Centromere locations and associated chromosome rearrangements in Arabidopsis lyrata and A. thaliana.

Abstract:

:We analyzed linkage and chromosomal positions of genes in A. lyrata ssp. petraea that are located near the centromere (CEN) regions of A. thaliana, using at least two genes from the short and long arms of each chromosome. In our map, genes from all 10 A. thaliana chromosome arms are also tightly linked in A. lyrata. Genes from the regions on the two sides of CEN5 have distant map localizations in A. lyrata (genes on the A. thaliana short-arm genes are on linkage group AL6, and long-arm genes are on AL7), but genes from the other four A. thaliana centromere regions remain closely linked in A. lyrata. The observation of complete linkage between short- and long-arm centromere genes, but not between genes in other genome regions that are separated by similar physical distances, suggests that crossing-over frequencies near the A. lyrata ssp. petraea centromere regions are low, as in A. thaliana. Thus, the centromere positions appear to be conserved between A. thaliana and A. lyrata, even though three centromeres have been lost in A. thaliana, and the core satellite sequences in the two species are very different. We can now definitively identify the three centromeres that were eliminated in the fusions that formed the A. thaliana chromosomes. However, we cannot tell whether genes were lost along with these centromeres, because such genes are absent from the A. thaliana genome, which is the sole source of markers for our mapping.

journal_name

Genetics

journal_title

Genetics

authors

Kawabe A,Hansson B,Hagenblad J,Forrest A,Charlesworth D

doi

10.1534/genetics.106.057182

subject

Has Abstract

pub_date

2006-07-01 00:00:00

pages

1613-9

issue

3

eissn

0016-6731

issn

1943-2631

pii

genetics.106.057182

journal_volume

173

pub_type

杂志文章

相关文献

GENETICS文献大全
  • Genetic interactions of the Aspergillus nidulans atmAATM homolog with different components of the DNA damage response pathway.

    abstract::Ataxia telangiectasia mutated (ATM) is a phosphatidyl-3-kinase-related protein kinase that functions as a central regulator of the DNA damage response in eukaryotic cells. In humans, mutations in ATM cause the devastating neurodegenerative disease ataxia telangiectasia. Previously, we characterized the homolog of ATM ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.107.080879

    authors: Malavazi I,Lima JF,de Castro PA,Savoldi M,de Souza Goldman MH,Goldman GH

    更新日期:2008-02-01 00:00:00

  • The jaw of the worm: GTPase-activating protein EAT-17 regulates grinder formation in Caenorhabditis elegans.

    abstract::Constitutive transport of cellular materials is essential for cell survival. Although multiple small GTPase Rab proteins are required for the process, few regulators of Rabs are known. Here we report that EAT-17, a novel GTPase-activating protein (GAP), regulates RAB-6.2 function in grinder formation in Caenorhabditis...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.113.152538

    authors: Straud S,Lee I,Song B,Avery L,You YJ

    更新日期:2013-09-01 00:00:00

  • A novel nonnull ZIP1 allele triggers meiotic arrest with synapsed chromosomes in Saccharomyces cerevisiae.

    abstract::During meiotic prophase, assembly of the synaptonemal complex (SC) brings homologous chromosomes into close apposition along their lengths. The Zip1 protein is a major building block of the SC in Saccharomyces cerevisiae. In the absence of Zip1, SC fails to form, cells arrest or delay in meiotic prophase (depending on...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.107.071100

    authors: Mitra N,Roeder GS

    更新日期:2007-06-01 00:00:00

  • Regions of lower crossing over harbor more rare variants in African populations of Drosophila melanogaster.

    abstract::A correlation between diversity levels and rates of recombination is predicted both by models of positive selection, such as hitchhiking associated with the rapid fixation of advantageous mutations, and by models of purifying selection against strongly deleterious mutations (commonly referred to as "background selecti...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Andolfatto P,Przeworski M

    更新日期:2001-06-01 00:00:00

  • Sex-linked inheritance in macaque monkeys: implications for effective population size and dispersal to Sulawesi.

    abstract::Sex-specific differences in dispersal, survival, reproductive success, and natural selection differentially affect the effective population size (N(e)) of genomic regions with different modes of inheritance such as sex chromosomes and mitochondrial DNA. In papionin monkeys (macaques, baboons, geladas, mandrills, drill...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.110.116228

    authors: Evans BJ,Pin L,Melnick DJ,Wright SI

    更新日期:2010-07-01 00:00:00

  • Frequency-dependent selection and the maintenance of genetic variation: exploring the parameter space of the multiallelic pairwise interaction model.

