.ijbiomac.2018.03.079

    authors： Esteghlal S,Niakousari M,Hosseini SMH

    更新日期：2018-07-15 00:00:00

  • Enrichment of cellulose acetate nanofibre assemblies for therapeutic delivery of l-tryptophan.

    abstract：:The essential amino acid l-tryptophan is naturally present in the body, and is also available as a water soluble dietary supplement. The feasibility of preparing enriched cellulose acetate (CA)-based fibres as a vehicle for therapeutic delivery of such biomolecules was investigated. A new ternary solvent system consis...

    journal_title：International journal of biological macromolecules

    pub_type： 杂志文章

    doi：10.1016/j.ijbiomac.2017.11.124

    authors： Ghorani B,Goswami P,Blackburn RS,Russell SJ

    更新日期：2018-03-01 00:00:00

  • Optimization of whey protein isolate-quince seed mucilage complex coacervation.

    abstract：:In this study, the complex coacervation of whey protein isolate (WPI) and quince seed mucilage (QSM) was studied as a function of pH (7.0-2.0), biopolymers concentration (0.05, 0.1 and 0.5%) and WPI:QSM ratio (10:90 to 90:10), according to protolytic titration, electrical conductivity (EC) and turbidity analyses. The ...

    journal_title：International journal of biological macromolecules

    pub_type： 杂志文章

    doi：10.1016/j.ijbiomac.2019.03.026

    authors： Ghadermazi R,Khosrowshahi Asl A,Tamjidi F

    更新日期：2019-06-15 00:00:00

  • Antioxidant and anti-aging activities of polysaccharides from Cordyceps cicadae.

    abstract：:Cordyceps cicadae is a traditional Chinese medicine with high nutritional value and biological activities. Previously, we reported on the antioxidant activity associated with the polysaccharides from Cordyceps cicadae (CP). To further explore which of the fraction of CP had the greatest potency, in here, the in vitro ...

    journal_title：International journal of biological macromolecules

    pub_type： 杂志文章

    doi：10.1016/j.ijbiomac.2020.04.163

    authors： Zhu Y,Yu X,Ge Q,Li J,Wang D,Wei Y,Ouyang Z

    更新日期：2020-08-15 00:00:00

  • Lactose-crosslinked fish gelatin-based porous scaffolds embedded with tetrahydrocurcumin for cartilage regeneration.

    abstract：:Tetrahydrocurcumin (THC) is one of the major colourless metabolites of curcumin and shows even greater pharmacological and physiological benefits. The aim of this work was the manufacturing of porous scaffolds as a carrier of THC under physiological conditions. Fish-derived gelatin scaffolds were prepared by freeze-dr...

    journal_title：International journal of biological macromolecules

    pub_type： 杂志文章

    doi：10.1016/j.ijbiomac.2018.05.154

    authors： Etxabide A,Ribeiro RDC,Guerrero P,Ferreira AM,Stafford GP,Dalgarno K,de la Caba K,Gentile P

    更新日期：2018-10-01 00:00:00

  • Amphiphilic graft copolymeric micelle using dextrin and poly (N-vinyl caprolactam) via RAFT polymerization: Development and application.

    abstract：:Dextrin and poly (N-vinyl caprolactam) based amphiphilic graft copolymer has recently been developed using RAFT polymerization. The prepared graft copolymer has been characterized in details using FTIR and 1H NMR spectral analyses, GPC, TGA, FESEM, TEM and DLS analyses. GPC analysis results indicate that the polymeriz...

    journal_title：International journal of biological macromolecules

    pub_type： 杂志文章

    doi：10.1016/j.ijbiomac.2018.07.198

    authors： Pal A,Sarkar AN,Karmakar PD,Pal S

    更新日期：2018-11-01 00:00:00

  • Development of a novel pH sensitive silane crosslinked injectable hydrogel for controlled release of neomycin sulfate.

