Characterization of EST-derived microsatellites in the wheat genome and development of eSSR markers.

abstract：:Comparative genomic analysis is the cornerstone of in silico-based approaches to understanding biological systems and processes across cereal species, such as rice, wheat and barley, in order to identify genes of agronomic interest. The size of the genomic repositories is nearly doubling every year, and this has signi...

journal_title：Functional & integrative genomics

authors： Bellgard M,Ye J,Gojobori T,Appels R

更新日期：2004-03-01 00:00:00

abstract：:Cotton (Gossypium spp.) is an imperative economic crop of the globe due to its natural textile fiber. Molecular mechanisms of fiber development have been greatly revealed in allotetraploid cotton but remained unexplored in Gossypium herbaceum. G. herbaceum can withstand the rigors of nature like drought and pests but ...

journal_title：Functional & integrative genomics

authors： Parekh MJ,Kumar S,Fougat RS,Zala HN,Pandit RJ

更新日期：2018-03-01 00:00:00

abstract：:Medicago sativa L. (alfalfa) 'Zhaodong' is an important forage legume that can safely survive in northern China where winter temperatures reach as low as -30 °C. Survival of alfalfa following freezing stress depends on the amount and revival ability of crown buds. In order to investigate the molecular mechanisms of fr...

journal_title：Functional & integrative genomics

authors： Song L,Jiang L,Chen Y,Shu Y,Bai Y,Guo C

更新日期：2016-09-01 00:00:00

abstract：:Winter wheat lines can achieve cold acclimation (development of tolerance to freezing temperatures) and vernalization (delay in transition from vegetative to reproductive phase) in response to low non-freezing temperatures. To describe cold-acclimation-specific processes and pathways, we utilized cold acclimation tran...

journal_title：Functional & integrative genomics

authors： Karki A,Horvath DP,Sutton F

更新日期：2013-03-01 00:00:00

abstract：:In grapes (Vitis vinifera L.), exogenous gibberellic acid (GA3) is applied at different stages of bunch development to achieve desirable bunch shape and berry size in seedless grapes used for table purpose. RNA sequence-based transcriptome analysis was used to understand the mechanism of GA3 action at cluster emergenc...

journal_title：Functional & integrative genomics

authors： Upadhyay A,Maske S,Jogaiah S,Kadoo NY,Gupta VS

更新日期：2018-07-01 00:00:00

abstract：:The IbeA (ibe10) gene is an invasion determinant contributing to E. coli K1 invasion of the blood-brain barrier. This gene has been cloned and characterized from the chromosome of an invasive cerebrospinal fluid isolate of E. coli K1, strain RS218 (018:K1: H7). In the present study, a genetic island of meningitic E. c...

journal_title：Functional & integrative genomics

authors： Huang SH,Chen YH,Kong G,Chen SH,Besemer J,Borodovsky M,Jong A

更新日期：2001-09-01 00:00:00

abstract：:In silico analysis together with cloning, molecular characterization and heterologous expression reports that the hypothetical protein All5371 of Anabaena sp. PCC7120 is a novel hydroperoxide scavenging protein similar to AhpD of bacteria. The presence of E(X)11CX HC(X)3H motif in All5371 confers peroxidase activity a...

journal_title：Functional & integrative genomics

authors： Shrivastava AK,Singh S,Singh PK,Pandey S,Rai LC

更新日期：2015-01-01 00:00:00

abstract：:Advances in our understanding of genome structure provide consistent evidence for the existence of a core genome representing species classically defined by phenotype, as well as conditionally dispensable components of the genome that shows extensive variation between individuals of a given species. Generally, conserv...

journal_title：Functional & integrative genomics

authors： Appels R,Barrero R,Bellgard M

更新日期：2013-03-01 00:00:00

abstract：:Barley (Hordeum vulgare L.) is one of the most important large-genome cereals with extensive genetic resources available in the public sector. Studies of genome organization in barley have been limited primarily to genetic markers and sparse sequence data. Here we report sequence analysis of 417.5 kb DNA from four BAC...

journal_title：Functional & integrative genomics

authors： Rostoks N,Park YJ,Ramakrishna W,Ma J,Druka A,Shiloff BA,SanMiguel PJ,Jiang Z,Brueggeman R,Sandhu D,Gill K,Bennetzen JL,Kleinhofs A

更新日期：2002-05-01 00:00:00

abstract：:The whole genome expression pattern of Arabidopsis in response to the auxinic herbicide 2,4-dichlorophenoxyacetic acid (2,4-D) was evaluated using the Affymetrix ATH1-121501 array. Arabidopsis plants were grown in vitro and were exposed to 1 mM 2,4-D for 1 h, after which time gene transcription levels were measured. I...

