Gene expression profiling in response to the histone deacetylase inhibitor BL1521 in neuroblastoma.

Abstract:

:Neuroblastoma is a childhood tumor with a poor survival in advanced stage disease despite intensive chemotherapeutic regimes. The new histone deacetylase (HDAC) inhibitor BL1521 has shown promising results in neuroblastoma. Inhibition of HDAC resulted in a decrease in proliferation and metabolic activity, induction of apoptosis and differentiation of neuroblastoma cells. In order to elucidate the mechanism mediating the effects of BL1521 on neuroblastoma cells, we investigated the gene expression profile of an MYCN single copy (SKNAS) and an MYCN amplified (IMR32) neuroblastoma cell line after treatment with BL1521 using the Affymetrix oligonucleotide array U133A. An altered expression of 255 genes was observed in both neuroblastoma cell lines. The majority of these genes were involved in gene expression, cellular metabolism, and cell signaling. We observed changes in the expression of vital genes belonging to the cell cycle (cyclin D1 and CDK4) and apoptosis (BNIP3, BID, and BCL2) pathway in response to BL1521. The expression of 37 genes was altered by both BL1521 and Trichostatin A, which could indicate a common gene set regulated by different HDAC inhibitors. BL1521 treatment changed the expression of a number of MYCN-associated genes. Several genes in the Wnt and the Delta/Notch pathways were changed in response to BL1521 treatment, suggesting that BL1521 is able to induce the differentiation of neuroblastoma cells into a more mature phenotype.

journal_name

Exp Cell Res

authors

de Ruijter AJ,Meinsma RJ,Bosma P,Kemp S,Caron HN,van Kuilenburg AB

doi

10.1016/j.yexcr.2005.06.024

keywords:

subject

Has Abstract

pub_date

2005-10-01 00:00:00

pages

451-67

issue

2

eissn

0014-4827

issn

1090-2422

pii

S0014-4827(05)00307-1

journal_volume

309

pub_type

杂志文章
  • Processing of the human protocadherin Fat1 and translocation of its cytoplasmic domain to the nucleus.

    abstract::The giant protein hFat1, a member of the cadherin superfamily, has been proposed to play roles in cerebral development, glomerular slit formation, and also to act as a tumor suppressor, but its mechanisms of action have not been elucidated. To examine functions of the transmembrane and cytoplasmic domains, they were e...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1016/j.yexcr.2005.03.006

    authors: Magg T,Schreiner D,Solis GP,Bade EG,Hofer HW

    更新日期:2005-07-01 00:00:00

  • AP4A-hydrolysing activity in sea urchin embryos.

    abstract::The enzyme activity hydrolysing diadenosine 5,5'-P1, P4-tetraphosphate (AP4A) was demonstrated in the embryonic extract of sea urchin. The enzyme activity was preferentially inhibited by ZnCl2 and by high concentrations of isobutylmethylxanthine, indicating that two types of the enzyme, (AP4A) hydrolase and non-specif...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1016/0014-4827(87)90224-2

    authors: Morioka M,Shimada H

    更新日期:1987-03-01 00:00:00

  • p21ras. Heterogeneous localization in transformed cells.

    abstract::The cellular targets for the Kirsten murine sarcoma virus (KiMSV)-transforming protein, p21ras, are unknown. Other studies have indicated that the mature form of p21 is distributed diffusely on the cytoplasmic face of the plasma membrane. However, after fixation without buffer washes, indirect immunofluorescent staini...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1016/s0014-4827(85)80017-3

    authors: Myrdal SE,Auersperg N

    更新日期:1985-08-01 00:00:00

  • Functional expression of human DNA topoisomerase I and its subcellular localization in HeLa cells.

    abstract::DNA topoisomerase (topo) I plays an important role in DNA metabolism by relieving the torsional restraints of DNA topology through ATP-independent single-strand DNA breakage. In the present study, we expressed human topo I in HeLa cells by fusing it to enhanced green fluorescent protein (EGFP). The EGFP-topo I fusion ...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1006/excr.2000.4864

    authors: Mo YY,Wang P,Beck WT

    更新日期:2000-05-01 00:00:00

  • eIF4E-Overexpression imparts perillyl alcohol and rapamycin-mediated regulation of telomerase reverse transcriptase.