    abstract：:Silane crosslinked biopolymer based novel pH-responsive hydrogels were fabricated by blending the cationic (chitosan) and anionic (alginate) polymers with poly(vinyl alcohol). Tetraethoxysilane (TEOS) was used, as a crosslinker in different amounts due to its nonhazardous nature, to study its impact on physical and ch...

    journal_title：International journal of biological macromolecules

    pub_type： 杂志文章

    doi：10.1016/j.ijbiomac.2017.01.014

    authors： Jabeen S,Islam A,Ghaffar A,Gull N,Hameed A,Bashir A,Jamil T,Hussain T

    更新日期：2017-04-01 00:00:00

  • Heteroprotein complex coacervates of ovalbumin and lysozyme: Formation and thermodynamic characterization.

    abstract：:The formation of heteroprotein coacervates obtained by the interaction of ovalbumin (Ova) and lysozyme (Lys) was investigated using turbidimetric analysis and the zeta potential at different protein ratios, pH values and concentrations of NaCl. The complexes were formed over a wide pH range with a 1:1 (Ova:Lys) ratio ...

    journal_title：International journal of biological macromolecules

    pub_type： 杂志文章

    doi：10.1016/j.ijbiomac.2017.08.132

    authors： Santos MB,Costa ARD,Garcia-Rojas EE

    更新日期：2018-01-01 00:00:00

  • Role of seaweed laminaran from Saccharina longicruris on matrix deposition during dermal tissue-engineered production.

    abstract：:Our laboratory has developed a technique to reconstruct in vitro tissue from human cells using the self-assembly tissue-engineering method, which utilizes the ability of fibroblasts to deposit the matrix they secrete. The time necessary for tissue construction, several weeks, is a drawback for many clinical uses. We h...

    journal_title：International journal of biological macromolecules

    pub_type： 杂志文章

    doi：10.1016/j.ijbiomac.2015.01.017

    authors： Ayoub A,Pereira JM,Rioux LE,Turgeon SL,Beaulieu M,Moulin VJ

    更新日期：2015-04-01 00:00:00

  • Anti-Parkinsonian L-Dopa can also act as anti-systemic amyloidosis-A mechanistic exploration.

    abstract：:In spite of the fact that amyloid related neurodegenerative illnesses and non-neuropathic systemic amyloidosis have allured the research endeavors, as no cure has been announced yet apart from symptomatic treatment. Therapeutic agents which can reduce or disaggregate those toxic oligomers and fibrillar species have be...

    journal_title：International journal of biological macromolecules

    pub_type： 杂志文章

    doi：10.1016/j.ijbiomac.2017.03.028

    authors： Nusrat S,Zaidi N,Siddiqi MK,Zaman M,Siddique IA,Ajmal MR,Abdelhameed AS,Khan RH

    更新日期：2017-06-01 00:00:00

  • Purification and neuroprotective effects of polysaccharides from Opuntia Milpa Alta in cultured cortical neurons.

    abstract：:Opuntia is a traditional plant from China with medicinal applications. In this experiment, polysaccharides from Opuntia Milpa Alta (MAPs) were analyzed using gas chromatograph-mass spectrometer (GC-MS) method and result showed that MAPs contained mannose (6.37%), rhamnose (14.94%), xylose (1.99%), arabinose (24.07%), ...

    journal_title：International journal of biological macromolecules

    pub_type： 杂志文章

    doi：10.1016/j.ijbiomac.2011.06.031

    authors： Chen Y,Zhao B,Huang X,Zhan J,Zhao Y,Zhou M,Guo L

    更新日期：2011-11-01 00:00:00

  • Graphene oxide derivatives with variable alkyl chain length and terminal functional groups as supports for stabilization of cytochrome c.

    abstract：:In this study we report the ability of reduced and non-reduced graphene oxide-based nanomaterials (GONs), modified with variable alkyl chain length and terminal functional groups, to act as effective scaffolds for the immobilization of cytochrome c (cyt c) using different immobilization procedures. The GONs/cyt c conj...