    abstract::When individuals' fitnesses depend on the genetic composition of the population in which they are found, selection is then frequency dependent. Frequency-dependent selection (FDS) is often invoked as a heuristic explanation for the maintenance of large numbers of alleles at a locus. The pairwise interaction model is a...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.107.073072

    authors: Trotter MV,Spencer HG

    更新日期:2007-07-01 00:00:00

  • Molecular-genetic characterization of CMS-S restorer-of-fertility alleles identified in Mexican maize and teosinte.

    abstract::Restorer-of-fertility (Rf) alleles for S-type cytoplasmic male sterility (CMS-S) are prevalent in Mexican races of maize and teosinte. Forty-five Rf alleles from 26 races of maize and 6 Rf alleles from different accessions of teosinte were found to be homozygous viable, consistent with the hypothesis that they are nat...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.166.2.959

    authors: Gabay-Laughnan S,Chase CD,Ortega VM,Zhao L

    更新日期:2004-02-01 00:00:00

  • Mapping quantitative trait loci for milk production and health of dairy cattle in a large outbred pedigree.

    abstract::Quantitative trait loci (QTL) affecting milk production and health of dairy cattle were mapped in a very large Holstein granddaughter design. The analysis included 1794 sons of 14 sires and 206 genetic markers distributed across all 29 autosomes and flanking an estimated 2497 autosomal cM using Kosambi's mapping funct...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Zhang Q,Boichard D,Hoeschele I,Ernst C,Eggen A,Murkve B,Pfister-Genskow M,Witte LA,Grignola FE,Uimari P,Thaller G,Bishop MD

    更新日期:1998-08-01 00:00:00

  • Action of repeat-induced point mutation on both strands of a duplex and on tandem duplications of various sizes in Neurospora.

    abstract::In Neurospora crassa, DNA sequence duplications are detected and altered efficiently during the sexual cycle by a process known as RIP (repeat-induced point mutation). Affected sequences are subjected to multiple GC-to-AT mutations. To explore the pattern in which base changes are laid down by RIP we examined two sets...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Watters MK,Randall TA,Margolin BS,Selker EU,Stadler DR

    更新日期:1999-10-01 00:00:00

  • A new gene affecting the efficiency of mating-type interconversions in homothallic strains of Saccharomyces cerevisiae.

    abstract::Homothallic strains of Saccharomyes cerevisiae are able to switch efficiently from one mating genotype to another. From a single haploid spore arise both a and mating type cells, which then self-mate to produce a colony consisting almost exclusively of nonmating a/ diploid cells. We have isolated a mutant homothallic ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Haber JE,Garvik B

    更新日期:1977-09-01 00:00:00

  • Marker-dependent recombination in T4 bacteriophage. III. Structural prerequisites for marker discrimination.

    abstract::Distance- as well as marker-dependence of genetic recombination of bacteriophage T4 was studied in crosses between rIIB mutants with known base sequences. The notion of a "basic recombination," which is the recombination within distances shorter than hybrid DNA length in the absence of mismatch repair and any marker e...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Shcherbakov VP,Plugina LA

    更新日期:1991-08-01 00:00:00

  • De novo methylation of repeated sequences in Coprinus cinereus.

    abstract::We have examined the stability of duplicated DNA sequences in the sexual phase of the life cycle of the basidiomycete fungus, Coprinus cinereus. We observed premeiotic de novo methylation in haploid nuclei containing either a triplication, a tandem duplication, or an ectopic duplication. Methylation changes were not o...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Freedman T,Pukkila PJ

    更新日期:1993-10-01 00:00:00

  • Starvation-Induced Stress Response Is Critically Impacted by Ceramide Levels in Caenorhabditis elegans.

    abstract::Our understanding of the cellular mechanisms by which animals regulate their response to starvation is limited, despite the strong relevance of the problem to major human health issues. The L1 diapause of Caenorhabditis elegans, where first-stage larvae arrest in response to a food-less environment, is an excellent sy...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.116.194282

    authors: Cui M,Wang Y,Cavaleri J,Kelson T,Teng Y,Han M

    更新日期:2017-02-01 00:00:00

  • Patterning of the adult mandibulate mouthparts in the red flour beetle, Tribolium castaneum.