    abstract::Translation is mediated partly by regulation of free eukaryotic initiation factor 4E (eIF4E) levels through PI3K-Akt-mTOR signaling. Cancer cells treated with the plant-derived perillyl alcohol (POH) or the mechanistic target of rapamycin (mTOR) inhibitor rapamycin dephosphorylate eIF4E-binding protein (4E-BP1) and at...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1016/j.yexcr.2013.05.029

    authors: Sundin T,Peffley D,Hentosh P

    更新日期:2013-08-01 00:00:00

  • Bone morphogenetic protein-4 is overexpressed in colonic adenocarcinomas and promotes migration and invasion of HCT116 cells.

    abstract::Bone morphogenetic protein (BMP), a member of the TGF-beta superfamily, is involved in development, morphogenesis, cell proliferation and apoptosis. Dysregulation of BMP signaling has been suggested in tumorigenesis. In an analysis of human colon normal mucosa and tumors at different stages by immunohistochemistry, we...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1016/j.yexcr.2006.12.020

    authors: Deng H,Makizumi R,Ravikumar TS,Dong H,Yang W,Yang WL

    更新日期:2007-03-10 00:00:00

  • miR-34a expands myeloid-derived suppressor cells via apoptosis inhibition.

    abstract::Myeloid-derived suppressor cells (MDSCs) are a heterogeneous population and show significant expansion under pathological conditions. microRNA plays important roles in many biological processes, whether microRNAs have a function in the expansion of MDSCs is still not very clear. In this study, miR-34a overexpression c...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1016/j.yexcr.2014.04.010

    authors: Huang A,Zhang H,Chen S,Xia F,Yang Y,Dong F,Sun D,Xiong S,Zhang J

    更新日期:2014-08-15 00:00:00

  • Cellular contraction of collagen lattices is inhibited by nonenzymatic glycation.

    abstract::High glucose concentrations associated with diabetes have been shown to cause the nonenzymatic modification of proteins. Reducing sugars covalently bind to free amine groups, undergo Amadori rearrangements, and crosslink with other glucose-modified proteins. Crosslinking of type I collagen by incubation with different...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1006/excr.1996.0308

    authors: Howard EW,Benton R,Ahern-Moore J,Tomasek JJ

    更新日期:1996-10-10 00:00:00

  • Epigenetic activation of the 5-hydroxytryptamine (serotonin) receptor 2C in embryonal carcinoma cells is DNA replication-dependent.

    abstract::The epigenetic states of key regulatory genes must be altered to drive cell fate decisions in differentiating cells. This process must be coupled, at least transiently, to the DNA replication machinery. Only a few genes, however, have been shown to require DNA replication for their activation or repression upon induct...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1016/j.yexcr.2004.04.021

    authors: Bancescu DL,Glatt-Deeley H,Lalande M

    更新日期:2004-08-01 00:00:00

  • Analysis of the inductive effect of the genomic equivalent of HALF1 sequence in the reversion of rat dedifferentiated hepatoma cells.

    abstract::HALF1 (human activator of liver function 1) is a closed DNA duplex implicated in reversion of rat dedifferentiated C2 hepatoma cells to a well-differentiated state. A copy of HALF1 is found in high-molecular-weight DNA in the human genome. The genomic equivalent of HALF1 and its flanking sequences [gH(5'-3') fragment]...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1006/excr.1994.1180

    authors: Boccaccio C,Meunier-Rotival M,Deschatrette J

    更新日期:1994-07-01 00:00:00

  • Involvement of cyclic GMP in the fusion of chick embryonic myoblasts in culture.

