Identifying repeat domains in large genomes.

Abstract:

:We present a graph-based method for the analysis of repeat families in a repeat library. We build a repeat domain graph that decomposes a repeat library into repeat domains, short subsequences shared by multiple repeat families, and reveals the mosaic structure of repeat families. Our method recovers documented mosaic repeat structures and suggests additional putative ones. Our method is useful for elucidating the evolutionary history of repeats and annotating de novo generated repeat libraries.

journal_name

Genome Biol

journal_title

Genome biology

authors

Zhi D,Raphael BJ,Price AL,Tang H,Pevzner PA

doi

10.1186/gb-2006-7-1-r7

keywords:

subject

Has Abstract

pub_date

2006-01-01 00:00:00

pages

R7

issue

1

eissn

1474-7596

issn

1474-760X

pii

gb-2006-7-1-r7

journal_volume

7

pub_type

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