    journal_title：International journal of biological macromolecules

    pub_type： 杂志文章

    doi：10.1016/j.ijbiomac.2015.12.023

    authors： Patila M,Pavlidis IV,Kouloumpis A,Dimos K,Spyrou K,Katapodis P,Gournis D,Stamatis H

    更新日期：2016-03-01 00:00:00

  • Green synthesis of biopolymer-silver nanoparticle nanocomposite: an optical sensor for ammonia detection.

    abstract：:Biopolymer used for the production of nanoparticles (NPs) has attracted increasing attention. In the presence article we use aqueous solution of polysaccharide Cyamopsis tetragonaloba commonly known as guar gum (GG), from plants. GG acts as reductive preparation of silver nanoparticles which are found to be <10 nm in ...

    journal_title：International journal of biological macromolecules

    pub_type： 杂志文章

    doi：10.1016/j.ijbiomac.2012.06.033

    authors： Pandey S,Goswami GK,Nanda KK

    更新日期：2012-11-01 00:00:00

  • Low molecular weight chitosan nanoparticles for CpG oligodeoxynucleotides delivery: Impact of molecular weight, degree of deacetylation, and mannosylation on intracellular uptake and cytokine induction.

    abstract：:Although synthetic CpG oligodeoxynucleotides (ODNs) have shown substantial potential as immunotherapeutic agents, their effective intracellular delivery remains challenging. In this work, nanoparticles prepared from low-molecular weight (LMW) chitosans were investigated as CpG ODN delivery systems. Chitosan samples wi...

    journal_title：International journal of biological macromolecules

    pub_type： 杂志文章

    doi：10.1016/j.ijbiomac.2020.05.048

    authors： Babii O,Wang Z,Liu G,Martinez EC,van Drunen Littel-van den Hurk S,Chen L

    更新日期：2020-09-15 00:00:00

  • Molecular characterization, constitutive expression and GTP binding mechanism of Cirrhinus mrigala (Hamilton, 1822) Myxovirus resistance (Mx) protein.

    abstract：:Myxovirus resistance (Mx) proteins represents the subclass of the dynamin superfamily of large Guanosine triphosphates (GTPases), play esential role in intracellular vesicle trafficking, endocytosis, organelle homeostasis and mitochondria distribution. These proteins are key players of the vertebrate immune system, in...

    journal_title：International journal of biological macromolecules

    pub_type： 杂志文章

    doi：10.1016/j.ijbiomac.2019.06.161

    authors： Roy P,Rout AK,Maharana J,Sahoo DR,Panda SP,Pal A,Nayak KK,Behera BK,Das BK

    更新日期：2019-09-01 00:00:00

  • A mechanistic investigation on methotrexate-loaded chitosan-based hydrogel nanoparticles intended for CNS drug delivery: Trojan horse effect or not?

    abstract：:Chitosan-based hydrogel nanoparticles provide a higher brain concentration of methotrexate (MTX) following IV administration in comparison with the drug's simple solution. The present study investigates the mechanism of this phenomenon, focusing on the possible role of P-gp. A previously developed MTX containing chito...

    journal_title：International journal of biological macromolecules

    pub_type： 杂志文章

    doi：10.1016/j.ijbiomac.2018.12.093

    authors： Pourtalebi Jahromi L,Moghaddam Panah F,Azadi A,Ashrafi H

    更新日期：2019-03-15 00:00:00

  • Effects of Glycyrrhiza glabra polysaccharides on immune and antioxidant activities in high-fat mice.

    abstract：:The purpose of this study was to investigate the immune and antioxidant activities of Glycyrrhiza glabra polysaccharides (GGP) in rats fed high-fat diet. The experiment was performed on four groups of growing Kunming mice. The results of the experiment showed a statistically significant decrease in serum antioxidant e...

    journal_title：International journal of biological macromolecules

    pub_type： 杂志文章

    doi：10.1016/j.ijbiomac.2009.04.001

    authors： Hong YK,Wu HT,Ma T,Liu WJ,He XJ

    更新日期：2009-07-01 00:00:00

  • Electrospun pectin/modified copper-based metal-organic framework (MOF) nanofibers as a drug delivery system.