journal_title：Functional & integrative genomics

authors： Raghavan C,Ong EK,Dalling MJ,Stevenson TW

更新日期：2005-01-01 00:00:00

abstract：:Culex pipiens mosquitoes are important disease vectors inhabiting temperate zones, worldwide. The seasonal reduction in temperature and photoperiod accompanying late summer and early fall prompts female mosquitoes to enter diapause, a stage of developmental arrest and physiological conditioning that enhances survival ...

journal_title：Functional & integrative genomics

authors： Hickner PV,Mori A,Zeng E,Tan JC,Severson DW

更新日期：2015-07-01 00:00:00

abstract：:Bread wheat (Triticum aestivum L.) is one of the most important crops globally and a high priority for genetic improvement, but its large and complex genome has been seen as intractable to whole genome sequencing. Isolation of individual wheat chromosome arms has facilitated large-scale sequence analyses. However, so ...

journal_title：Functional & integrative genomics

authors： Lucas SJ,Šimková H,Šafář J,Jurman I,Cattonaro F,Vautrin S,Bellec A,Berges H,Doležel J,Budak H

更新日期：2012-03-01 00:00:00

abstract：:Aminopeptidase H11, an integral membrane glycoprotein present only in the gut of Haemonchus contortus, could provide substantial protection as shown by 90% reduction in fecal egg counts, while its recombinant version expressed in E. coli induced little. To investigate the characteristics further, we amplified mRNA of ...

journal_title：Functional & integrative genomics

authors： Zhou QJ,Zhang HL,Jiang XL,Du AF

更新日期：2010-11-01 00:00:00

abstract：:Intronless genes, a characteristic feature of prokaryotes, constitute a significant portion of the eukaryotic genomes. Our analysis revealed the presence of 11,109 (19.9%) and 5,846 (21.7%) intronless genes in rice and Arabidopsis genomes, respectively, belonging to different cellular role and gene ontology categories...

journal_title：Functional & integrative genomics

authors： Jain M,Khurana P,Tyagi AK,Khurana JP

更新日期：2008-02-01 00:00:00

abstract：:Control of proteolysis is important for plant growth, development, responses to stress, and defence against insects and pathogens. Members of the serpin protein family are likely to play a critical role in this control through irreversible inhibition of endogenous and exogenous target proteinases. Serpins have been fo...

journal_title：Functional & integrative genomics

authors： Roberts TH,Hejgaard J

更新日期：2008-02-01 00:00:00

abstract：:We have previously reported that the deletion of BMAL1 gene has opposite effects in respect to its contribution to the pathways that are effective in the multistage carcinogenesis process. BMAL1 deletion sensitized nearly normal breast epithelial (MCF10A) and invasive breast cancer cells (MDA-MB-231) to cisplatin- and...

journal_title：Functional & integrative genomics

authors： Emisoglu-Kulahli H,Gul S,Morgil H,Ozcan O,Aygenli F,Selvi S,Kavakli IH,Ozturk N

更新日期：2021-01-01 00:00:00

abstract：:Carefully analyzed expression profiles can serve as a valuable reference for deciphering gene functions. We exploited the potential of whole genome microarrays to measure the spatial and temporal expression profiles of rice genes in 19 stages of vegetative and reproductive development. We could verify expression of 22...

journal_title：Functional & integrative genomics

authors： Sharma R,Agarwal P,Ray S,Deveshwar P,Sharma P,Sharma N,Nijhawan A,Jain M,Singh AK,Singh VP,Khurana JP,Tyagi AK,Kapoor S

更新日期：2012-06-01 00:00:00

abstract：:Microarray experiments are being increasingly used in molecular biology. A common task is to detect genes with differential expression across two experimental conditions, such as two different tissues or the same tissue at two time points of biological development. To take proper account of statistical variability, so...

journal_title：Functional & integrative genomics

authors： Huang X,Pan W

更新日期：2002-08-01 00:00:00

abstract：:The Maize Gene Discovery Project (MGDP) is a 5-year NSF-funded plant genome initiative that began in 1998. The MGDP collaboration involves researchers at six universities from diverse disciplines with the common goal of discovering new maize genes and developing tools for the phenotypic characterization of maize mutan...

journal_title：Functional & integrative genomics

authors： Lunde CF,Morrow DJ,Roy LM,Walbot V

更新日期：2003-03-01 00:00:00

abstract：:The ubiquitous cell membrane proteins called aquaporins are now firmly established as channel proteins that control the specific transport of water molecules across cell membranes in all living organisms. The aquaporins are thus likely to be of fundamental significance to all facets of plant growth and development aff...

