Direct measurement of the free energy by optical microscopy.

Abstract:

:We report the direct measurement of thermodynamic properties of colloidal hard spheres by optical microscopy. By using confocal microscopy, we obtain three-dimensional snapshots of a colloidal hard-sphere suspension over a wide range of densities. From these snapshots, the available volume to insert an additional sphere and the surface area of that volume are determined, which are directly related to the thermodynamics of the system. This procedure enables us to measure in a direct and noninterfering way, in principle, all thermodynamic properties, here demonstrated for the pressure, the chemical potential, and the free-energy density of a colloidal hard-sphere suspension. The "visual" determination of thermodynamic quantities opens up the possibility to experimentally study the relation between thermodynamics and geometry in real space beyond the hard-sphere potential.

authors

Dullens RP,Aarts DG,Kegel WK

doi

10.1073/pnas.0507052103

keywords:

subject

Has Abstract

pub_date

2006-01-17 00:00:00

pages

529-31

issue

3

eissn

0027-8424

issn

1091-6490

pii

0507052103

journal_volume

103

pub_type

杂志文章
  • Anthrax toxin triggers the activation of src-like kinases to mediate its own uptake.

    abstract::AB-type toxins, like other bacterial toxins, are notably opportunistic molecules. They rely on target cell receptors to reach the appropriate location within the target cell where translocation of their enzymatic subunits occurs. The anthrax toxin, however, times its own uptake, suggesting that toxin binding triggers ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0910782107

    authors: Abrami L,Kunz B,van der Goot FG

    更新日期:2010-01-26 00:00:00

  • An approach to the multiple-minima problem by relaxing dimensionality.

    abstract::A method is presented for starting from a very-low-energy high-dimensional conformation and obtaining a low-energy three-dimensional structure by gradual contraction of the dimensionality. The contraction in dimensionality is achieved by use of Cayley-Menger determinants, of which a simplified form is derived here. Pr...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.83.9.2782

    authors: Purisima EO,Scheraga HA

    更新日期:1986-05-01 00:00:00

  • Immuno-Navigator, a batch-corrected coexpression database, reveals cell type-specific gene networks in the immune system.

    abstract::High-throughput gene expression data are one of the primary resources for exploring complex intracellular dynamics in modern biology. The integration of large amounts of public data may allow us to examine general dynamical relationships between regulators and target genes. However, obstacles for such analyses are stu...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1604351113

    authors: Vandenbon A,Dinh VH,Mikami N,Kitagawa Y,Teraguchi S,Ohkura N,Sakaguchi S

    更新日期:2016-04-26 00:00:00

  • A keratinocyte-specific transcription factor, KRF-1, interacts with AP-1 to activate expression of human papillomavirus type 18 in squamous epithelial cells.

    abstract::Human papillomavirus type 18 (HPV-18) infects genital squamous epithelium and is an etiological agent of cervical cancer. Cell-type-specific expression of HPV-18 is directed by the region upstream of the viral early genes that contains a transcriptional enhancer whose function is dependent solely on cellular factors. ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.88.20.9102

    authors: Mack DH,Laimins LA

    更新日期:1991-10-15 00:00:00

  • Transient inositol 1,4,5-trisphosphate-induced Ca2+ release: a model based on regulatory Ca(2+)-binding sites along the permeation pathway.

    abstract::A remarkable property of Ca2+ fluxes through the inositol 1,4,5-trisphosphate (InsP3)-gated Ca2+ channel is that successive increments of InsP3 induce repeated transient release of accumulated Ca2+. The initial aim of this study was to propose a model, based on hypotheses compatible with the current description of thi...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.91.21.10074

    authors: Swillens S,Combettes L,Champeil P

    更新日期:1994-10-11 00:00:00

  • Ordered upwind methods for static Hamilton-Jacobi equations.

    abstract::We introduce a family of fast ordered upwind methods for approximating solutions to a wide class of static Hamilton-Jacobi equations with Dirichlet boundary conditions. Standard techniques often rely on iteration to converge to the solution of a discretized version of the partial differential equation. Our fast method...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.201222998

    authors: Sethian JA,Vladimirsky A

    更新日期:2001-09-25 00:00:00

  • Unique double-stranded fragments of bacteriophage T5 DNA resulting from preferential shear-induced breakage at nicks.