    abstract::Specialized insect mouthparts, such as those of Drosophila, are derived from an ancestral mandibulate state, but little is known about the developmental genetics of mandibulate mouthparts. Here, we study the metamorphic patterning of mandibulate mouthparts of the beetle Tribolium castaneum, using RNA interference to d...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.111.134296

    authors: Angelini DR,Smith FW,Aspiras AC,Kikuchi M,Jockusch EL

    更新日期:2012-02-01 00:00:00

  • Molecular analysis of multiple mutator-derived alleles of the bronze locus of maize.

    abstract::Very few mutations derived from Mutator maize lines have been studied at the molecular level. The variety of Mu elements that can induce mutations, the relative frequency of mutant induction by insertion of a given class of Mu elements or by a Mu-induced genomic rearrangement, a possible intragenic insertion site spec...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Brown WE,Robertson DS,Bennetzen JL

    更新日期:1989-06-01 00:00:00

  • Compensatory evolution in rifampin-resistant Escherichia coli.

    abstract::This study examines the intrinsic fitness burden associated with RNA polymerase (rpoB) mutations conferring rifampin resistance in Escherichia coli K12 (MG1655) and explores the nature of adaptation to the costs of resistance. Among 28 independent Rif(r) mutants, the per-generation fitness burden (in the absence of ri...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Reynolds MG

    更新日期:2000-12-01 00:00:00

  • An Evolutionary Perspective on Yeast Mating-Type Switching.

    abstract::Cell differentiation in yeast species is controlled by a reversible, programmed DNA-rearrangement process called mating-type switching. Switching is achieved by two functionally similar but structurally distinct processes in the budding yeast Saccharomyces cerevisiae and the fission yeast Schizosaccharomyces pombe In ...

    journal_title:Genetics

    pub_type: 杂志文章,评审

    doi:10.1534/genetics.117.202036

    authors: Hanson SJ,Wolfe KH

    更新日期:2017-05-01 00:00:00

  • The dynamics of transposable elements in structured populations.

    abstract::We analyzed the dynamics of transposable elements (TEs) according to Wright's island and continent-island models, assuming that selection tends to counter the deleterious effects of TEs. We showed that migration between host populations has no impact on either the existence or the stability of the TE copy number equil...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.104.032243

    authors: Deceliere G,Charles S,Biémont C

    更新日期:2005-01-01 00:00:00

  • Analysis of dominant mutations affecting muscle excitation in Caenorhabditis elegans.

    abstract::We examined mutations that disrupt muscle activation in Caenorhabditis elegans. Fifteen of 17 of these genes were identified previously and we describe new mutations in three of them. We also describe mutations in two new genes, exp-3 and exp-4. We assessed the degree of defect in pharyngeal, body-wall, egg-laying, an...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Reiner DJ,Weinshenker D,Thomas JH

    更新日期:1995-11-01 00:00:00

  • MDP1, a Saccharomyces cerevisiae gene involved in mitochondrial/cytoplasmic protein distribution, is identical to the ubiquitin-protein ligase gene RSP5.

    abstract::Alteration of the subcellular distribution of Mod5p-I, a tRNA modification enzyme, member of the sorting isozyme family, affects tRNA-mediated nonsense suppression. Altered suppression efficiency was used to identify MDP genes, which, when mutant, change the mitochondrial/cytosolic distribution of Mod5p-I,KR6. MDP2 is...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Zoladek T,Tobiasz A,Vaduva G,Boguta M,Martin NC,Hopper AK

    更新日期:1997-03-01 00:00:00

  • A Bayesian Approach to Inferring Rates of Selfing and Locus-Specific Mutation.

    abstract::We present a Bayesian method for characterizing the mating system of populations reproducing through a mixture of self-fertilization and random outcrossing. Our method uses patterns of genetic variation across the genome as a basis for inference about reproduction under pure hermaphroditism, gynodioecy, and a model de...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.115.179093

    authors: Redelings BD,Kumagai S,Tatarenkov A,Wang L,Sakai AK,Weller SG,Culley TM,Avise JC,Uyenoyama MK

    更新日期:2015-11-01 00:00:00

  • Mutations in the extra sex combs and Enhancer of Polycomb genes increase homologous recombination in somatic cells of Drosophila melanogaster.

    abstract::We found that heterozygous mutant alleles of E(Pc) and esc increased homologous recombination from an allelic template in somatic cells in a P-element-induced double-strand break repair assay. Flies heterozygous for mutant alleles of these genes showed increased genome stability and decreased levels of apoptosis in im...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.105.042473

    authors: Holmes AM,Weedmark KA,Gloor GB

    更新日期:2006-04-01 00:00:00

  • Dosage effects on gene expression in a maize ploidy series.

