An auxin-driven polarized transport model for phyllotaxis.

Abstract:

:Recent studies show that plant organ positioning may be mediated by localized concentrations of the plant hormone auxin. Auxin patterning in the shoot apical meristem is in turn brought about by the subcellular polar distribution of the putative auxin efflux mediator, PIN1. However, the question of what signals determine PIN1 polarization and how this gives rise to regular patterns of auxin concentration remains unknown. Here we address these questions by using mathematical modeling combined with confocal imaging. We propose a model that is based on the assumption that auxin influences the polarization of its own efflux within the meristem epidermis. We show that such a model is sufficient to create regular spatial patterns of auxin concentration on systems with static and dynamic cellular connectivities, the latter governed by a mechanical model. We also optimize parameter values for the PIN1 dynamics by using a detailed auxin transport model, for which parameter values are taken from experimental estimates, together with a template consisting of cell and wall compartments as well as PIN1 concentrations quantitatively extracted from confocal data. The model shows how polarized transport can drive the formation of regular patterns.

authors

Jönsson H,Heisler MG,Shapiro BE,Meyerowitz EM,Mjolsness E

doi

10.1073/pnas.0509839103

keywords:

subject

Has Abstract

pub_date

2006-01-31 00:00:00

pages

1633-8

issue

5

eissn

0027-8424

issn

1091-6490

pii

0509839103

journal_volume

103

pub_type

杂志文章
  • Context shapes early diversity in abstract thought.

    abstract::Early abstract reasoning has typically been characterized by a "relational shift," in which children initially focus on object features but increasingly come to interpret similarity in terms of structured relations. An alternative possibility is that this shift reflects a learned bias, rather than a typical waypoint a...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1818365116

    authors: Carstensen A,Zhang J,Heyman GD,Fu G,Lee K,Walker CM

    更新日期:2019-07-09 00:00:00

  • Transcriptional repression of euchromatic genes by Drosophila heterochromatin protein 1 and histone modifiers.

    abstract::In Drosophila, heterochromatin protein 1 (HP1) suppresses the expression of euchromatic genes that are artificially translocated adjacent to heterochromatin by expanding heterochromatin structure into neighboring euchromatin. The purpose of this study was to determine whether HP1 functions as a transcriptional repress...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.211303598

    authors: Hwang KK,Eissenberg JC,Worman HJ

    更新日期:2001-09-25 00:00:00

  • Sensory domain contraction in histidine kinase CitA triggers transmembrane signaling in the membrane-bound sensor.

    abstract::Bacteria use membrane-integral sensor histidine kinases (HK) to perceive stimuli and transduce signals from the environment to the cytosol. Information on how the signal is transmitted across the membrane by HKs is still scarce. Combining both liquid- and solid-state NMR, we demonstrate that structural rearrangements ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1620286114

    authors: Salvi M,Schomburg B,Giller K,Graf S,Unden G,Becker S,Lange A,Griesinger C

    更新日期:2017-03-21 00:00:00

  • Thermodynamic basis of the enhanced specificity of structured DNA probes.

    abstract::Molecular beacons are DNA probes that form a stem-and-loop structure and possess an internally quenched fluorophore. When they bind to complementary nucleic acids, they undergo a conformational transition that switches on their fluorescence. These probes recognize their targets with higher specificity than probes that...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.96.11.6171

    authors: Bonnet G,Tyagi S,Libchaber A,Kramer FR

    更新日期:1999-05-25 00:00:00

  • Mutation of the zebrafish choroideremia gene encoding Rab escort protein 1 devastates hair cells.

    abstract::To identify genes important for hair-cell function, we conducted a mutagenic screen in zebrafish. Larvae from one mutant line, ru848, were unresponsive to acoustic stimuli and unable to balance. The mutation results in a 90% reduction in hair-cell number and partial retinal degeneration by 5 days postfertilization. We...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0308474100

    authors: Starr CJ,Kappler JA,Chan DK,Kollmar R,Hudspeth AJ

    更新日期:2004-02-24 00:00:00

  • Statistical methods for characterizing similarities and differences between semantic structures.

    abstract::This paper describes a variety of statistical methods for obtaining precise quantitative estimates of the similarities and differences in the structures of semantic domains in different languages. The methods include comparing mean correlations within and between groups, principal components analysis of interspeaker c...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.97.1.518

    authors: Romney AK,Moore CC,Batchelder WH,Hsia TL

    更新日期:2000-01-04 00:00:00

  • The primary structure of high density apolipoprotein-glutamine-I.