    abstract::We found that a transient rise in cGMP levels, which was closely associated with the Ca2+ influx, occurred concomitant with the onset of myoblast fusion. The Ca2+ channel blocker D600 decreased both the cell fusion and the normal rise in cGMP levels. In contrast, the Ca2+ ionophore A23187 transiently increased cGMP le...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1016/0014-4827(92)90470-s

    authors: Choi SW,Baek MY,Kang MS

    更新日期:1992-03-01 00:00:00

  • Morphological analysis of the transfer of VSV ts-045 G glycoprotein from the endoplasmic reticulum to the intermediate compartment in vero cells.

    abstract::Vero cells were infected with the ts-045 strain of vesicular stomatitis virus, and the cells were incubated at 39 degrees C to accumulate the mutant G glycoprotein in the ER as a misfolded aggregate. Cycloheximide was added to the culture medium 3.5 h after infection to prevent further protein synthesis, and the tempe...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1006/excr.1996.0281

    authors: Lotti LV,Torrisi MR,Erra MC,Bonatti S

    更新日期:1996-09-15 00:00:00

  • Increased mitochondrial uptake of rhodamine 123 by CDDP treatment.

    abstract::Rhodamine 123 (R 123) is a positively charged dye at physiological pH that accumulates specifically in the mitochondria of living cells without cytotoxic effect. In the present study, the uptake of R 123 by EL-4 lymphoma cells in culture with anticancer agents was measured by flow cytometry. Changes in R 123 uptake du...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1016/0014-4827(92)90162-2

    authors: Shinomiya N,Tsuru S,Katsura Y,Sekiguchi I,Suzuki M,Nomoto K

    更新日期:1992-01-01 00:00:00

  • Activity of a novel PDGF beta-receptor enhancer during the cell cycle and upon differentiation of neuroblastoma.

    abstract::PDGF acts as an autocrine and paracrine factor in certain tumors through upregulation of the PDGF beta-receptor expression. In order to elucidate the control mechanism for the receptor expression, we have isolated an enhancer from two P1 clones that together contain a 102 kb NotI region covering the entire human PDGFR...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1016/j.yexcr.2006.03.005

    authors: Kaneko M,Yang W,Matsumoto Y,Watt F,Funa K

    更新日期:2006-07-01 00:00:00

  • Transforming growth factor-beta activates both pro-apoptotic and survival signals in fetal rat hepatocytes.

    abstract::Transforming growth factor-beta (TGF-beta) induces apoptosis in fetal rat hepatocytes. However, a subpopulation of these cells survives concomitant with changes in morphology and phenotype, reminiscent of an epithelial mesenchymal transition (EMT) [Exp. Cell Res. 252 (1999) 281-291]. In this work, we have isolated the...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1016/j.yexcr.2003.08.015

    authors: Valdés F,Murillo MM,Valverde AM,Herrera B,Sánchez A,Benito M,Fernández M,Fabregat I

    更新日期:2004-01-01 00:00:00

  • The structural analysis of adhesions mediated by Ep-CAM.

    abstract::The epithelial cell adhesion molecule Ep-CAM is capable of mediating Ca2+-independent homotypic cell-cell adhesion when introduced into cells lacking their own means of cell-cell interactions. We used (confocal) immunofluorescent and (immuno-) electron microscopy to investigate the structural organization of Ep-CAM-me...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1006/excr.1998.4263

    authors: Balzar M,Prins FA,Bakker HA,Fleuren GJ,Warnaar SO,Litvinov SV

    更新日期:1999-01-10 00:00:00

  • Possible role of deep tubular invaginations of the plasma membrane in MHC-I trafficking.

    abstract::Tubules and vesicles are membrane carriers involved in traffic along the endocytic and secretory routes. The small GTPase Arf6 regulates a recycling branch of short dynamic tubular intermediates used by major histocompatibility class I (MHC-I) molecules to traffic through vesicles between endosomes and the plasma memb...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1016/j.yexcr.2005.01.021

    authors: Massol RH,Larsen JE,Kirchhausen T

    更新日期:2005-05-15 00:00:00

  • Rap G protein signal in normal and disordered lymphohematopoiesis.