journal_title：Functional & integrative genomics

authors： Forrest KL,Bhave M

更新日期：2007-10-01 00:00:00

abstract：:As the amino acid storing organelle, the protein bodies provide nutrients for embryo development, seed germination and early seedling growth through storage proteolysis in cereal plants, such as wheat and rice. In protein bodies, the monomeric and polymeric prolamins, i.e. gliadins and glutenins, form gluten and play ...

journal_title：Functional & integrative genomics

authors： She M,Ye X,Yan Y,Howit C,Belgard M,Ma W

更新日期：2011-03-01 00:00:00

abstract：:MicroRNAs (miRNAs) are small RNAs (sRNAs) that regulate gene expression in development and adaptive responses to the environment. The early days in the sRNA field was one of the most exciting and promising moments in modern biology, attracting large investments to the understanding of the underlining mechanisms and th...

journal_title：Functional & integrative genomics

authors： Reis RS

更新日期：2017-05-01 00:00:00

abstract：:The oomycete pathogen Plasmopara viticola (Berk. et Curt.) Berl. et de Toni is the causing agent of the destructive downy mildew disease in grapevine. Despite the advances towards elucidation of grapevine resistance mechanisms to downy mildew, increased knowledge of the biological and genetic components of the pathosy...

journal_title：Functional & integrative genomics

authors： Figueiredo A,Monteiro F,Fortes AM,Bonow-Rex M,Zyprian E,Sousa L,Pais MS

更新日期：2012-06-01 00:00:00

abstract：:Natural selection drives species adaptations to biotic and abiotic stresses. Species distributed along a moisture gradient, such as Stipa purpurea, a dominant grass in alpine arid and semi-arid meadows on the Tibetan Plateau, provide an opportunity to evaluate the effects of long-term adaptation to differing degrees o...

journal_title：Functional & integrative genomics

authors： Yang Y,Li X,Kong X,Ma L,Hu X,Yang Y

更新日期：2015-05-01 00:00:00

abstract：:In theory, gene therapy is a simple concept which holds great promise as a cure for disease. In practice, however, considerable obstacles have to be overcome, including problems with safe and efficient gene delivery and stable gene expression. This review gives an overview on the history of gene therapy and analyses s...

journal_title：Functional & integrative genomics

authors： Grosshans H

更新日期：2000-09-01 00:00:00

abstract：:MicroRNAs (miRNAs) play a pivotal role in post-transcriptional regulation of gene expression in plants. In this study, we investigate miRNAs in an agronomically important common tobacco in China, named Honghua Dajinyuan (a drought-tolerant cultivar). Here, we report a comprehensive analysis of miRNA expression profile...

journal_title：Functional & integrative genomics

authors： Yin F,Gao J,Liu M,Qin C,Zhang W,Yang A,Xia M,Zhang Z,Shen Y,Lin H,Luo C,Pan G

更新日期：2014-06-01 00:00:00

abstract：:GDSL-type esterase/lipase (GELP) is mainly characterized by a conserved GDSL domain at N terminus, and is widely found in all living species, both prokaryotes and eukaryotes. GELP gene family consists of a wide range of members playing important roles in plant physiological processes, such as development, stress respo...

journal_title：Functional & integrative genomics

authors： Cao Y,Han Y,Meng D,Abdullah M,Yu J,Li D,Jin Q,Lin Y,Cai Y

更新日期：2018-11-01 00:00:00

abstract：:Nuclear genomes of human, animals, and plants are organized into subunits called chromosomes. When isolated into aqueous suspension, mitotic chromosomes can be classified using flow cytometry according to light scatter and fluorescence parameters. Chromosomes of interest can be purified by flow sorting if they can be ...

journal_title：Functional & integrative genomics

authors： Doležel J,Vrána J,Safář J,Bartoš J,Kubaláková M,Simková H

更新日期：2012-08-01 00:00:00

abstract：:Jatropha curcas is a new promising bioenergy crop due to the high oil content in its seeds that can be converted into biodiesel. Seed size, a major determinant of Jatropha oil yield, is a target trait for Jatropha breeding. Due to the vital roles of phytohormone auxin in controlling seed and fruit development, we scre...

journal_title：Functional & integrative genomics

authors： Ye J,Liu P,Zhu C,Qu J,Wang X,Sun Y,Sun F,Jiang Y,Yue G,Wang C

更新日期：2014-12-01 00:00:00

abstract：:Aldo/keto reductases (AKRs) constitute a multitasking protein family that catalyzes diverse metabolic transformations including detoxification of stress generated reactive aldehydes. Yet this important protein family is poorly understood particularly in cyanobacteria, the ecologically most diverse and significant grou...

journal_title：Functional & integrative genomics

authors： Agrawal C,Yadav S,Rai S,Chatterjee A,Sen S,Rai R,Rai LC

更新日期：2017-07-01 00:00:00