    abstract::The major protein constituent of human plasma high density lipoproteins has been isolated and its complete amino-acid sequence determined. The protein, designated apolipoprotein-glutamine-I by the presence of carboxyl-terminal glutamine, is a single polypeptide chain of 245 amino-acid residues, including three residue...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.71.9.3631

    authors: Baker HN,Delahunty T,Gotto AM Jr,Jackson RL

    更新日期:1974-09-01 00:00:00

  • The mammalian target of rapamycin regulates cholesterol biosynthetic gene expression and exhibits a rapamycin-resistant transcriptional profile.

    abstract::The mammalian target of rapamycin (mTOR) is a central regulator of cell growth and proliferation in response to growth factor and nutrient signaling. Consequently, this kinase is implicated in metabolic diseases including cancer and diabetes, so there is great interest in understanding the complete spectrum of mTOR-re...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1103746108

    authors: Wang BT,Ducker GS,Barczak AJ,Barbeau R,Erle DJ,Shokat KM

    更新日期:2011-09-13 00:00:00

  • Endonuclease activity associated with purified PM2 bacteriophages.

    abstract::An endonucleolytic activity is associated with purified PM(2) bacteriophages. It converts the double-stranded supercoiled PM(2) DNA mostly into the linear form that sediments as a homogenous peak in alkaline sucrose gradients. The same activity is found in intact or detergent-lysed phages. Optimal activity is observed...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.71.12.4965

    authors: Laval F

    更新日期:1974-12-01 00:00:00

  • Structure of the lambda att sites generated by int-dependent deletions.

    abstract::Bacteriophage lambda integrates into the chromosome of its Escherichia coli host by means of a site-specific recombination between a locus on the phage chromosome (phage att site) and a locus on the bacterial chromosome (bacterial att site). The nucleotide sequence of four lambda att sites altered in site-specific rec...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.75.11.5437

    authors: Hoess RH,Landy A

    更新日期:1978-11-01 00:00:00

  • Dorsoventral decoupling of Hox gene expression underpins the diversification of molluscs.

    abstract::In contrast to the Hox genes in arthropods and vertebrates, those in molluscs show diverse expression patterns with differences reported among lineages. Here, we investigate 2 phylogenetically distant molluscs, a gastropod and a polyplacophoran, and show that the Hox expression in both species can be divided into 2 ca...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1907328117

    authors: Huan P,Wang Q,Tan S,Liu B

    更新日期:2020-01-07 00:00:00

  • Electrochemical and homogeneous electron transfers to the Alzheimer amyloid-beta copper complex follow a preorganization mechanism.

    abstract::Deciphering the electron transfer reactivity characteristics of amyloid β-peptide copper complexes is an important task in connection with the role they are assumed to play in Alzheimer's disease. A systematic analysis of this question with the example of the amyloid β-peptide copper complex by means of its electroche...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1011315107

    authors: Balland V,Hureau C,Savéant JM

    更新日期:2010-10-05 00:00:00

  • Metal binding and folding properties of a minimalist Cys2His2 zinc finger peptide.

    abstract::A minimalist Cys2His2 zinc finger peptide, Lys-Tyr-Ala-Cys-Ala-Ala-Cys-Ala-Ala-Ala-Phe-Ala-Ala-Lys-Ala-Ala-Leu-Ala- Ala-His-Ala-Ala-Ala-His-Ala-Lys, has been synthesized. Metal binding studies using Co2+ as a probe indicated that this peptide forms a 1:1 peptide/metal complex with a dissociation constant comparable to...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.89.11.4796

    authors: Michael SF,Kilfoil VJ,Schmidt MH,Amann BT,Berg JM

    更新日期:1992-06-01 00:00:00

  • On the interactions of lipids and proteins in the red blood cell membrane.

    abstract::The effects of temperature and of the action of a purified phospholipase C enzyme preparation on human red blood cell membranes has been investigated by chemical analyses, circular dichroism, and proton magnetic resonance measurements. The results indicate that a substantial fraction of the phospholipids and the prote...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.65.3.721

    authors: Glaser M,Simpkins H,Singer SJ,Sheetz M,Chan SI

    更新日期:1970-03-01 00:00:00

  • Inhibition of N-methyl-N-nitrosourea-induced mutagenicity and DNA methylation by ellagic acid.