    abstract::Rap proteins (Rap1, Rap2a, b, c) are small molecular weight GTPases of the Ras family. Rap G proteins mediate diverse cellular events such as cell adhesion, proliferation, and gene activation through various signaling pathways. Activation of Rap signal is regulated tightly by several specific regulatory proteins inclu...

    journal_title:Experimental cell research

    pub_type: 杂志文章,评审

    doi:10.1016/j.yexcr.2013.04.009

    authors: Minato N

    更新日期:2013-09-10 00:00:00

  • Knockdown of dual specificity phosphatase 4 enhances the chemosensitivity of MCF-7 and MCF-7/ADR breast cancer cells to doxorubicin.

    abstract:BACKGROUND:Breast cancer is the major cause of cancer-related deaths in females world-wide. Doxorubicin-based therapy has limited efficacy in breast cancer due to drug resistance, which has been shown to be associated with the epithelial-to-mesenchymal transition (EMT). However, the molecular mechanisms linking the EMT...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1016/j.yexcr.2013.08.023

    authors: Liu Y,Du F,Chen W,Yao M,Lv K,Fu P

    更新日期:2013-12-10 00:00:00

  • Cell cycle-dependent DNA damage signaling induced by ICRF-193 involves ATM, ATR, CHK2, and BRCA1.

    abstract::Topoisomerase II is essential for cell proliferation and survival and has been a target of various anticancer drugs. ICRF-193 has long been used as a catalytic inhibitor to study the function of topoisomerase II. Here, we show that ICRF-193 treatment induces DNA damage signaling. Treatment with ICRF-193 induced G2 arr...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1016/j.yexcr.2006.02.029

    authors: Park I,Avraham HK

    更新日期:2006-07-01 00:00:00

  • Glucocerebrosidase deficiency and lysosomal storage of glucocerebroside induced in cultured macrophages.

    abstract::A cell culture model stimulating the genetic deficiency of glucocerebrosidase has been developed, utilizing macrophages and conduritol B epoxide (CBE), the specific irreversible inhibitor of the enzyme. Rat peritoneal macrophage glucocerebrosidase was completely inhibited when cells were treated with 10 microM CBE for...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1016/0014-4827(87)90019-x

    authors: Das PK,Murray GJ,Gal AE,Barranger JA

    更新日期:1987-02-01 00:00:00

  • Nuclear RNAs confined to a reticular compartment between chromosome territories.

    abstract::RNA polymerase II transcripts are confined to nuclear compartments. A detailed analysis of the nuclear topology of RNA from individual genes was performed for transcripts from the marker gene coding for chloramphenicol acetyltransferase, expressed at a high level from the HTLV-1 LTR promoter. The construct was transfe...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1016/j.yexcr.2004.07.038

    authors: Bridger JM,Kalla C,Wodrich H,Weitz S,King JA,Khazaie K,Kräusslich HG,Lichter P

    更新日期:2005-01-15 00:00:00

  • Homeostatic regulation of meiotic DSB formation by ATM/ATR.

    abstract::Ataxia-telangiectasia mutated (ATM) and RAD3-related (ATR) are widely known as being central players in the mitotic DNA damage response (DDR), mounting responses to DNA double-strand breaks (DSBs) and single-stranded DNA (ssDNA) respectively. The DDR signalling cascade couples cell cycle control to damage-sensing and ...

    journal_title:Experimental cell research

    pub_type: 杂志文章,评审

    doi:10.1016/j.yexcr.2014.07.016

    authors: Cooper TJ,Wardell K,Garcia V,Neale MJ

    更新日期:2014-11-15 00:00:00

  • Immortalisation of human ovarian surface epithelium with telomerase and temperature-sensitive SV40 large T antigen.

    abstract::Epithelial ovarian cancer is the most common form of gynaecological malignancy. This lethal disease is thought to arise in ovarian surface epithelial (OSE) cells. The biology of these cells is not well understood, due to the limited amount of tissue that can be obtained from a single biopsy and their limited life span...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1016/s0014-4827(03)00218-0

    authors: Davies BR,Steele IA,Edmondson RJ,Zwolinski SA,Saretzki G,von Zglinicki T,O'Hare MJ