    abstract::Nicks within one strand of the bacteriophage T5 DNA molecule act as " weak points" for a novel kind mechanical breakage that can be utilized for "dissecting" the genome. The products from sheared T5(+) DNA include five unique double-stranded segments of the molecule and various combinations of adjacent segments. These...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.71.5.2108

    authors: Hayward GS

    更新日期:1974-05-01 00:00:00

  • A single negative charge within the pore region of a cGMP-gated channel controls rectification, Ca2+ blockage, and ionic selectivity.

    abstract::Ca2+ ions control the cGMP-gated channel of rod photoreceptor cells from the external and internal face. We studied ion selectivity and blockage by Ca2+ of wild-type and mutant channels in a heterologous expression system. External Ca2+ blocks the inward current at micromolar concentrations in a highly voltage-depende...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.91.3.1109

    authors: Eismann E,Müller F,Heinemann SH,Kaupp UB

    更新日期:1994-02-01 00:00:00

  • Unit activity in the isolated spinal cord of chick embryo, in situ.

    abstract::Unit electrical activity was recorded from single neurons in the isolated lumbo-sacral spinal cord of 14- to 19-day chick embryos, in situ. Spinal cord transection was combined with transection of all lumbo-sacral dorsal roots. The spontaneous discharge of cells is confined, for the most part, to the lower two thirds ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.66.1.40

    authors: Sharma SC,Provine RR,Hamburger V,Sandel TT

    更新日期:1970-05-01 00:00:00

  • Intermembrane transport: Glycerophospholipid homeostasis of the Gram-negative cell envelope.

    abstract::This perspective addresses recent advances in lipid transport across the Gram-negative inner and outer membranes. While we include a summary of previously existing literature regarding this topic, we focus on the maintenance of lipid asymmetry (Mla) pathway. Discovered in 2009 by the Silhavy group [J. C. Malinverni, T...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章,评审

    doi:10.1073/pnas.1902026116

    authors: Powers MJ,Trent MS

    更新日期:2019-08-27 00:00:00

  • Nigrostriatal alpha-synucleinopathy induced by viral vector-mediated overexpression of human alpha-synuclein: a new primate model of Parkinson's disease.

    abstract::We used a high-titer recombinant adeno-associated virus (rAAV) vector to express WT or mutant human alpha-synuclein in the substantia nigra of adult marmosets. The alpha-synuclein protein was expressed in 90-95% of all nigral dopamine neurons and distributed by anterograde transport throughout their axonal and dendrit...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0536383100

    authors: Kirik D,Annett LE,Burger C,Muzyczka N,Mandel RJ,Björklund A

    更新日期:2003-03-04 00:00:00

  • Probing the mechanism of inhibition of amyloid-β(1-42)-induced neurotoxicity by the chaperonin GroEL.

    abstract::The human chaperonin Hsp60 is thought to play a role in the progression of Alzheimer's disease by mitigating against intracellular β-amyloid stress. Here, we show that the bacterial homolog GroEL (51% sequence identity) reduces the neurotoxic effects of amyloid-β(1-42) (Aβ42) on human neural stem cell-derived neuronal...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1817477115

    authors: Wälti MA,Steiner J,Meng F,Chung HS,Louis JM,Ghirlando R,Tugarinov V,Nath A,Clore GM

    更新日期:2018-12-18 00:00:00

  • Peroxisomal D-hydroxyacyl-CoA dehydrogenase deficiency: resolution of the enzyme defect and its molecular basis in bifunctional protein deficiency.

    abstract::Peroxisomes play an essential role in a number of different metabolic pathways, including the beta-oxidation of a distinct set of fatty acids and fatty acid derivatives. The importance of the peroxisomal beta-oxidation system in humans is made apparent by the existence of a group of inherited diseases in which peroxis...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.95.5.2128

    authors: van Grunsven EG,van Berkel E,Ijlst L,Vreken P,de Klerk JB,Adamski J,Lemonde H,Clayton PT,Cuebas DA,Wanders RJ

    更新日期:1998-03-03 00:00:00

  • Cyclic 3':5'-adenosine monophosphate in Escherichia coli during transient and catabolite repression.

    abstract::Cyclic AMP concentrations were low for an adenylate cyclase-deficient mutant (cya(-)) and abnormally high for a catabolite receptor protein-deficient mutant (crp(-)). A fall in cellular cAMP concentration was always found when cells were subjected to transient repression. No consistent correlations were observed betwe...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.71.4.1436

    authors: Wayne PK,Rosen OM

    更新日期:1974-04-01 00:00:00

  • Light exposure stimulates formation of A2E oxiranes in a mouse model of Stargardt's macular degeneration.