    abstract::Ellagic acid, a naturally occurring plant phenol, inhibits the activity of the direct-acting mutagen N-methyl-N-nitrosourea (MeNU) in Salmonella typhimurium TA100. Ellagic acid at 0.10, 0.25, 0.50, and 1.00 mM inhibited the mutagenicity of MeNU (0.40 mM) by 3%, 13%, 45%, and 60%, respectively. Ellagic acid (3 mM) also...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.83.21.8039

    authors: Dixit R,Gold B

    更新日期:1986-11-01 00:00:00

  • The crystal structures of human steroidogenic factor-1 and liver receptor homologue-1.

    abstract::Steroidogenic factor-1 (SF-1) and liver receptor homologue-1 (LRH-1) belong to the fushi tarazu factor 1 subfamily of nuclear receptors. SF-1 is an essential factor for sex determination during development and regulates adrenal and gonadal steroidogenesis in the adult, whereas LRH-1 is a critical factor for developmen...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0409482102

    authors: Wang W,Zhang C,Marimuthu A,Krupka HI,Tabrizizad M,Shelloe R,Mehra U,Eng K,Nguyen H,Settachatgul C,Powell B,Milburn MV,West BL

    更新日期:2005-05-24 00:00:00

  • Counting primes, groups, and manifolds.

    abstract::Let Lambda=SL(2)(Z) be the modular group and let c(n)(Lambda) be the number of congruence subgroups of Lambda of index at most n. We prove that lim(n--> infinity )(log c(n)(Lambda)/((log n)(2)/log log n))=(3-2(sqrt)2)/4. The proof is based on the Bombieri-Vinogradov "Riemann hypothesis on the average" and on the solut...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0404571101

    authors: Goldfeld D,Lubotzky A,Nikolov N,Pyber L

    更新日期:2004-09-14 00:00:00

  • Point-of-care device to diagnose and monitor neonatal jaundice in low-resource settings.

    abstract::Newborns are at increased risk of jaundice, a condition in which excess bilirubin accumulates in blood. Left untreated, jaundice can lead to neurological impairment and death. Jaundice resulting from unconjugated hyperbilirubinemia is easily treated with exposure to blue light, and phototherapy systems have been devel...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1714020114

    authors: Keahey PA,Simeral ML,Schroder KJ,Bond MM,Mtenthaonnga PJ,Miros RH,Dube Q,Richards-Kortum RR

    更新日期:2017-12-19 00:00:00

  • Period determination in the food-entrainable and methamphetamine-sensitive circadian oscillator(s).

    abstract::Daily rhythmic processes are coordinated by circadian clocks, which are present in numerous central and peripheral tissues. In mammals, two circadian clocks, the food-entrainable oscillator (FEO) and methamphetamine-sensitive circadian oscillator (MASCO), are "black box" mysteries because their anatomical loci are unk...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1206213109

    authors: Pendergast JS,Oda GA,Niswender KD,Yamazaki S

    更新日期:2012-08-28 00:00:00

  • Modulation of age-related insulin sensitivity by VEGF-dependent vascular plasticity in adipose tissues.

    abstract::Mechanisms underlying age-related obesity and insulin resistance are generally unknown. Here, we report age-related adipose vascular changes markedly modulated fat mass, adipocyte functions, blood lipid composition, and insulin sensitivity. Notably, VEGF expression levels in various white adipose tissues (WATs) underw...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1415825111

    authors: Honek J,Seki T,Iwamoto H,Fischer C,Li J,Lim S,Samani NJ,Zang J,Cao Y

    更新日期:2014-10-14 00:00:00

  • Galactose metabolic genes in yeast respond to a ratio of galactose and glucose.

    abstract::Natural environments are filled with multiple, often competing, signals. In contrast, biological systems are often studied in "well-controlled" environments where only a single input is varied, potentially missing important interactions between signals. Catabolite repression of galactose by glucose is one of the best-...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1418058112

    authors: Escalante-Chong R,Savir Y,Carroll SM,Ingraham JB,Wang J,Marx CJ,Springer M

    更新日期:2015-02-03 00:00:00

  • Modification of histidine residues in proteins by reaction with 4-hydroxynonenal.

    abstract::We find that histidine residues in proteins are major targets for reaction with the lipid peroxidation product 4-hydroxynon-2-enal (HNE). Reaction of insulin (which contains no sulfhydryl groups) with HNE leads to the generation of HNE-protein adducts, which are converted to radioactive derivatives upon subsequent tre...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.89.10.4544

    authors: Uchida K,Stadtman ER

    更新日期:1992-05-15 00:00:00

  • Characterizing long-range search behavior in Diptera using complex 3D virtual environments.