    abstract：:Pectin has been regarded as a drug carrier accelerating the healing process due to its bioactivities, abundance and lower cost of resources. However, a big challenge related to its practical application is its poor mechanical strength. In this study the modified Cu-based MOF containing Folic acid was synthesized and i...

    journal_title：International journal of biological macromolecules

    pub_type： 杂志文章

    doi：10.1016/j.ijbiomac.2021.01.058

    authors： Zirak Hassan Kiadeh S,Ghaee A,Farokhi M,Nourmohammadi J,Bahi A,Ko FK

    更新日期：2021-01-12 00:00:00

  • Miniature crystal models of cellulose polymorphs and other carbohydrates.

    abstract：:Miniature crystal models of cellulose and other carbohydrates were evaluated with the molecular mechanics program MM3. The models consisted of groups of 24 to 32 monosaccharide residues, with the models of mono- and disaccharides based on well-established, single-crystal work. Structures of the cellulose forms and cel...

    journal_title：International journal of biological macromolecules

    pub_type： 杂志文章

    doi：10.1016/s0141-8130(05)80085-6

    authors： French AD,Miller DP,Aabloo A

    更新日期：1993-02-01 00:00:00

  • Structural features and in vivo antitussive activity of the water extracted polymer from Glycyrrhiza glabra.

    abstract：:Antitussive drugs are amongst the most widely used medications worldwide; however no new class of drugs has been introduced into the market for many years. Herein, we have analyzed the water-extracted polymeric fraction (WE) of Glycyrrhiza glabra. This arabinogalactan protein enriched fraction, ≥ 85% of which gets pre...

    journal_title：International journal of biological macromolecules

    pub_type： 杂志文章

    doi：10.1016/j.ijbiomac.2011.02.003

    authors： Saha S,Nosál'ová G,Ghosh D,Flešková D,Capek P,Ray B

    更新日期：2011-05-01 00:00:00

  • Near-perfect kinetic resolution of racemic p-chlorostyrene oxide by SlEH1, a novel epoxide hydrolase from Solanum lycopersicum with extremely high enantioselectivity.

    abstract：:An open reading frame of sleh1, a gene encoding for a novel epoxide hydrolase from Solanum lycopersicum (SlEH1), was amplified by RT-PCR and expressed in E. coli BL21(DE3). The substrate spectrum assay showed that E. coli/sleh1 had EH activities towards all tested substrates except for racemic (rac-) 5a, and the highe...

    journal_title：International journal of biological macromolecules

    pub_type： 杂志文章

    doi：10.1016/j.ijbiomac.2019.10.091

    authors： Hu BC,Hu D,Li C,Xu XF,Wen Z,Wu MC

    更新日期：2020-03-15 00:00:00

  • Interfacial properties of ultrahigh methoxylated pectin.

    abstract：:The interfacial properties of ultrahigh methoxylated pectin (UHMP) prepared via esterification of citrus pectin (CP) were investigated. The intrinsic viscosity ([η]) of pectin was significantly decreased from 1211.5 mL/g to 294.9 mL/g as the degree of methylation (DM) increased from 63.18 ± 0.08% to 91.52 ± 0.11%. Sur...

    journal_title：International journal of biological macromolecules

    pub_type： 杂志文章

    doi：10.1016/j.ijbiomac.2020.02.264

    authors： Liu J,Tan J,Hua X,Jiang Z,Wang M,Yang R,Cao Y

    更新日期：2020-06-01 00:00:00

  • Isolation, structural characterization and bioactivities of polysaccharides and its derivatives from Auricularia-A review.

    abstract：:Auricularia mushrooms are known for their bioactive compounds, mostly polysaccharides, which have numerous biological activities, such as antioxidant, antitumor, immunomodulatory, hyperlipidemic, antidiabetic, anticoagulant and hepatoprotective effects. Over the past decades, there has been a consistent focus on the i...