    更新日期:2003-08-15 00:00:00

  • Estrogen receptor alpha (ESR1)-signaling regulates the expression of the taxane-response biomarker PRP4K.

    abstract::The pre-mRNA splicing factor 4 kinase PRP4K (PRPF4B), is an essential kinase that is a component of the U5 snRNP and functions in spliceosome assembly. We demonstrated that PRP4K is a novel biological marker for taxane response in ovarian cancer patients and reduced levels of PRP4K correlate with intrinsic and acquire...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1016/j.yexcr.2015.12.013

    authors: Lahsaee S,Corkery DP,Anthes LE,Holly A,Dellaire G

    更新日期:2016-01-01 00:00:00

  • The cell-cell adhesion molecule EpCAM interacts directly with the tight junction protein claudin-7.

    abstract::We recently described that in the metastasizing rat pancreatic carcinoma line BSp73ASML the cell-cell adhesion molecule EpCAM, CD44 variant isoforms and the tetraspanins D6.1A and CD9 form a complex that is located in glycolipid-enriched membrane microdomains. This complex contains, in addition, an undefined 20 kDa pr...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1016/j.yexcr.2005.06.013

    authors: Ladwein M,Pape UF,Schmidt DS,Schnölzer M,Fiedler S,Langbein L,Franke WW,Moldenhauer G,Zöller M

    更新日期:2005-10-01 00:00:00

  • Restoration of daunomycin retention in multidrug-resistant P388 cells by submicromolar concentrations of SDZ PSC 833, a nonimmunosuppressive cyclosporin derivative.

    abstract::Overexpression of P-glycoprotein may cause increased efflux of a variety of anticancer drugs (ACD) leading to multidrug resistance (MDR) of tumor cells. Two sublines of murine monocytic leukemia P388 cells were used, one parental (Par-P388) and one multidrug resistant (MDR-P388). In cell growth inhibition assays in vi...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1016/0014-4827(91)90452-z

    authors: Boesch D,Muller K,Pourtier-Manzanedo A,Loor F

    更新日期:1991-09-01 00:00:00

  • Zinc chloride affects chondrogenesis via VEGF signaling.

    abstract::Insulin mimetics, including zinc containing compounds, have previously been shown to influence chondrogenesis as it relates to healing of fractures in various preclinical models. However, the mechanism by which these compounds drive chondrogenic differentiation is yet undefined. Here, via next-generation sequencing (N...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1016/j.yexcr.2020.112436

    authors: Hozain S,Hernandez A,Fuller J,Sharp G,Cottrell J

    更新日期:2021-01-21 00:00:00

  • Introducing www.axolotl-omics.org - an integrated -omics data portal for the axolotl research community.

    abstract::Genomic resources are indispensable for biological investigations in model organisms. In recent years, a number of genomic resources including a full genome assembly, extensive transcriptomic data, as well as genome editing has been developed for the axolotl, a classical model organism for developmental, neurobiologic...

    journal_title:Experimental cell research

    pub_type: 杂志文章,评审

    doi:10.1016/j.yexcr.2020.112143

    authors: Nowoshilow S,Tanaka EM

    更新日期:2020-09-01 00:00:00

  • Mitosis-arresting effect of the calcium channel inhibitor SK&F 96365 on human leukemia cells.

    abstract::The effect of SK&F 96365 (1-(beta-[3-(4-methoxyphenyl)propoxyl]-4- methoxyphenethyl)-1H-imidazole hydrochloride), a recently synthesized inhibitor of receptor-mediated calcium entry, was investigated on human hematopoietic cell lines. We found that treatment of the T-cell leukemia line Jurkat with SK&F 96365 inhibited...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1016/0014-4827(92)90103-f

    authors: Nordström T,Nevanlinna HA,Andersson LC

    更新日期:1992-10-01 00:00:00