    abstract::The exemplary search capabilities of flying insects have established them as one of the most diverse taxa on Earth. However, we still lack the fundamental ability to quantify, represent, and predict trajectories under natural contexts to understand search and its applications. For example, flying insects have evolved ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1912124117

    authors: Kaushik PK,Renz M,Olsson SB

    更新日期:2020-06-02 00:00:00

  • Imbalanced nucleocytoskeletal connections create common polarity defects in progeria and physiological aging.

    abstract::Studies of the accelerated aging disorder Hutchinson-Gilford progeria syndrome (HGPS) can potentially reveal cellular defects associated with physiological aging. HGPS results from expression and abnormal nuclear envelope association of a farnesylated, truncated variant of prelamin A called "progerin." We surveyed the...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1809683116

    authors: Chang W,Wang Y,Luxton GWG,Östlund C,Worman HJ,Gundersen GG

    更新日期:2019-02-26 00:00:00

  • Imaging quantum confinement with optical and POWER (perturbations observed with enhanced resolution) NMR.

    abstract::The nanoscale distributions of electron density and electric fields in GaAs semiconductor devices are displayed with NMR experiments. The spectra are sensitive to the changes to the nuclear-spin Hamiltonian that are induced by perturbations delivered in synchrony with a line-narrowing pulse sequence. This POWER (pertu...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0806563106

    authors: Kempf JG,Miller MA,Weitekamp DP

    更新日期:2008-12-23 00:00:00

  • Tubular presentations pi of subsets of manifolds.

    abstract::In this note the Weierstrass integral J is taken as L, the Riemann integral of length. Here M(n), n > 1, is a compact, connected manifold of class C(infinity) with a positive definite Riemann structure. Presentations (phi, U(phi)) in M(n) and geodesics (with the aid of the Euler-Riemann equations) are defined in Morse...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.74.6.2209

    authors: Morse M

    更新日期:1977-06-01 00:00:00

  • Niche adaptation limits bacteriophage predation of Vibrio cholerae in a nutrient-poor aquatic environment.

    abstract::Vibrio cholerae, the causative agent of cholera, has reservoirs in fresh and brackish water where it interacts with virulent bacteriophages. Phages are the most abundant biological entity on earth and coevolve with bacteria. It was reported that concentrations of phage and V. cholerae inversely correlate in aquatic re...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1810138116

    authors: Silva-Valenzuela CA,Camilli A

    更新日期:2019-01-29 00:00:00

  • Dihydropyridine receptor of L-type Ca2+ channels: identification of binding domains for [3H](+)-PN200-110 and [3H]azidopine within the alpha 1 subunit.

    abstract::To identify the binding domain for dihydropyridine Ca2+ antagonists, skeletal muscle Ca2+ channels were photolabeled with [3H](+)-PN200-110 and [3H]azidopine. Regions of alpha 1 photolabeled by these ligands were then identified by antibody mapping of proteolytic fragments. Approximately 50% of the specific labeling b...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.88.23.10769

    authors: Striessnig J,Murphy BJ,Catterall WA

    更新日期:1991-12-01 00:00:00

  • Identification of a gene that positively regulates expression of listeriolysin, the major virulence factor of listeria monocytogenes.

    abstract::We have isolated, by molecular cloning and genetic complementation of a listeriolysin-negative mutant, a gene required for the expression of this virulence factor in Listeria monocytogenes. The mutant strain SLCC53, which was nonhemolytic and avirulent, harbored a deletion of 450 base pairs located approximately 1500 ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.87.21.8336

    authors: Leimeister-Wächter M,Haffner C,Domann E,Goebel W,Chakraborty T

    更新日期:1990-11-01 00:00:00

  • T lymphocyte response to H-2 mutants: cytotoxic effectors are Ly-1+2+.

    abstract::The lymphocyte differentiation (Ly) antigen phenotype of cytotoxic effector T cells specific for H-2 mutant alloantigens was determined. Cytotoxic effectors generated in primary mixed lymphocyte culture and specific for H-2Kba and H-2Dda alloantigens are sensitive to both anti-Ly-1 and anti-Ly-2 serum plus complement....

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.76.7.3455

    authors: Wettstein PJ,Bailey DW,Mobraaten LE,Klein J,Frelinger JA

    更新日期:1979-07-01 00:00:00