    abstract::Recessive Stargardt's macular degeneration is a blinding disease of children caused by mutations in the ABCA4 (ABCR) gene. Mice with a knockout mutation in abcr accumulate toxic lipofuscin pigments in ocular tissues, similar to affected humans. The major fluorophore of lipofuscin is the bis-retinoid, N-retinylidene-N-...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0308302101

    authors: Radu RA,Mata NL,Bagla A,Travis GH

    更新日期:2004-04-20 00:00:00

  • Evolutionary conservation of the insulinoma gene rig and its possible function.

    abstract::We have identified a gene, rig (rat insulinoma gene), that is activated in chemically induced rat insulinomas but not in normal pancreatic islets or in regenerating islets. In the present study, we have found that the insulinoma gene was activated in a BK virus-induced hamster insulinoma cell line and in a spontaneous...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.84.19.6659

    authors: Inoue C,Shiga K,Takasawa S,Kitagawa M,Yamamoto H,Okamoto H

    更新日期:1987-10-01 00:00:00

  • Reach and speed of judgment propagation in the laboratory.

    abstract::In recent years, a large body of research has demonstrated that judgments and behaviors can propagate from person to person. Phenomena as diverse as political mobilization, health practices, altruism, and emotional states exhibit similar dynamics of social contagion. The precise mechanisms of judgment propagation are ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1611998114

    authors: Moussaïd M,Herzog SM,Kämmer JE,Hertwig R

    更新日期:2017-04-18 00:00:00

  • Chiral N-heterocyclic carbene-catalyzed generation of ester enolate equivalents from {alpha},{beta}-unsaturated aldehydes for enantioselective Diels-Alder reactions.

    abstract::The catalytic generation of chiral ester enolate equivalents from α,β-unsaturated aldehydes with chiral N-hetereocyclic carbene catalysts makes possible highly enantioselective hetero-Diels-Alder reactions. The reactions proceed under simple, mild conditions with both aliphatic and aromatic substituted enals as substr...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1007469107

    authors: Kaeobamrung J,Kozlowski MC,Bode JW

    更新日期:2010-11-30 00:00:00

  • Stimulation and inhibition of anti-hapten responses in guinea pigs immunized with hybrid liposomes.

    abstract::Guinea pigs were immunized with liposomal model membranes containing phosphatidylethanolamine (PE) or glycerophosphorylethanolamine (GPE) derivatives in which the amino function was substituted with either dinitrophenylaminocaproyl (Dnp-Cap) or mono(p-azobenzenearsonic acid)tyrosyl (ABA-Tyr) residues. Previous studies...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.72.11.4582

    authors: Kochibe N,Nicolotti RA,Davie JM,Kinsky SC

    更新日期:1975-11-01 00:00:00

  • Structural studies on the authentic mumps virus nucleocapsid showing uncoiling by the phosphoprotein.

    abstract::Mumps virus (MuV) is a highly contagious pathogen, and despite extensive vaccination campaigns, outbreaks continue to occur worldwide. The virus has a negative-sense, single-stranded RNA genome that is encapsidated by the nucleocapsid protein (N) to form the nucleocapsid (NC). NC serves as the template for both transc...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1413268111

    authors: Cox R,Pickar A,Qiu S,Tsao J,Rodenburg C,Dokland T,Elson A,He B,Luo M

    更新日期:2014-10-21 00:00:00

  • Active learning machine learns to create new quantum experiments.

    abstract::How useful can machine learning be in a quantum laboratory? Here we raise the question of the potential of intelligent machines in the context of scientific research. A major motivation for the present work is the unknown reachability of various entanglement classes in quantum experiments. We investigate this question...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1714936115

    authors: Melnikov AA,Poulsen Nautrup H,Krenn M,Dunjko V,Tiersch M,Zeilinger A,Briegel HJ

    更新日期:2018-02-06 00:00:00

  • Receptors induce chemotaxis by releasing the betagamma subunit of Gi, not by activating Gq or Gs.