    journal_title：International journal of biological macromolecules

    pub_type： 杂志文章,评审

    doi：10.1016/j.ijbiomac.2020.02.054

    authors： Miao J,Regenstein JM,Qiu J,Zhang J,Zhang X,Li H,Zhang H,Wang Z

    更新日期：2020-05-01 00:00:00

  • Biocatalytic strategies in the production of galacto-oligosaccharides and its global status.

    abstract：:Galactooligosaccharides (GOSs) are the non-digestible carbohydrates that are composed of 3-10 or longer molecules of galactose and the terminal glucose molecule. These are considered as prebiotics owing to their various health benefits, and therefore is the major focus of research. These are generally synthesized by t...

    journal_title：International journal of biological macromolecules

    pub_type： 杂志文章,评审

    doi：10.1016/j.ijbiomac.2018.01.062

    authors： Panesar PS,Kaur R,Singh RS,Kennedy JF

    更新日期：2018-05-01 00:00:00

  • Conformational change of lysozyme on the interaction with gene carrier polyethyleneimine.

    abstract：:Polyethyleneimine (PEI) has been considered as "golden standard" for polymeric gene delivery carriers, however also induces cytotoxicity. To reveal the molecular basis of PEI cytotoxicity, absorption, resonance Rayleigh scattering, fluorescence, circular dichroism and isothermal titration calorimetry were conducted to...

    journal_title：International journal of biological macromolecules

    pub_type： 杂志文章

    doi：10.1016/j.ijbiomac.2018.05.194

    authors： Wang F,Wang X,Zhang M,Huang A,Ma L

    更新日期：2018-10-01 00:00:00

  • Ca2+-induced stabilization of the nucleoside 2'- deoxyribosyltransferase from Lactobacillus hilgardii ZJS01: Characteristics and application in nucleosides synthesis.

    abstract：:A novel nucleoside 2'-deoxyribosyltransferase (LhNDT) from Lactobacillus hilgardii ZJS01 was cloned and expressed in Escherichia coli BL21 (DE3). The amino acid sequence of LhNDT displayed the highest identity of 26% to other reported NDTs. LhNDT was a monomer as revealed by gel filtration chromatography with or witho...

    journal_title：International journal of biological macromolecules

    pub_type： 杂志文章

    doi：10.1016/j.ijbiomac.2017.08.104

    authors： Zhang J,Zhou Y,Liu K,Chu J,Zhang Y,He B

    更新日期：2018-01-01 00:00:00

  • Structural characterisation and immunomodulatory activity of a neutral polysaccharide from Sambucus adnata Wall.

    abstract：:A neutral polysaccharide, SPW-2, was purified from the leaves of Sambucus adnata Wall. using water extraction and alcohol precipitation, Sevage deproteination, ion exchange chromatography and gel filtration chromatography. This molecule had an average molecular weight of 7040 Da and was composed of arabinose, xylose, ...

    journal_title：International journal of biological macromolecules

    pub_type： 杂志文章

    doi：10.1016/j.ijbiomac.2019.11.021

    authors： Yuan L,Zhong ZC,Liu Y

    更新日期：2020-07-01 00:00:00

  • Enhancement of lignin removal from pre-hydrolysis liquor for saccharide recovery via horseradish peroxidase treatment in the presence of Ca2.

    abstract：:The removal of lignin is important to the recovery of saccharides from the pre-hydrolysis liquor (PHL) in kraft-based dissolved pulp production. A one-step process for lignin removal from PHL via treatment with horseradish peroxidase (HRP) in the presence of Ca2+ was proposed, and its principle was studied. The result...

    journal_title：International journal of biological macromolecules

    pub_type： 杂志文章

    doi：10.1016/j.ijbiomac.2020.09.088

    authors： Wang F,Liu Q,Chen J,Li Z,Fu Y,Qin M

    更新日期：2020-11-15 00:00:00