    abstract::Previous studies on gene expression in aneuploids revealed numerous trans-acting dosage effects. Segmental aneuploidy of each varied chromosomal region exhibited predominantly inverse effects on several target genes. Here, dosage regulation was examined in a maize (Zea mays L.) ploidy series where the complete genomic...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Guo M,Davis D,Birchler JA

    更新日期:1996-04-01 00:00:00

  • Variation in activities of amylase allozymes associated with chromosome inversions in Drosophila pseudoobscura, D. persimilis and D. miranda.

    abstract::Different electrophoretic alleles of amylase show associations with particular chromosome 3 inversions in D. pseudoobscura and D. persimilis. Relative adult amylase activities were compared in 37, 37 and 10 strains of D. pseudoobscura, D. persimilis and D. miranda, respectively. Strains carrying the same electrophoret...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Norman RA,Prakash S

    更新日期:1980-05-01 00:00:00

  • Defining specificity determinants of cGMP mediated gustatory sensory transduction in Caenorhabditis elegans.

    abstract::Cyclic guanosine monophosphate (cGMP) is a key secondary messenger used in signal transduction in various types of sensory neurons. The importance of cGMP in the ASE gustatory receptor neurons of the nematode Caenorhabditis elegans was deduced by the observation that multiple receptor-type guanylyl cyclases (rGCs), en...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.113.152660

    authors: Smith HK,Luo L,O'Halloran D,Guo D,Huang XY,Samuel AD,Hobert O

    更新日期:2013-08-01 00:00:00

  • Evolutionary conservation of the FLOWERING LOCUS C-mediated vernalization response: evidence from the sugar beet (Beta vulgaris).

    abstract::In many plant species, exposure to a prolonged period of cold during the winter promotes flowering in the spring, a process termed vernalization. In Arabidopsis thaliana, the vernalization requirement of winter-annual ecotypes is caused by the MADS-box gene FLOWERING LOCUS C (FLC), which is a repressor of flowering. D...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.106.069336

    authors: Reeves PA,He Y,Schmitz RJ,Amasino RM,Panella LW,Richards CM

    更新日期:2007-05-01 00:00:00

  • Some radiation effects on segregation in Drosophila.

    abstract::Translocation induced in the immature oocyte, in meiotic prophase, affects division I orientation and segregation, the usual result being that the two halves of translocations are directed to opposite poles. Since interchange is usually (if not exclusively) between chromatids, this is to be expected from the creation ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Parker DR,Williamson JH

    更新日期:1974-09-01 00:00:00

  • New Map Location of ilvO in ESCHERICHIA COLI.

    abstract::Mutations in ilvO, the operator site for operon A of the ilv region of E. coli K-12, are reported to cause a cis dominant derepression of the operon A gene products and to map between ilvC and ilvA. Studies reported here demonstrate that the F25 episome which does not carry the region between ilvC and ilvA but only il...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Cohen BM,Jones EW

    更新日期:1976-06-01 00:00:00

  • Pooling analysis of genetic data: the association of leptin receptor (LEPR) polymorphisms with variables related to human adiposity.

    abstract::Analysis of raw pooled data from distinct studies of a single question generates a single statistical conclusion with greater power and precision than conventional metaanalysis based on within-study estimates. However, conducting analyses with pooled genetic data, in particular, is a daunting task that raises importan...

    journal_title:Genetics

    pub_type: 杂志文章,meta分析

    doi:

    authors: Heo M,Leibel RL,Boyer BB,Chung WK,Koulu M,Karvonen MK,Pesonen U,Rissanen A,Laakso M,Uusitupa MI,Chagnon Y,Bouchard C,Donohoue PA,Burns TL,Shuldiner AR,Silver K,Andersen RE,Pedersen O,Echwald S,Sørensen TI,Behn P,

    更新日期:2001-11-01 00:00:00

  • The role of Gcr1p in the transcriptional activation of glycolytic genes in yeast Saccharomyces cerevisiae.

    abstract::To study the interdependence of Gcr1p and Rap1p, we prepared a series of synthetic regulatory sequences that contained various numbers and combinations of CT-boxes (Gcr1p-binding sites) and RPG-boxes (Rap1p-binding sites). The ability of the synthetic oligonucleotides to function as regulatory sequences was tested usi...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Uemura H,Koshio M,Inoue Y,Lopez MC,Baker HV

    更新日期:1997-10-01 00:00:00