    abstract::Many chemoattractants cause chemotaxis of leukocytes by stimulating a structurally distinct class of G protein-coupled receptors. To identify receptor functions required for chemotaxis, we studied chemotaxis in HEK293 cells transfected with receptors for nonchemokine ligands or for interleukin 8 (IL-8), a classical ch...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.94.26.14489

    authors: Neptune ER,Bourne HR

    更新日期:1997-12-23 00:00:00

  • An atomic resolution view of ICAM recognition in a complex between the binding domains of ICAM-3 and integrin alphaLbeta2.

    abstract::Within the Ig superfamily (IgSF), intercellular adhesion molecules (ICAMs) form a subfamily that binds the leukocyte integrin alphaLbeta2. We report a 1.65-A-resolution crystal structure of the ICAM-3 N-terminal domain (D1) in complex with the inserted domain, the ligand-binding domain of alphaLbeta2. This high-resolu...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0500200102

    authors: Song G,Yang Y,Liu JH,Casasnovas JM,Shimaoka M,Springer TA,Wang JH

    更新日期:2005-03-01 00:00:00

  • Assessment of individual radionuclide distributions from the Fukushima nuclear accident covering central-east Japan.

    abstract::A tremendous amount of radioactivity was discharged because of the damage to cooling systems of nuclear reactors in the Fukushima No. 1 nuclear power plant in March 2011. Fukushima and its adjacent prefectures were contaminated with fission products from the accident. Here, we show a geographical distribution of radio...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1111724108

    authors: Kinoshita N,Sueki K,Sasa K,Kitagawa J,Ikarashi S,Nishimura T,Wong YS,Satou Y,Handa K,Takahashi T,Sato M,Yamagata T

    更新日期:2011-12-06 00:00:00

  • Homosynaptic long-term depression in area CA1 of hippocampus and effects of N-methyl-D-aspartate receptor blockade.

    abstract::We tested a theoretical prediction that patterns of excitatory input activity that consistently fail to activate target neurons sufficiently to induce synaptic potentiation will instead cause a specific synaptic depression. To realize this situation experimentally, the Schaffer collateral projection to area CA1 in rat...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.89.10.4363

    authors: Dudek SM,Bear MF

    更新日期:1992-05-15 00:00:00

  • Timescale-dependent shaping of correlation by olfactory bulb lateral inhibition.

    abstract::Neurons respond to sensory stimuli by altering the rate and temporal pattern of action potentials. These spike trains both encode and propagate information that guides behavior. Local inhibitory networks can affect the information encoded and propagated by neurons by altering correlations between different spike train...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1015165108

    authors: Giridhar S,Doiron B,Urban NN

    更新日期:2011-04-05 00:00:00

  • Biologically inspired crack trapping for enhanced adhesion.

    abstract::We present a synthetic adaptation of the fibrillar adhesion surfaces found in nature. The structure consists of protruding fibrils topped by a thin plate and shows an experimentally measured enhancement in adhesion energy of up to a factor of 9 over a flat control. Additionally, this structure solves the robustness pr...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0703762104

    authors: Glassmaker NJ,Jagota A,Hui CY,Noderer WL,Chaudhury MK

    更新日期:2007-06-26 00:00:00

  • Evolution of the mammalian placenta revealed by phylogenetic analysis.

    abstract::The placenta is essential for the success of therian mammalian reproduction. Intense selective pressure has shaped changes in placental anatomy and function during mammalian cladogenesis. Here we challenge the view that the hemochorial placenta is a derived feature in haplorhine primates. Using phylogenetic and statis...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0511344103

    authors: Wildman DE,Chen C,Erez O,Grossman LI,Goodman M,Romero R

    更新日期:2006-02-28 00:00:00

  • Dynamic regulation of functionally distinct virus-specific T cells.

    abstract::The functional capacities of CD8(+) T cells important for virus clearance are influenced by interactions with antigen presenting cells (APCs) and CD4(+) T cells during initial selection, subsequent expansion, and development of memory. Recently, investigators have shown that polyfunctional T cells correlate best with ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0915168107

    authors: Ndhlovu ZM,Oelke M,Schneck JP,Griffin DE

    更新日期:2010-02-23 00:00:00

  • Body map proto-organization in newborn macaques.

    abstract::Topographic sensory maps are a prominent feature of the adult primate brain. Here, we asked whether topographic representations of the body are present at birth. Using functional MRI (fMRI), we find that the newborn somatomotor system, spanning frontoparietal cortex and subcortex, comprises multiple topographic repres...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1912636116

    authors: Arcaro MJ,Schade PF,Livingstone MS

    更新日期:2019-12-03 00:00:00