Abstract:
:We present a graph-based method for the analysis of repeat families in a repeat library. We build a repeat domain graph that decomposes a repeat library into repeat domains, short subsequences shared by multiple repeat families, and reveals the mosaic structure of repeat families. Our method recovers documented mosaic repeat structures and suggests additional putative ones. Our method is useful for elucidating the evolutionary history of repeats and annotating de novo generated repeat libraries.
journal_name
Genome Bioljournal_title
Genome biologyauthors
Zhi D,Raphael BJ,Price AL,Tang H,Pevzner PAdoi
10.1186/gb-2006-7-1-r7keywords:
subject
Has Abstractpub_date
2006-01-01 00:00:00pages
R7issue
1eissn
1474-7596issn
1474-760Xpii
gb-2006-7-1-r7journal_volume
7pub_type
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